Wall clock time and date at job start Wed Apr 1 2020 01:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 120.00421 * 2 1 4 4 O 1.21282 * 120.00289 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99485 * 359.97438 * 3 2 1 6 6 S 1.81006 * 109.46712 * 180.02562 * 5 3 2 7 7 C 1.76203 * 99.99624 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00063 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99752 * 179.97438 * 7 6 5 10 10 N 1.31628 * 120.00242 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00081 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46863 * 90.00157 * 11 9 7 13 13 H 1.48501 * 109.47333 * 210.00047 * 11 9 7 14 14 H 1.48499 * 109.46908 * 330.00368 * 11 9 7 15 15 C 1.46502 * 120.00215 * 179.97438 * 2 1 3 16 16 C 1.53501 * 114.20453 * 59.99885 * 15 2 1 17 17 N 1.47062 * 87.98464 * 220.34913 * 16 15 2 18 18 C 1.34780 * 136.05804 * 207.08513 * 17 16 15 19 19 O 1.21283 * 119.99993 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00307 * 180.02562 * 18 17 16 21 21 H 1.08998 * 109.87826 * 353.38712 * 20 18 17 22 22 C 1.54311 * 109.88826 * 114.59158 * 20 18 17 23 23 C 1.55137 * 103.01818 * 141.69111 * 22 20 18 24 24 C 1.54906 * 101.65533 * 324.34272 * 23 22 20 25 25 N 1.47449 * 109.88698 * 232.36172 * 20 18 17 26 26 C 1.46900 * 110.99915 * 3.84798 * 25 20 18 27 27 C 1.47068 * 87.88902 * 27.34089 * 17 16 15 28 28 H 1.09001 * 109.46994 * 270.00360 * 1 2 3 29 29 H 1.08996 * 109.46643 * 30.00120 * 1 2 3 30 30 H 1.08999 * 109.47011 * 149.99897 * 1 2 3 31 31 H 1.08997 * 109.47271 * 299.99586 * 5 3 2 32 32 H 1.08995 * 109.47133 * 60.00310 * 5 3 2 33 33 H 0.97003 * 120.00342 * 179.97438 * 10 9 7 34 34 H 1.08998 * 113.41854 * 193.20094 * 15 2 1 35 35 H 1.08998 * 113.46368 * 105.56879 * 16 15 2 36 36 H 1.09002 * 113.52202 * 335.13803 * 16 15 2 37 37 H 1.09005 * 110.70610 * 260.07102 * 22 20 18 38 38 H 1.08997 * 110.71183 * 23.30769 * 22 20 18 39 39 H 1.09004 * 110.99427 * 82.43708 * 23 22 20 40 40 H 1.09002 * 110.99491 * 206.25319 * 23 22 20 41 41 H 1.08999 * 110.37398 * 278.24305 * 24 23 22 42 42 H 1.08996 * 110.37509 * 155.90005 * 24 23 22 43 43 H 1.09001 * 109.47544 * 50.44800 * 26 25 20 44 44 H 1.08997 * 109.47009 * 170.44343 * 26 25 20 45 45 H 1.09005 * 109.47302 * 290.44491 * 26 25 20 46 46 H 1.09004 * 113.46378 * 87.43266 * 27 17 16 47 47 H 1.08995 * 113.47312 * 217.87337 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5618 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3764 5.0305 -0.0024 9 6 1.9284 6.5080 -0.0028 10 7 3.2267 6.7246 -0.0026 11 14 0.7410 7.9501 -0.0050 12 1 0.4249 8.3330 1.3945 13 1 1.3631 9.1025 -0.7051 14 1 -0.5089 7.5610 -0.7061 15 6 2.1975 -1.2687 0.0006 16 6 1.9060 -2.1643 -1.2115 17 7 1.9119 -3.3157 -0.2967 18 6 2.1757 -4.6336 -0.3970 19 8 2.5012 -5.1073 -1.4650 20 6 2.0651 -5.5189 0.8176 21 1 1.8779 -4.9116 1.7031 22 6 0.9213 -6.5363 0.6232 23 6 1.4909 -7.8292 1.2641 24 6 2.9908 -7.7293 0.8900 25 7 3.3102 -6.2893 0.9918 26 6 4.3139 -5.9008 -0.0080 27 6 1.4969 -2.3975 0.7746 28 1 -0.3633 0.0001 1.0277 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7592 2.5299 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 3.5670 7.6330 -0.0031 34 1 3.2574 -1.1569 0.2289 35 1 2.7159 -2.1851 -1.9406 36 1 0.9336 -1.9768 -1.6671 37 1 0.0224 -6.2104 1.1467 38 1 0.7173 -6.6891 -0.4366 39 1 1.3569 -7.8207 2.3458 40 1 1.0368 -8.7166 0.8229 41 1 3.1523 -8.0828 -0.1284 42 1 3.5960 -8.3027 1.5921 43 1 4.4172 -4.8157 -0.0165 44 1 5.2722 -6.3549 0.2438 45 1 3.9971 -6.2433 -0.9931 46 1 0.4164 -2.2708 0.8433 47 1 1.9581 -2.6170 1.7374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536278058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:32 Heat of formation + Delta-G solvation = -29.037655 kcal Electronic energy + Delta-G solvation = -27354.752654 eV Core-core repulsion = 23472.025094 eV Total energy + Delta-G solvation = -3882.727560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24261 -41.11740 -39.73311 -38.18132 -35.96073 -34.56525 -33.15714 -31.96805 -30.75895 -29.14337 -27.87953 -27.62894 -27.15336 -26.64942 -23.96879 -22.27501 -22.22654 -20.52144 -19.91429 -19.58414 -18.68132 -18.31669 -17.46939 -17.15658 -16.96782 -16.86007 -16.75460 -16.25617 -16.02654 -15.68802 -15.10609 -14.92002 -14.68621 -14.56625 -14.17966 -14.00737 -13.92112 -13.84351 -13.59702 -13.45284 -13.21751 -13.12428 -13.03303 -12.91085 -12.87748 -12.59351 -12.56701 -12.37740 -12.11372 -12.07708 -11.79122 -11.71207 -11.21413 -11.12444 -10.90856 -10.23577 -9.99027 -9.72615 -9.38219 -8.65212 -8.32848 -6.10844 1.19251 1.31371 1.40952 1.43967 1.51988 1.54054 1.64927 2.17868 2.29361 2.90440 3.01560 3.12609 3.23540 3.30895 3.51475 3.65669 3.72071 3.73645 4.02817 4.09614 4.15325 4.22029 4.27293 4.30957 4.33602 4.41368 4.47023 4.47671 4.52863 4.53784 4.61024 4.72738 4.77203 4.83753 4.87935 4.90705 4.97887 5.02242 5.03507 5.23965 5.43983 5.48055 5.72308 5.80323 6.18532 6.22062 6.50865 6.88885 7.08654 7.10576 8.76193 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.001867 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.408483 B =14991.230107 C =15326.700920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.595 5.595 3 C 0.535 3.465 4 O -0.564 6.564 5 C -0.122 4.122 6 S -0.158 6.158 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 0.998 3.002 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.110 3.890 16 C 0.087 3.913 17 N -0.641 5.641 18 C 0.532 3.468 19 O -0.577 6.577 20 C 0.058 3.942 21 H 0.120 0.880 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.031 3.969 25 N -0.516 5.516 26 C 0.014 3.986 27 C 0.103 3.897 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.270 0.730 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.129 0.871 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -28.566 4.536 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.323 3.677 4 O -0.441 6.441 5 C -0.273 4.273 6 S 0.069 5.931 7 C -0.690 4.690 8 H 0.104 0.896 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.820 3.180 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.180 1.180 15 C 0.005 3.995 16 C -0.037 4.037 17 N -0.376 5.376 18 C 0.323 3.677 19 O -0.456 6.456 20 C -0.053 4.053 21 H 0.138 0.862 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.096 4.096 25 N -0.241 5.241 26 C -0.134 4.134 27 C -0.020 4.020 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.147 0.853 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.506 -28.839 4.440 30.688 hybrid contribution -1.445 1.136 -1.278 2.239 sum -10.951 -27.703 3.162 29.957 Atomic orbital electron populations 1.22243 0.76260 1.05071 1.04373 1.47607 1.08460 1.03414 1.73388 1.20210 0.87234 0.85444 0.74785 1.90701 1.15907 1.87436 1.50095 1.23380 1.02641 0.94455 1.06827 1.85660 1.12822 0.97549 1.97048 1.23194 0.94684 0.92517 1.58642 0.89647 1.26131 0.97535 1.01761 0.93843 1.70189 1.14147 1.22403 1.48126 0.84960 0.77952 0.76338 0.78776 1.19304 1.20611 1.18020 1.22714 0.98070 0.81778 0.96971 1.23557 1.03266 0.81915 0.95005 1.49461 1.67031 1.05710 1.15441 1.21156 0.75661 0.80044 0.90849 1.90682 1.49502 1.73484 1.31959 1.22782 0.92526 0.95101 0.94861 0.86187 1.22774 0.97388 0.94548 1.01687 1.22720 0.93199 0.97280 1.02384 1.23296 0.97971 0.87651 1.00695 1.64155 1.07403 1.05449 1.47061 1.22783 0.96243 0.99999 0.94399 1.23710 1.02517 0.82957 0.92791 0.89629 0.90131 0.88189 0.87090 0.86813 0.92091 0.87489 0.92010 0.87108 0.87419 0.92307 0.88666 0.88910 0.94099 0.88382 0.93634 0.90548 0.93811 0.85337 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 8.91 127.77 1.14 1.88 16 2 N -0.60 -13.19 3.11 -821.38 -2.56 -15.74 16 3 C 0.54 18.50 7.69 87.66 0.67 19.17 16 4 O -0.56 -25.23 15.38 -3.03 -0.05 -25.28 16 5 C -0.12 -4.51 4.71 71.24 0.34 -4.17 16 6 S -0.16 -8.55 20.57 -56.49 -1.16 -9.71 16 7 C -0.54 -30.11 9.50 67.95 0.65 -29.46 16 8 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 9 C 0.01 0.67 5.49 84.86 0.47 1.13 16 10 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 11 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 15 C 0.11 2.24 4.58 45.55 0.21 2.45 16 16 C 0.09 1.69 8.17 83.19 0.68 2.37 16 17 N -0.64 -11.78 3.69 -857.76 -3.16 -14.94 16 18 C 0.53 11.55 5.18 87.66 0.45 12.00 16 19 O -0.58 -17.05 14.55 -3.04 -0.04 -17.09 16 20 C 0.06 0.92 3.80 44.51 0.17 1.09 16 21 H 0.12 1.45 7.32 -2.39 -0.02 1.43 16 22 C -0.13 -1.45 6.45 31.77 0.20 -1.24 16 23 C -0.12 -1.06 7.08 31.98 0.23 -0.83 16 24 C 0.03 0.42 6.73 86.77 0.58 1.01 16 25 N -0.52 -9.29 5.44 -890.92 -4.85 -14.14 16 26 C 0.01 0.31 8.19 127.69 1.05 1.35 16 27 C 0.10 1.26 7.47 83.27 0.62 1.88 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.06 6.44 -2.39 -0.02 1.05 16 30 H 0.10 0.65 6.17 -2.39 -0.01 0.64 16 31 H 0.11 3.65 7.40 -2.40 -0.02 3.64 16 32 H 0.11 3.69 8.11 -2.40 -0.02 3.67 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.11 2.87 7.30 -2.39 -0.02 2.85 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.67 6.97 -2.39 -0.02 1.65 16 37 H 0.11 0.70 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.92 7.70 -2.39 -0.02 0.90 16 39 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.04 0.65 7.63 -2.39 -0.02 0.64 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.04 1.12 6.96 -2.39 -0.02 1.11 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.04 1.13 5.81 -2.38 -0.01 1.12 16 46 H 0.13 0.77 6.54 -2.38 -0.02 0.75 16 47 H 0.10 1.05 7.89 -2.39 -0.02 1.03 16 Total: -1.00 -82.75 386.12 -1.09 -83.84 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.97 Total: 14.94 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.45 Total: 8.63 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -10.28 Total: -100.02 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.09 Total: -42.37 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -82.75 -1.09 -83.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536278058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -82.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds