Wall clock time and date at job start Wed Apr 1 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00421 * 2 1 4 4 O 1.21282 * 120.00289 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99485 * 359.97438 * 3 2 1 6 6 S 1.81006 * 109.46712 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99624 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00063 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99752 * 179.97438 * 7 6 5 10 10 N 1.31628 * 120.00242 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00081 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46863 * 90.00157 * 11 9 7 13 13 H 1.48501 * 109.47333 * 210.00047 * 11 9 7 14 14 H 1.48499 * 109.46908 * 330.00368 * 11 9 7 15 15 C 1.46502 * 120.00215 * 179.97438 * 2 1 3 16 16 C 1.53501 * 114.20453 * 59.99885 * 15 2 1 17 17 N 1.47062 * 87.98464 * 220.34913 * 16 15 2 18 18 C 1.34780 * 136.05804 * 207.08513 * 17 16 15 19 19 O 1.21283 * 119.99993 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00307 * 180.02562 * 18 17 16 21 21 H 1.08998 * 109.87826 * 353.38712 * 20 18 17 22 22 C 1.54311 * 109.88826 * 114.59158 * 20 18 17 23 23 C 1.55137 * 103.01818 * 141.69111 * 22 20 18 24 24 C 1.54906 * 101.65533 * 324.34272 * 23 22 20 25 25 N 1.47449 * 109.88698 * 232.36172 * 20 18 17 26 26 C 1.46900 * 110.99915 * 3.84798 * 25 20 18 27 27 C 1.47068 * 87.88902 * 27.34089 * 17 16 15 28 28 H 1.09001 * 109.46994 * 270.00360 * 1 2 3 29 29 H 1.08996 * 109.46643 * 30.00120 * 1 2 3 30 30 H 1.08999 * 109.47011 * 149.99897 * 1 2 3 31 31 H 1.08997 * 109.47271 * 299.99586 * 5 3 2 32 32 H 1.08995 * 109.47133 * 60.00310 * 5 3 2 33 33 H 0.97003 * 120.00342 * 179.97438 * 10 9 7 34 34 H 1.08998 * 113.41854 * 193.20094 * 15 2 1 35 35 H 1.08998 * 113.46368 * 105.56879 * 16 15 2 36 36 H 1.09002 * 113.52202 * 335.13803 * 16 15 2 37 37 H 1.09005 * 110.70610 * 260.07102 * 22 20 18 38 38 H 1.08997 * 110.71183 * 23.30769 * 22 20 18 39 39 H 1.09004 * 110.99427 * 82.43708 * 23 22 20 40 40 H 1.09002 * 110.99491 * 206.25319 * 23 22 20 41 41 H 1.08999 * 110.37398 * 278.24305 * 24 23 22 42 42 H 1.08996 * 110.37509 * 155.90005 * 24 23 22 43 43 H 1.09001 * 109.47544 * 50.44800 * 26 25 20 44 44 H 1.08997 * 109.47009 * 170.44343 * 26 25 20 45 45 H 1.09005 * 109.47302 * 290.44491 * 26 25 20 46 46 H 1.09004 * 113.46378 * 87.43266 * 27 17 16 47 47 H 1.08995 * 113.47312 * 217.87337 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3764 5.0305 -0.0024 9 6 1.9284 6.5080 -0.0028 10 7 3.2267 6.7246 -0.0026 11 14 0.7410 7.9501 -0.0050 12 1 0.4249 8.3330 1.3945 13 1 1.3631 9.1025 -0.7051 14 1 -0.5089 7.5610 -0.7061 15 6 2.1975 -1.2687 0.0006 16 6 1.9060 -2.1643 -1.2115 17 7 1.9119 -3.3157 -0.2967 18 6 2.1757 -4.6336 -0.3970 19 8 2.5012 -5.1073 -1.4650 20 6 2.0651 -5.5189 0.8176 21 1 1.8779 -4.9116 1.7031 22 6 0.9213 -6.5363 0.6232 23 6 1.4909 -7.8292 1.2641 24 6 2.9908 -7.7293 0.8900 25 7 3.3102 -6.2893 0.9918 26 6 4.3139 -5.9008 -0.0080 27 6 1.4969 -2.3975 0.7746 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7592 2.5299 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 3.5670 7.6330 -0.0031 34 1 3.2574 -1.1569 0.2289 35 1 2.7159 -2.1851 -1.9406 36 1 0.9336 -1.9768 -1.6671 37 1 0.0224 -6.2104 1.1467 38 1 0.7173 -6.6891 -0.4366 39 1 1.3569 -7.8207 2.3458 40 1 1.0368 -8.7166 0.8229 41 1 3.1523 -8.0828 -0.1284 42 1 3.5960 -8.3027 1.5921 43 1 4.4172 -4.8157 -0.0165 44 1 5.2722 -6.3549 0.2438 45 1 3.9971 -6.2433 -0.9931 46 1 0.4164 -2.2708 0.8433 47 1 1.9581 -2.6170 1.7374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536278058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:33 Heat of formation + Delta-G solvation = -2.498314 kcal Electronic energy + Delta-G solvation = -27353.601822 eV Core-core repulsion = 23472.025094 eV Total energy + Delta-G solvation = -3881.576728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40279 -40.17395 -38.63911 -37.31799 -34.85196 -32.50799 -32.46338 -31.03514 -29.66295 -28.19151 -27.04682 -26.40616 -25.90289 -25.52416 -23.06257 -21.72601 -21.35320 -19.36699 -19.12485 -17.87831 -17.77155 -17.14240 -16.60142 -16.24508 -16.10015 -15.67349 -15.31597 -14.96429 -14.83535 -14.43105 -14.26226 -13.83066 -13.58472 -13.36324 -13.20905 -13.13688 -13.09572 -12.83106 -12.57005 -12.42400 -12.35605 -12.12713 -12.04113 -11.86271 -11.69426 -11.54872 -11.30281 -11.21855 -11.09224 -11.06045 -10.79838 -10.36908 -9.85099 -9.51568 -9.17574 -9.09975 -8.71900 -8.60505 -8.27765 -6.54739 -6.25015 -3.96282 2.11856 2.24173 2.86001 2.90702 3.19890 3.22993 3.27798 3.52418 3.60668 3.86001 4.06167 4.11175 4.16665 4.22031 4.53040 4.61608 4.66620 4.82685 4.86765 4.96952 4.99093 5.01636 5.05057 5.10240 5.11872 5.22183 5.26573 5.29156 5.31706 5.39740 5.40499 5.42743 5.48618 5.59566 5.62584 5.71967 5.77876 5.78955 5.83447 6.05992 6.41253 6.42589 6.52596 7.24726 7.37904 7.56096 7.72775 8.31496 8.39768 9.20300 10.82330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.001867 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.408483 B =14991.230107 C =15326.700920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.537 3.463 4 O -0.510 6.510 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.119 3.881 16 C 0.086 3.914 17 N -0.639 5.639 18 C 0.537 3.463 19 O -0.536 6.536 20 C 0.059 3.941 21 H 0.102 0.898 22 C -0.128 4.128 23 C -0.126 4.126 24 C 0.037 3.963 25 N -0.509 5.509 26 C 0.004 3.996 27 C 0.085 3.915 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.269 0.731 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -27.298 3.078 28.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C 0.325 3.675 4 O -0.383 6.383 5 C -0.301 4.301 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.013 3.987 16 C -0.038 4.038 17 N -0.376 5.376 18 C 0.326 3.674 19 O -0.413 6.413 20 C -0.052 4.052 21 H 0.120 0.880 22 C -0.167 4.167 23 C -0.164 4.164 24 C -0.090 4.090 25 N -0.234 5.234 26 C -0.144 4.144 27 C -0.039 4.039 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.614 -27.531 2.961 28.253 hybrid contribution -2.625 0.882 -0.800 2.882 sum -8.239 -26.649 2.162 27.977 Atomic orbital electron populations 1.21839 0.79377 1.03454 1.02194 1.47731 1.06760 1.04753 1.75672 1.20434 0.87967 0.84425 0.74671 1.90713 1.13748 1.86673 1.47144 1.23566 1.04631 0.96954 1.04904 1.85441 1.07931 0.93344 1.96724 1.22845 0.94277 0.92155 1.59119 0.90894 1.24995 0.95679 0.98401 0.94501 1.70013 1.11745 1.21722 1.46710 0.86167 0.80246 0.80718 0.78356 1.20261 1.20745 1.19692 1.22760 0.98961 0.81732 0.95222 1.23545 1.02929 0.81805 0.95533 1.49419 1.67485 1.05928 1.14729 1.20645 0.76477 0.79696 0.90590 1.90696 1.47668 1.72631 1.30259 1.22603 0.92087 0.94935 0.95615 0.87965 1.22750 0.97112 0.94508 1.02341 1.22702 0.94911 0.97321 1.01489 1.23179 0.96152 0.88782 1.00922 1.64079 1.07173 1.04173 1.47965 1.22960 0.95223 1.01243 0.94942 1.23630 1.00884 0.86076 0.93301 0.92171 0.90055 0.91324 0.89060 0.89034 0.92141 0.84591 0.89687 0.89332 0.89933 0.90452 0.90185 0.90269 0.92911 0.89590 0.91836 0.91493 0.91788 0.88821 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 8.91 59.85 0.53 1.14 16 2 N -0.61 -7.41 3.11 -173.55 -0.54 -7.95 16 3 C 0.54 9.34 7.69 -10.98 -0.08 9.26 16 4 O -0.51 -10.93 15.38 5.56 0.09 -10.85 16 5 C -0.15 -2.84 4.71 36.01 0.17 -2.67 16 6 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 7 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 11 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.12 1.28 4.58 -67.67 -0.31 0.97 16 16 C 0.09 0.88 8.17 -8.50 -0.07 0.81 16 17 N -0.64 -6.36 3.69 -185.05 -0.68 -7.04 16 18 C 0.54 6.00 5.18 -10.98 -0.06 5.95 16 19 O -0.54 -7.71 14.55 5.55 0.08 -7.63 16 20 C 0.06 0.52 3.80 -67.88 -0.26 0.26 16 21 H 0.10 0.79 7.32 -51.93 -0.38 0.41 16 22 C -0.13 -0.90 6.45 -24.91 -0.16 -1.06 16 23 C -0.13 -0.74 7.08 -24.59 -0.17 -0.91 16 24 C 0.04 0.28 6.73 -2.30 -0.02 0.26 16 25 N -0.51 -4.84 5.44 -232.95 -1.27 -6.11 16 26 C 0.00 0.04 8.19 60.06 0.49 0.54 16 27 C 0.09 0.66 7.47 -8.36 -0.06 0.60 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 30 H 0.07 0.41 6.17 -51.93 -0.32 0.09 16 31 H 0.09 1.58 7.40 -51.92 -0.38 1.20 16 32 H 0.09 1.58 8.11 -51.92 -0.42 1.16 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.14 1.74 7.30 -51.93 -0.38 1.36 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.79 6.97 -51.93 -0.36 0.42 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.66 7.70 -51.93 -0.40 0.26 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.43 7.63 -51.93 -0.40 0.03 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.75 6.96 -51.93 -0.36 0.38 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.78 5.81 -51.93 -0.30 0.48 16 46 H 0.09 0.54 6.54 -51.93 -0.34 0.20 16 47 H 0.09 0.61 7.89 -51.93 -0.41 0.20 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -35.37 386.12 -10.10 -45.47 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.29 Total: -1.41 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.20 Total: 2.55 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -1.76 Total: -46.08 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.37 -10.10 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536278058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.972 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds