Wall clock time and date at job start Wed Apr 1 2020 00:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46505 * 109.47212 * 184.99959 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.47156 * 180.02562 * 8 6 5 10 10 C 1.76204 * 100.00151 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99845 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00054 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47220 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47248 * 120.00156 * 14 12 10 17 17 H 1.48501 * 109.47068 * 240.00173 * 14 12 10 18 18 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 19 19 C 1.34773 * 120.00358 * 274.99972 * 18 2 1 20 20 O 1.21287 * 119.99899 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00419 * 179.97438 * 19 18 2 22 22 C 1.56245 * 116.68886 * 297.57890 * 21 19 18 23 23 C 1.55913 * 102.63559 * 199.96418 * 22 21 19 24 24 N 1.49522 * 105.39061 * 0.47486 * 23 22 21 25 25 C 1.49527 * 105.91889 * 287.96468 * 24 23 22 26 26 C 1.54652 * 105.28081 * 71.26699 * 25 24 23 27 27 C 1.50462 * 102.04014 * 34.37769 * 24 23 22 28 28 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 32 32 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 35 35 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 36 36 H 0.96999 * 120.00126 * 180.02562 * 13 12 10 37 37 H 0.97007 * 119.99919 * 95.00541 * 18 2 1 38 38 H 1.09003 * 110.66682 * 319.46868 * 22 21 19 39 39 H 1.08993 * 110.67038 * 82.61203 * 22 21 19 40 40 H 1.08994 * 110.87680 * 241.14688 * 23 22 21 41 41 H 1.09005 * 109.57773 * 119.11919 * 23 22 21 42 42 H 1.08997 * 110.27672 * 190.21584 * 25 24 23 43 43 H 1.08994 * 110.28235 * 312.31296 * 25 24 23 44 44 H 1.09002 * 110.67151 * 242.22473 * 26 25 24 45 45 H 1.09002 * 110.67396 * 119.08735 * 26 25 24 46 46 H 1.08997 * 111.91382 * 188.40623 * 27 24 23 47 47 H 1.08999 * 111.97242 * 62.21204 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5002 -0.8264 -1.1904 6 6 4.1731 -1.4292 -2.1905 7 8 3.5701 -1.8843 -3.1393 8 6 5.6750 -1.5368 -2.1303 9 16 6.2785 -2.3902 -3.6081 10 6 8.0102 -2.3773 -3.2832 11 1 8.3865 -1.9239 -2.3780 12 6 8.8909 -2.9488 -4.1911 13 7 8.4325 -3.5000 -5.2950 14 14 10.7269 -2.9344 -3.8470 15 1 10.9821 -2.2582 -2.5497 16 1 11.2299 -4.3302 -3.7856 17 1 11.4282 -2.2028 -4.9324 18 7 2.0182 -0.6905 1.1963 19 6 2.1470 -0.0182 2.3572 20 8 1.8581 1.1585 2.4117 21 6 2.6487 -0.7286 3.5879 22 6 1.7729 -1.9060 4.1246 23 6 2.2538 -2.0432 5.6013 24 7 3.2956 -0.9855 5.7793 25 6 4.4899 -1.4527 5.0104 26 6 4.0977 -1.3092 3.5213 27 6 2.7722 0.1209 4.9042 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -0.1584 -2.1369 32 1 1.6054 -1.7198 -1.2950 33 1 3.9824 -0.4627 -0.4314 34 1 6.1094 -0.5380 -2.0852 35 1 5.9637 -2.0990 -1.2423 36 1 9.0480 -3.8997 -5.9293 37 1 2.2490 -1.6317 1.1528 38 1 0.7136 -1.6562 4.0641 39 1 1.9848 -2.8240 3.5764 40 1 2.6822 -3.0294 5.7802 41 1 1.4164 -1.8659 6.2761 42 1 5.3530 -0.8264 5.2358 43 1 4.7066 -2.4947 5.2453 44 1 4.1005 -2.2808 3.0273 45 1 4.7670 -0.6156 3.0122 46 1 3.4930 0.9317 4.7988 47 1 1.8035 0.4865 5.2447 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533829886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:48 Heat of formation + Delta-G solvation = -83.660675 kcal Electronic energy + Delta-G solvation = -27532.626055 eV Core-core repulsion = 23647.529863 eV Total energy + Delta-G solvation = -3885.096192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16192 -40.82595 -40.01223 -37.45654 -34.87313 -34.57948 -32.88078 -31.60546 -31.26169 -30.61150 -29.04978 -27.74289 -26.85453 -24.30359 -23.49116 -22.05247 -21.75012 -21.73947 -20.49516 -19.82354 -18.22029 -17.75457 -17.62462 -17.12843 -17.07533 -16.87787 -16.49085 -16.27869 -15.90626 -15.85540 -15.42712 -14.86568 -14.56077 -14.36786 -14.19274 -13.92104 -13.80275 -13.77876 -13.60644 -13.26622 -13.15832 -13.15098 -12.99542 -12.91391 -12.71407 -12.59087 -12.43207 -12.28893 -12.09683 -11.71035 -11.65242 -11.27165 -11.15901 -11.00347 -10.92110 -10.27445 -10.26015 -10.17464 -10.04614 -8.66078 -8.34986 -6.12442 1.26826 1.41329 1.45271 1.47464 1.57906 1.59370 1.97454 2.24911 2.28972 2.80013 2.99553 3.31571 3.40161 3.44975 3.53686 3.72889 3.91232 3.94703 4.03009 4.04712 4.14531 4.22387 4.29281 4.30218 4.48986 4.50824 4.52759 4.56239 4.63682 4.69578 4.74730 4.77681 4.85063 4.92090 4.93383 4.95975 5.02733 5.12678 5.21029 5.34868 5.41231 5.42500 5.49041 5.67955 6.20076 6.40384 6.43237 7.06973 7.12258 7.19478 8.74337 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002545 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.534647 B =11001.204808 C =12833.331168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.276 1.276 18 N -0.711 5.711 19 C 0.556 3.444 20 O -0.571 6.571 21 C -0.132 4.132 22 C -0.126 4.126 23 C 0.012 3.988 24 N -0.480 5.480 25 C 0.012 3.988 26 C -0.132 4.132 27 C 0.038 3.962 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.536 4.185 23.071 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.201 1.201 18 N -0.363 5.363 19 C 0.343 3.657 20 O -0.449 6.449 21 C -0.137 4.137 22 C -0.165 4.165 23 C -0.116 4.116 24 N -0.200 5.200 25 C -0.116 4.116 26 C -0.171 4.171 27 C -0.091 4.091 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.575 4.341 22.137 27.413 hybrid contribution 1.800 0.094 0.170 1.811 sum -13.775 4.435 22.307 26.590 Atomic orbital electron populations 1.22055 0.92789 1.03440 1.03103 1.21134 0.95747 0.96974 0.82524 0.89645 1.21730 0.79350 1.01881 0.97832 1.45714 1.07746 1.59918 1.23379 1.19987 0.88772 0.76958 0.82018 1.90708 1.70330 1.48364 1.34437 1.23377 0.94856 1.05642 1.04355 1.85561 1.05750 1.74926 1.25864 1.23227 0.91752 1.44216 1.10060 0.89976 1.26100 1.05098 0.93869 0.94041 1.70181 1.37302 1.36647 1.10624 0.84927 0.76059 0.78306 0.78803 1.18041 1.19874 1.20119 1.46029 1.66730 1.14692 1.08865 1.19711 0.76152 0.86026 0.83839 1.90719 1.51377 1.17436 1.85408 1.23725 0.98523 0.97742 0.93737 1.23406 0.99314 0.96661 0.97151 1.23896 0.95990 0.96679 0.95078 1.69975 1.04421 1.05549 1.40015 1.23651 0.94936 1.02463 0.90595 1.23227 0.92808 1.02204 0.98836 1.24281 1.01168 0.95092 0.88594 0.90106 0.90869 0.92580 0.90172 0.90301 0.75214 0.87679 0.87012 0.92005 0.75091 0.90571 0.88849 0.88756 0.89602 0.89868 0.88845 0.88769 0.91025 0.90162 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 71.98 0.68 -1.27 16 2 C 0.14 2.05 2.73 44.99 0.12 2.17 16 3 H 0.09 1.51 7.58 -2.39 -0.02 1.50 16 4 C 0.12 2.08 5.23 86.38 0.45 2.54 16 5 N -0.71 -15.62 5.39 -463.06 -2.50 -18.12 16 6 C 0.54 18.12 7.85 87.66 0.69 18.80 16 7 O -0.56 -24.13 15.86 -3.03 -0.05 -24.18 16 8 C -0.13 -4.89 6.16 71.24 0.44 -4.46 16 9 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 10 C -0.54 -30.38 9.50 67.95 0.65 -29.73 16 11 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 12 C 0.01 0.77 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 14 Si 1.00 42.83 29.55 68.60 2.03 44.86 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 17 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 18 N -0.71 -9.12 4.52 -442.53 -2.00 -11.12 16 19 C 0.56 9.38 7.25 87.66 0.64 10.02 16 20 O -0.57 -14.22 16.23 -3.05 -0.05 -14.27 16 21 C -0.13 -1.71 1.37 -49.21 -0.07 -1.77 16 22 C -0.13 -1.16 6.13 32.73 0.20 -0.95 16 23 C 0.01 0.12 6.64 86.80 0.58 0.70 16 24 N -0.48 -6.73 6.94 -853.86 -5.93 -12.66 16 25 C 0.01 0.14 6.61 86.35 0.57 0.71 16 26 C -0.13 -1.45 6.04 32.28 0.20 -1.25 16 27 C 0.04 0.60 6.05 87.06 0.53 1.12 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.41 7.12 8.14 -92.71 -0.75 6.36 16 34 H 0.10 3.61 8.14 -2.40 -0.02 3.59 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.65 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.41 3.97 8.60 -92.70 -0.80 3.17 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.58 7.86 -2.39 -0.02 0.56 16 40 H 0.09 0.72 7.69 -2.39 -0.02 0.70 16 41 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 0.86 7.69 -2.39 -0.02 0.84 16 44 H 0.09 0.78 7.86 -2.39 -0.02 0.76 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.48 397.54 -3.80 -81.28 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.57 Total: 20.27 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 6.13 Total: -2.14 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -10.13 Total: -96.69 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.10 Total: -38.45 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -77.48 -3.80 -81.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533829886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.380 kcal (2) G-P(sol) polarization free energy of solvation -77.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds