Wall clock time and date at job start Wed Apr 1 2020 01:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99939 * 2 1 4 4 O 1.21281 * 120.00045 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00269 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47144 * 180.02562 * 5 3 2 7 7 C 1.76199 * 99.99782 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00150 * 359.97438 * 7 6 5 9 9 C 1.38803 * 120.00204 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99481 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00275 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47042 * 89.99983 * 11 9 7 13 13 H 1.48496 * 109.47042 * 209.99826 * 11 9 7 14 14 H 1.48494 * 109.46932 * 330.00073 * 11 9 7 15 15 C 1.46496 * 120.00112 * 179.97438 * 2 1 3 16 16 C 1.53502 * 114.20635 * 60.00346 * 15 2 1 17 17 N 1.47063 * 87.98556 * 220.14876 * 16 15 2 18 18 C 1.34783 * 136.05590 * 207.08239 * 17 16 15 19 19 O 1.21278 * 119.99743 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00123 * 180.02562 * 18 17 16 21 21 H 1.09007 * 110.33378 * 39.19840 * 20 18 17 22 22 C 1.55380 * 110.34912 * 276.86709 * 20 18 17 23 23 C 1.55142 * 101.43737 * 204.11227 * 22 20 18 24 24 C 1.54312 * 103.17714 * 35.64527 * 23 22 20 25 25 N 1.47443 * 107.23612 * 337.62814 * 24 23 22 26 26 C 1.46900 * 111.00227 * 236.74273 * 25 24 23 27 27 C 1.47062 * 87.88688 * 27.33995 * 17 16 15 28 28 H 1.08999 * 109.47322 * 270.00301 * 1 2 3 29 29 H 1.09004 * 109.47260 * 30.00339 * 1 2 3 30 30 H 1.09002 * 109.46977 * 150.00157 * 1 2 3 31 31 H 1.09006 * 109.46908 * 300.00203 * 5 3 2 32 32 H 1.09002 * 109.47117 * 59.99846 * 5 3 2 33 33 H 0.96998 * 119.99822 * 180.02562 * 10 9 7 34 34 H 1.08997 * 113.28584 * 193.06846 * 15 2 1 35 35 H 1.08992 * 113.46976 * 105.36262 * 16 15 2 36 36 H 1.09008 * 113.51614 * 334.93625 * 16 15 2 37 37 H 1.09003 * 111.17446 * 86.06057 * 22 20 18 38 38 H 1.08996 * 111.00619 * 322.09728 * 22 20 18 39 39 H 1.09002 * 110.70816 * 277.17375 * 23 22 20 40 40 H 1.09005 * 110.70106 * 154.11515 * 23 22 20 41 41 H 1.08997 * 109.89327 * 97.03090 * 24 23 22 42 42 H 1.09003 * 109.89220 * 218.21893 * 24 23 22 43 43 H 1.09002 * 109.47062 * 59.87336 * 26 25 24 44 44 H 1.08998 * 109.47146 * 179.86779 * 26 25 24 45 45 H 1.08995 * 109.47111 * 299.87499 * 26 25 24 46 46 H 1.09003 * 113.46691 * 87.43936 * 27 17 16 47 47 H 1.09001 * 113.46937 * 217.87624 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3854 2.4724 -0.0006 6 16 2.5616 3.8481 -0.0012 7 6 1.4416 5.2082 -0.0026 8 1 0.3763 5.0305 -0.0032 9 6 1.9282 6.5081 -0.0028 10 7 3.2266 6.7247 -0.0026 11 14 0.7408 7.9501 -0.0050 12 1 0.4246 8.3330 1.3945 13 1 1.3629 9.1025 -0.7050 14 1 -0.5090 7.5610 -0.7062 15 6 2.1975 -1.2687 0.0006 16 6 1.9060 -2.1643 -1.2116 17 7 1.9169 -3.3163 -0.2975 18 6 2.1841 -4.6334 -0.3993 19 8 2.5088 -5.1054 -1.4683 20 6 2.0783 -5.5198 0.8148 21 1 1.2178 -5.2330 1.4194 22 6 3.3826 -5.4423 1.6556 23 6 3.3424 -6.7966 2.4114 24 6 2.7249 -7.7593 1.3755 25 7 1.9729 -6.9377 0.4094 26 6 0.5683 -7.3619 0.3385 27 6 1.5015 -2.3999 0.7751 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7591 2.5299 -0.8909 32 1 0.7584 2.5303 0.8891 33 1 3.5668 7.6330 -0.0024 34 1 3.2575 -1.1541 0.2269 35 1 2.7144 -2.1823 -1.9423 36 1 0.9322 -1.9791 -1.6650 37 1 3.3524 -4.6050 2.3529 38 1 4.2597 -5.3805 1.0115 39 1 2.7100 -6.7255 3.2964 40 1 4.3485 -7.1164 2.6830 41 1 3.5146 -8.3067 0.8609 42 1 2.0509 -8.4568 1.8729 43 1 0.1076 -7.2588 1.3210 44 1 0.0361 -6.7379 -0.3795 45 1 0.5189 -8.4036 0.0216 46 1 0.4208 -2.2763 0.8461 47 1 1.9653 -2.6188 1.7369 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536278059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:34 Heat of formation + Delta-G solvation = -34.350376 kcal Electronic energy + Delta-G solvation = -27179.109325 eV Core-core repulsion = 23296.151388 eV Total energy + Delta-G solvation = -3882.957937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01237 -40.78434 -39.67494 -38.38126 -35.92305 -34.56087 -33.12855 -31.88152 -30.73515 -29.08121 -27.85779 -27.62025 -27.07946 -26.65128 -23.92067 -22.43205 -21.90899 -20.53196 -19.87038 -19.58738 -18.61633 -18.25306 -17.39557 -17.17235 -16.85684 -16.77642 -16.69004 -16.25419 -15.93067 -15.43649 -14.94142 -14.80456 -14.64291 -14.49524 -14.35621 -14.10519 -13.91343 -13.82608 -13.60875 -13.43565 -13.20764 -13.13405 -13.10490 -13.04378 -12.87494 -12.59423 -12.53242 -12.34800 -12.16763 -12.05448 -11.71542 -11.69804 -11.12065 -11.03718 -10.81486 -10.22936 -9.86423 -9.69576 -9.33554 -8.64495 -8.32517 -6.10267 1.21923 1.41092 1.44141 1.46738 1.53351 1.54885 1.66919 2.19917 2.29893 2.91055 3.01892 3.25332 3.28629 3.35103 3.56261 3.68639 3.74306 3.87910 3.93433 4.06787 4.13183 4.19442 4.29910 4.36066 4.38849 4.41868 4.43728 4.48909 4.51706 4.55565 4.65203 4.73656 4.75558 4.86447 4.90254 4.92029 4.94655 5.02824 5.03530 5.25579 5.44411 5.49929 5.83196 6.02450 6.20287 6.22726 6.60592 7.09044 7.09164 7.12077 8.76532 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.032837 B = 0.001851 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.486286 B =15122.056280 C =15345.568276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.595 5.595 3 C 0.536 3.464 4 O -0.563 6.563 5 C -0.122 4.122 6 S -0.157 6.157 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 0.998 3.002 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.257 1.257 15 C 0.111 3.889 16 C 0.087 3.913 17 N -0.647 5.647 18 C 0.548 3.452 19 O -0.569 6.569 20 C 0.066 3.934 21 H 0.101 0.899 22 C -0.117 4.117 23 C -0.132 4.132 24 C 0.042 3.958 25 N -0.547 5.547 26 C 0.024 3.976 27 C 0.104 3.896 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.270 0.730 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.123 0.877 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 -27.801 7.688 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.324 3.676 4 O -0.441 6.441 5 C -0.273 4.273 6 S 0.070 5.930 7 C -0.690 4.690 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.181 1.181 15 C 0.006 3.994 16 C -0.037 4.037 17 N -0.383 5.383 18 C 0.338 3.662 19 O -0.446 6.446 20 C -0.045 4.045 21 H 0.118 0.882 22 C -0.155 4.155 23 C -0.170 4.170 24 C -0.085 4.085 25 N -0.272 5.272 26 C -0.123 4.123 27 C -0.019 4.019 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.141 0.859 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.864 -28.291 6.593 30.371 hybrid contribution -1.775 1.188 0.136 2.140 sum -10.639 -27.103 6.729 29.884 Atomic orbital electron populations 1.22228 0.76390 1.04982 1.04312 1.47605 1.08414 1.03496 1.73369 1.20187 0.87234 0.85405 0.74806 1.90700 1.15848 1.87424 1.50088 1.23384 1.02656 0.94520 1.06788 1.85644 1.12782 0.97505 1.97042 1.23195 0.94685 0.92544 1.58626 0.89686 1.26127 0.97531 1.01748 0.93858 1.70189 1.14125 1.22397 1.48129 0.84962 0.77951 0.76358 0.78775 1.19288 1.20618 1.18065 1.22731 0.98160 0.81648 0.96890 1.23531 1.03077 0.82011 0.95118 1.49363 1.68036 1.05682 1.15249 1.20617 0.75533 0.79514 0.90512 1.90688 1.48670 1.73545 1.31682 1.22532 1.01390 0.88900 0.91696 0.88151 1.22768 0.94651 1.00146 0.97945 1.22786 1.03078 0.93167 0.97999 1.22898 0.97982 0.95823 0.91767 1.62928 1.13533 1.01018 1.49760 1.22545 0.87109 1.01879 1.00816 1.23661 1.02272 0.83101 0.92860 0.89638 0.90191 0.88348 0.87180 0.86824 0.92094 0.87194 0.92101 0.87474 0.87891 0.92225 0.89097 0.89247 0.91128 0.90440 0.93261 0.92853 0.90347 0.85887 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.92 127.77 1.14 1.90 16 2 N -0.60 -13.12 3.11 -821.40 -2.56 -15.68 16 3 C 0.54 18.38 7.69 87.66 0.67 19.06 16 4 O -0.56 -24.95 15.37 -3.03 -0.05 -25.00 16 5 C -0.12 -4.51 4.71 71.24 0.34 -4.17 16 6 S -0.16 -8.46 20.57 -56.49 -1.16 -9.63 16 7 C -0.54 -30.07 9.50 67.96 0.65 -29.42 16 8 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 9 C 0.01 0.67 5.49 84.86 0.47 1.14 16 10 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 11 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 C 0.11 2.23 4.57 45.55 0.21 2.44 16 16 C 0.09 1.75 8.17 83.18 0.68 2.43 16 17 N -0.65 -12.20 3.69 -857.86 -3.16 -15.36 16 18 C 0.55 12.85 7.37 87.66 0.65 13.49 16 19 O -0.57 -19.25 17.37 -3.02 -0.05 -19.31 16 20 C 0.07 1.05 2.68 44.81 0.12 1.17 16 21 H 0.10 1.06 7.78 -2.38 -0.02 1.05 16 22 C -0.12 -1.50 6.52 32.15 0.21 -1.29 16 23 C -0.13 -1.16 6.93 31.77 0.22 -0.94 16 24 C 0.04 0.51 6.90 86.64 0.60 1.10 16 25 N -0.55 -9.56 4.69 -890.05 -4.18 -13.74 16 26 C 0.02 0.32 9.12 127.69 1.16 1.48 16 27 C 0.10 1.22 7.85 83.27 0.65 1.88 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.07 6.44 -2.39 -0.02 1.06 16 30 H 0.10 0.70 6.18 -2.39 -0.01 0.68 16 31 H 0.11 3.63 7.40 -2.39 -0.02 3.61 16 32 H 0.11 3.67 8.11 -2.39 -0.02 3.65 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 34 H 0.11 2.85 7.29 -2.39 -0.02 2.83 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.72 6.97 -2.38 -0.02 1.70 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.06 8.06 -2.39 -0.02 1.04 16 39 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.63 7.58 -2.39 -0.02 0.62 16 43 H 0.05 0.42 8.11 -2.39 -0.02 0.40 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.12 0.75 6.57 -2.39 -0.02 0.74 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -85.73 395.19 -0.13 -85.86 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.96 Total: 13.00 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 7.76 Total: 10.26 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -9.61 Total: -99.84 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.10 Total: -44.30 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -85.73 -0.13 -85.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536278059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.509 kcal (2) G-P(sol) polarization free energy of solvation -85.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds