Wall clock time and date at job start Wed Apr 1 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99939 * 2 1 4 4 O 1.21281 * 120.00045 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00269 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47144 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99782 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00150 * 359.97438 * 7 6 5 9 9 C 1.38803 * 120.00204 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99481 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00275 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47042 * 89.99983 * 11 9 7 13 13 H 1.48496 * 109.47042 * 209.99826 * 11 9 7 14 14 H 1.48494 * 109.46932 * 330.00073 * 11 9 7 15 15 C 1.46496 * 120.00112 * 179.97438 * 2 1 3 16 16 C 1.53502 * 114.20635 * 60.00346 * 15 2 1 17 17 N 1.47063 * 87.98556 * 220.14876 * 16 15 2 18 18 C 1.34783 * 136.05590 * 207.08239 * 17 16 15 19 19 O 1.21278 * 119.99743 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00123 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.33378 * 39.19840 * 20 18 17 22 22 C 1.55380 * 110.34912 * 276.86709 * 20 18 17 23 23 C 1.55142 * 101.43737 * 204.11227 * 22 20 18 24 24 C 1.54312 * 103.17714 * 35.64527 * 23 22 20 25 25 N 1.47443 * 107.23612 * 337.62814 * 24 23 22 26 26 C 1.46900 * 111.00227 * 236.74273 * 25 24 23 27 27 C 1.47062 * 87.88688 * 27.33995 * 17 16 15 28 28 H 1.08999 * 109.47322 * 270.00301 * 1 2 3 29 29 H 1.09004 * 109.47260 * 30.00339 * 1 2 3 30 30 H 1.09002 * 109.46977 * 150.00157 * 1 2 3 31 31 H 1.09006 * 109.46908 * 300.00203 * 5 3 2 32 32 H 1.09002 * 109.47117 * 59.99846 * 5 3 2 33 33 H 0.96998 * 119.99822 * 180.02562 * 10 9 7 34 34 H 1.08997 * 113.28584 * 193.06846 * 15 2 1 35 35 H 1.08992 * 113.46976 * 105.36262 * 16 15 2 36 36 H 1.09008 * 113.51614 * 334.93625 * 16 15 2 37 37 H 1.09003 * 111.17446 * 86.06057 * 22 20 18 38 38 H 1.08996 * 111.00619 * 322.09728 * 22 20 18 39 39 H 1.09002 * 110.70816 * 277.17375 * 23 22 20 40 40 H 1.09005 * 110.70106 * 154.11515 * 23 22 20 41 41 H 1.08997 * 109.89327 * 97.03090 * 24 23 22 42 42 H 1.09003 * 109.89220 * 218.21893 * 24 23 22 43 43 H 1.09002 * 109.47062 * 59.87336 * 26 25 24 44 44 H 1.08998 * 109.47146 * 179.86779 * 26 25 24 45 45 H 1.08995 * 109.47111 * 299.87499 * 26 25 24 46 46 H 1.09003 * 113.46691 * 87.43936 * 27 17 16 47 47 H 1.09001 * 113.46937 * 217.87624 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3763 5.0305 -0.0032 9 6 1.9282 6.5081 -0.0028 10 7 3.2266 6.7247 -0.0026 11 14 0.7408 7.9501 -0.0050 12 1 0.4246 8.3330 1.3945 13 1 1.3629 9.1025 -0.7050 14 1 -0.5090 7.5610 -0.7062 15 6 2.1975 -1.2687 0.0006 16 6 1.9060 -2.1643 -1.2116 17 7 1.9169 -3.3163 -0.2975 18 6 2.1841 -4.6334 -0.3993 19 8 2.5088 -5.1054 -1.4683 20 6 2.0783 -5.5198 0.8148 21 1 1.2178 -5.2330 1.4194 22 6 3.3826 -5.4423 1.6556 23 6 3.3424 -6.7966 2.4114 24 6 2.7249 -7.7593 1.3755 25 7 1.9729 -6.9377 0.4094 26 6 0.5683 -7.3619 0.3385 27 6 1.5015 -2.3999 0.7751 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7591 2.5299 -0.8909 32 1 0.7584 2.5303 0.8891 33 1 3.5668 7.6330 -0.0024 34 1 3.2575 -1.1541 0.2269 35 1 2.7144 -2.1823 -1.9423 36 1 0.9322 -1.9791 -1.6650 37 1 3.3524 -4.6050 2.3529 38 1 4.2597 -5.3805 1.0115 39 1 2.7100 -6.7255 3.2964 40 1 4.3485 -7.1164 2.6830 41 1 3.5146 -8.3067 0.8609 42 1 2.0509 -8.4568 1.8729 43 1 0.1076 -7.2588 1.3210 44 1 0.0361 -6.7379 -0.3795 45 1 0.5189 -8.4036 0.0216 46 1 0.4208 -2.2763 0.8461 47 1 1.9653 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536278059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:35 Heat of formation + Delta-G solvation = -7.318343 kcal Electronic energy + Delta-G solvation = -27177.937128 eV Core-core repulsion = 23296.151388 eV Total energy + Delta-G solvation = -3881.785740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12456 -39.87597 -38.67371 -37.42029 -34.80690 -32.58329 -32.46100 -30.94567 -29.65048 -28.13379 -27.01446 -26.33306 -26.09307 -25.52108 -23.03796 -21.74438 -21.23706 -19.37644 -19.08919 -17.80081 -17.74822 -17.10109 -16.59423 -16.21169 -15.92183 -15.66355 -15.22058 -14.84261 -14.77994 -14.29515 -14.18828 -13.84039 -13.64773 -13.57785 -13.17348 -13.15127 -13.08186 -12.99287 -12.56617 -12.51362 -12.40327 -12.21565 -12.02090 -11.97476 -11.73934 -11.65001 -11.23673 -11.22691 -11.09095 -11.05741 -10.79508 -10.03109 -9.84326 -9.49290 -9.09756 -8.99125 -8.75990 -8.69067 -8.27379 -6.54387 -6.24863 -3.95980 2.24357 2.36076 2.87451 2.92834 3.19957 3.23282 3.27959 3.48981 3.56276 3.97678 4.09520 4.14297 4.16952 4.32047 4.44530 4.60929 4.65476 4.69431 4.88083 4.90259 4.92003 4.98762 5.01949 5.04579 5.07630 5.10434 5.20984 5.28383 5.31590 5.36200 5.44229 5.46261 5.46837 5.50641 5.54650 5.61383 5.72909 5.80289 5.84924 6.06668 6.38667 6.45302 6.54485 7.31471 7.45640 7.56350 7.97607 8.31739 8.41093 9.20489 10.82513 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.001851 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.486286 B =15122.056280 C =15345.568276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.613 5.613 3 C 0.537 3.463 4 O -0.510 6.510 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.119 3.881 16 C 0.089 3.911 17 N -0.647 5.647 18 C 0.554 3.446 19 O -0.512 6.512 20 C 0.061 3.939 21 H 0.075 0.925 22 C -0.116 4.116 23 C -0.141 4.141 24 C 0.044 3.956 25 N -0.514 5.514 26 C 0.022 3.978 27 C 0.086 3.914 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.269 0.731 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -26.825 5.767 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.349 5.349 3 C 0.325 3.675 4 O -0.383 6.383 5 C -0.301 4.301 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.013 3.987 16 C -0.035 4.035 17 N -0.385 5.385 18 C 0.342 3.658 19 O -0.385 6.385 20 C -0.051 4.051 21 H 0.093 0.907 22 C -0.154 4.154 23 C -0.179 4.179 24 C -0.083 4.083 25 N -0.239 5.239 26 C -0.126 4.126 27 C -0.038 4.038 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.260 -27.282 4.644 28.170 hybrid contribution -2.851 1.021 0.785 3.128 sum -8.111 -26.261 5.428 28.016 Atomic orbital electron populations 1.21834 0.79428 1.03469 1.02118 1.47729 1.06749 1.04800 1.75633 1.20422 0.87963 0.84423 0.74686 1.90711 1.13741 1.86682 1.47190 1.23568 1.04626 0.96978 1.04893 1.85432 1.07940 0.93341 1.96721 1.22847 0.94279 0.92163 1.59098 0.90903 1.24997 0.95680 0.98401 0.94509 1.70014 1.11739 1.21715 1.46724 0.86165 0.80254 0.80722 0.78344 1.20276 1.20746 1.19690 1.22771 0.98900 0.81659 0.95405 1.23491 1.02842 0.81681 0.95457 1.49335 1.68786 1.05990 1.14398 1.19885 0.76745 0.79038 0.90144 1.90721 1.45988 1.72369 1.29403 1.22511 0.99837 0.89578 0.93141 0.90671 1.22740 0.96368 0.98260 0.98065 1.22796 1.02264 0.94835 0.98040 1.22868 0.98039 0.95567 0.91861 1.63037 1.12247 1.00432 1.48141 1.22561 0.87975 1.01997 1.00080 1.23565 1.00679 0.86434 0.93166 0.92262 0.90079 0.91301 0.89059 0.89070 0.92148 0.84615 0.89670 0.89516 0.89766 0.89744 0.91083 0.89970 0.89934 0.92230 0.95346 0.91443 0.90763 0.89151 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 8.92 59.85 0.53 1.16 16 2 N -0.61 -7.42 3.11 -173.56 -0.54 -7.97 16 3 C 0.54 9.33 7.69 -10.98 -0.08 9.24 16 4 O -0.51 -10.90 15.37 5.56 0.09 -10.82 16 5 C -0.15 -2.84 4.71 36.01 0.17 -2.67 16 6 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 7 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 10 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 11 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 C 0.12 1.27 4.57 -67.68 -0.31 0.96 16 16 C 0.09 0.94 8.17 -8.51 -0.07 0.87 16 17 N -0.65 -6.61 3.69 -185.08 -0.68 -7.29 16 18 C 0.55 6.64 7.37 -10.98 -0.08 6.56 16 19 O -0.51 -8.37 17.37 5.56 0.10 -8.28 16 20 C 0.06 0.54 2.68 -67.08 -0.18 0.36 16 21 H 0.08 0.54 7.78 -51.93 -0.40 0.14 16 22 C -0.12 -0.84 6.52 -24.33 -0.16 -1.00 16 23 C -0.14 -0.80 6.93 -24.91 -0.17 -0.97 16 24 C 0.04 0.30 6.90 -2.84 -0.02 0.28 16 25 N -0.51 -4.80 4.69 -232.68 -1.09 -5.89 16 26 C 0.02 0.16 9.12 60.06 0.55 0.71 16 27 C 0.09 0.66 7.85 -8.38 -0.07 0.59 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 30 H 0.07 0.43 6.18 -51.93 -0.32 0.11 16 31 H 0.09 1.59 7.40 -51.91 -0.38 1.20 16 32 H 0.09 1.58 8.11 -51.92 -0.42 1.15 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.14 1.71 7.29 -51.93 -0.38 1.33 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.80 6.97 -51.92 -0.36 0.44 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.74 8.06 -51.93 -0.42 0.33 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.32 7.58 -51.93 -0.39 -0.07 16 43 H 0.03 0.17 8.11 -51.93 -0.42 -0.25 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.54 6.57 -51.93 -0.34 0.20 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -36.57 395.19 -9.90 -46.47 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.53 Total: -2.86 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.31 Total: 3.52 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -1.58 Total: -46.10 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.57 -9.90 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536278059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.152 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds