Wall clock time and date at job start Wed Apr 1 2020 01:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.36941 * 119.99754 * 275.31085 * 3 2 1 5 5 H 1.08001 * 120.00438 * 37.57109 * 4 3 2 6 6 C 1.38813 * 119.99907 * 217.58217 * 4 3 2 7 7 N 1.31621 * 120.00321 * 21.41466 * 6 4 3 8 8 Si 1.86799 * 119.99767 * 201.42452 * 6 4 3 9 9 H 1.48499 * 109.47542 * 89.99645 * 8 6 4 10 10 H 1.48508 * 109.46858 * 209.99549 * 8 6 4 11 11 H 1.48498 * 109.47377 * 329.99437 * 8 6 4 12 12 C 1.46495 * 120.00575 * 95.30654 * 3 2 1 13 13 C 1.53009 * 109.47016 * 270.00209 * 12 3 2 14 14 C 1.52998 * 109.46963 * 179.97438 * 13 12 3 15 15 N 1.46502 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99815 * 180.02562 * 15 14 13 17 17 O 1.21680 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.46687 * 119.99380 * 180.02562 * 16 15 14 19 19 S 1.76211 * 126.13251 * 359.68680 * 18 16 15 20 20 C 1.70958 * 90.31456 * 179.97438 * 19 18 16 21 21 C 1.50694 * 124.80653 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46991 * 270.32728 * 21 20 19 23 23 C 1.42900 * 114.00080 * 179.97438 * 22 21 20 24 24 N 1.29431 * 110.38750 * 0.34546 * 20 19 18 25 25 C 1.30940 * 117.36620 * 359.72601 * 24 20 19 26 26 C 1.50702 * 122.90393 * 179.97438 * 25 24 20 27 27 H 1.08992 * 109.47159 * 300.00636 * 1 2 3 28 28 H 1.09000 * 109.46704 * 60.00717 * 1 2 3 29 29 H 1.08997 * 109.47135 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46918 * 239.99485 * 2 1 3 31 31 H 1.09007 * 109.46539 * 119.99655 * 2 1 3 32 32 H 0.96994 * 120.00279 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47507 * 150.00355 * 12 3 2 34 34 H 1.09005 * 109.46959 * 29.99594 * 12 3 2 35 35 H 1.08995 * 109.46863 * 59.99752 * 13 12 3 36 36 H 1.08997 * 109.46761 * 299.99822 * 13 12 3 37 37 H 1.09000 * 109.47572 * 300.00270 * 14 13 12 38 38 H 1.09002 * 109.47114 * 59.99961 * 14 13 12 39 39 H 0.96999 * 119.99641 * 0.02562 * 15 14 13 40 40 H 1.08999 * 109.46947 * 30.32664 * 21 20 19 41 41 H 1.09003 * 109.47453 * 150.32936 * 21 20 19 42 42 H 1.08999 * 109.47107 * 59.99768 * 23 22 21 43 43 H 1.08997 * 109.47272 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.47323 * 300.00131 * 23 22 21 45 45 H 1.09003 * 109.47164 * 270.00296 * 26 25 24 46 46 H 1.08999 * 109.47304 * 30.00562 * 26 25 24 47 47 H 1.09004 * 109.47147 * 150.00575 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9629 6 6 3.2113 2.9287 -1.3730 7 7 4.3027 2.7980 -0.6491 8 14 3.0995 4.2792 -2.6587 9 1 2.5377 5.5067 -2.0398 10 1 4.4551 4.5692 -3.1911 11 1 2.2168 3.8355 -3.7673 12 6 2.3732 2.0327 1.2632 13 6 1.1425 2.7384 1.8364 14 6 1.5129 3.4183 3.1559 15 7 0.3347 4.0945 3.7045 16 6 0.4246 4.7657 4.8698 17 8 1.4841 4.8097 5.4665 18 6 -0.7553 5.4422 5.4192 19 16 -2.3595 5.4884 4.6915 20 6 -2.9346 6.4315 5.9963 21 6 -4.3482 6.9342 6.1369 22 8 -4.4635 8.2131 5.5097 23 6 -5.7722 8.7819 5.5858 24 7 -1.9822 6.6582 6.8430 25 6 -0.8053 6.1503 6.5753 26 6 0.3903 6.3368 7.4735 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 5.0489 3.4030 -0.7831 33 1 3.1616 2.7641 1.0859 34 1 2.7254 1.2834 1.9721 35 1 0.3541 2.0070 2.0137 36 1 0.7903 3.4876 1.1274 37 1 1.8650 2.6688 3.8647 38 1 2.3016 4.1497 2.9790 39 1 -0.5100 4.0591 3.2290 40 1 -5.0324 6.2326 5.6599 41 1 -4.5985 7.0241 7.1940 42 1 -6.0524 8.9100 6.6313 43 1 -5.7766 9.7512 5.0875 44 1 -6.4857 8.1185 5.0971 45 1 0.9305 7.2360 7.1773 46 1 0.0567 6.4370 8.5064 47 1 1.0485 5.4723 7.3865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566574243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:30 Heat of formation + Delta-G solvation = -23.465336 kcal Electronic energy + Delta-G solvation = -26830.494276 eV Core-core repulsion = 22948.008349 eV Total energy + Delta-G solvation = -3882.485926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58416 -39.26164 -38.21274 -36.46954 -34.88745 -32.72096 -31.87386 -31.43216 -29.17319 -28.96014 -28.07335 -26.51687 -25.25578 -23.71212 -23.11011 -21.74264 -21.11391 -20.22880 -19.45725 -18.33682 -17.13767 -17.05550 -16.71232 -16.22840 -15.90443 -15.70714 -15.24091 -15.01771 -14.66868 -14.22402 -13.99867 -13.97403 -13.52757 -13.33666 -13.25832 -12.85555 -12.68540 -12.63228 -12.50972 -12.37214 -11.90779 -11.61423 -11.57854 -11.46395 -11.18246 -11.04343 -10.77317 -10.60706 -10.46615 -10.39071 -10.16808 -10.05542 -9.85028 -9.79189 -9.65729 -9.56146 -9.13563 -8.89220 -8.48188 -6.57912 -5.79429 -3.38925 -0.09855 0.84683 1.27117 2.12384 3.04096 3.12433 3.25602 3.35365 3.43489 3.43839 3.83555 4.37815 4.46603 4.68795 4.71313 4.77958 4.85839 4.89455 4.94144 5.21287 5.22725 5.38301 5.52918 5.58678 5.61425 5.70572 5.80508 5.95336 6.05621 6.13088 6.26285 6.33307 6.39877 6.42521 6.49218 6.55826 6.70633 6.73414 6.90064 7.06875 7.15953 7.29715 7.48972 7.66108 7.81834 8.12503 8.51662 9.18871 9.81049 10.39845 11.20060 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.002374 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.000295 B =11791.143863 C =12181.708049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.148 4.148 14 C 0.121 3.879 15 N -0.718 5.718 16 C 0.592 3.408 17 O -0.522 6.522 18 C -0.288 4.288 19 S 0.191 5.809 20 C 0.049 3.951 21 C 0.138 3.862 22 O -0.382 6.382 23 C 0.032 3.968 24 N -0.458 5.458 25 C 0.144 3.856 26 C -0.089 4.089 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.026 0.974 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.396 0.604 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 6.630 14.841 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.188 4.188 14 C -0.002 4.002 15 N -0.368 5.368 16 C 0.376 3.624 17 O -0.401 6.401 18 C -0.413 4.413 19 S 0.448 5.552 20 C -0.227 4.227 21 C 0.059 3.941 22 O -0.300 6.300 23 C -0.065 4.065 24 N -0.175 5.175 25 C 0.005 3.995 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.230 0.770 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.314 6.699 14.632 24.380 hybrid contribution -0.209 0.879 -0.275 0.945 sum -18.523 7.578 14.357 24.630 Atomic orbital electron populations 1.22370 1.00194 0.98893 1.01089 1.20849 0.91651 0.87388 0.98743 1.43740 1.76035 1.08185 1.02480 1.18988 1.04656 1.21229 0.94156 0.92297 1.25195 0.94209 1.01288 0.98080 1.69994 1.03191 1.37196 1.42419 0.86416 0.76971 0.82642 0.81496 1.21293 1.21716 1.20275 1.20792 0.94325 0.96670 0.85804 1.22570 1.02563 0.99941 0.93773 1.21578 0.86578 0.96226 0.95811 1.46114 1.14849 1.53339 1.22507 1.16669 0.86071 0.78475 0.81186 1.90789 1.28272 1.61563 1.59430 1.25715 0.98934 1.13576 1.03045 1.83878 1.01489 1.46575 1.23229 1.26803 0.99704 1.01369 0.94775 1.20827 0.87853 0.86076 0.99383 1.87978 1.31297 1.32728 1.78040 1.22825 0.83486 0.98987 1.01187 1.66020 0.99384 1.21620 1.30443 1.20675 0.93352 0.92282 0.93143 1.20679 0.92397 1.04881 0.96832 0.93839 0.93257 0.94627 0.93866 0.94828 0.93479 0.88683 0.95588 0.92980 0.91624 0.91507 0.91038 0.77017 0.90514 0.89721 0.93529 0.88985 0.93543 0.89974 0.90768 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -14.01 2.43 -173.23 -0.42 -14.43 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.05 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.16 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.09 11.47 55.49 0.64 -24.45 16 8 Si 0.90 21.27 29.60 -169.99 -5.03 16.24 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.37 5.33 -4.04 -0.02 3.34 16 13 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16 14 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 15 N -0.72 -10.45 5.55 -61.62 -0.34 -10.80 16 16 C 0.59 9.11 7.78 -12.85 -0.10 9.01 16 17 O -0.52 -9.32 14.27 5.21 0.07 -9.25 16 18 C -0.29 -3.87 6.48 -37.09 -0.24 -4.11 16 19 S 0.19 1.98 22.31 -107.50 -2.40 -0.42 16 20 C 0.05 0.53 7.02 -13.29 -0.09 0.43 16 21 C 0.14 1.08 6.51 36.00 0.23 1.31 16 22 O -0.38 -3.52 10.69 -35.23 -0.38 -3.89 16 23 C 0.03 0.17 11.01 101.05 1.11 1.28 16 24 N -0.46 -5.87 10.50 -7.70 -0.08 -5.95 16 25 C 0.14 1.91 6.79 -83.89 -0.57 1.34 16 26 C -0.09 -1.06 9.70 36.01 0.35 -0.71 16 27 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.92 -0.41 0.24 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.10 2.43 5.52 -51.93 -0.29 2.14 16 34 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.05 0.88 6.64 -51.93 -0.34 0.54 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.40 4.97 7.66 -40.82 -0.31 4.66 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.34 6.01 -51.93 -0.31 1.02 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -31.73 401.31 -8.73 -40.46 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.46 Total: 1.85 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.62 Total: 4.59 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.21 Total: -55.63 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.30 Total: -13.14 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.40 Total: -0.42 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.73 -8.73 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566574243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds