Wall clock time and date at job start Wed Apr 1 2020 00:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00232 * 2 1 4 4 N 1.46499 * 109.47138 * 125.00168 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.28062 * 4 3 2 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 3 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 3 8 8 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 9 9 C 1.52995 * 109.47490 * 59.99635 * 7 5 4 10 10 N 1.46899 * 109.46987 * 179.97438 * 7 5 4 11 11 C 1.46898 * 111.00358 * 154.99941 * 10 7 5 12 12 H 1.08996 * 110.64387 * 34.29641 * 11 10 7 13 13 C 1.55158 * 110.72464 * 157.44008 * 11 10 7 14 14 C 1.55120 * 101.48868 * 153.73265 * 13 11 10 15 15 N 1.47426 * 104.94200 * 323.22096 * 14 13 11 16 16 C 1.34774 * 125.64652 * 204.03590 * 15 14 13 17 17 O 1.21282 * 119.99625 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00144 * 359.96111 * 16 15 14 19 19 S 1.81009 * 109.47046 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99661 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00482 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99662 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00238 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00337 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46665 * 90.00182 * 24 22 20 26 26 H 1.48497 * 109.47596 * 210.00358 * 24 22 20 27 27 H 1.48500 * 109.46834 * 330.00607 * 24 22 20 28 28 C 1.47027 * 108.70369 * 24.00335 * 15 14 13 29 29 H 1.07999 * 119.99920 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00318 * 180.02562 * 2 1 3 32 32 H 1.09009 * 109.46601 * 5.00071 * 3 2 1 33 33 H 1.08998 * 109.47035 * 245.00579 * 3 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.46983 * 299.99719 * 9 7 5 36 36 H 1.08995 * 109.47139 * 60.00165 * 9 7 5 37 37 H 1.09003 * 109.47199 * 179.97438 * 9 7 5 38 38 H 1.00904 * 111.00507 * 31.04231 * 10 7 5 39 39 H 1.09000 * 110.99917 * 271.93971 * 13 11 10 40 40 H 1.09006 * 111.00144 * 35.78912 * 13 11 10 41 41 H 1.08999 * 110.41915 * 204.29400 * 14 13 11 42 42 H 1.08998 * 110.20650 * 82.03955 * 14 13 11 43 43 H 1.08998 * 109.47366 * 299.99908 * 18 16 15 44 44 H 1.09000 * 109.47024 * 60.00487 * 18 16 15 45 45 H 0.97000 * 120.00501 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.88209 * 239.51955 * 28 15 14 47 47 H 1.09000 * 110.00945 * 118.42392 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7747 2.4111 1.3363 6 8 3.7108 3.3580 0.5812 7 6 4.7272 2.4411 2.5037 8 1 4.1662 2.3417 3.4330 9 6 5.7206 1.2840 2.3814 10 7 5.4583 3.7152 2.5065 11 6 5.9218 4.0533 3.8588 12 1 6.1873 3.1517 4.4107 13 6 7.1231 5.0335 3.7985 14 6 6.9982 5.7598 5.1634 15 7 5.5479 5.9010 5.3875 16 6 4.9605 6.8294 6.1683 17 8 3.7530 6.8523 6.2793 18 6 5.8040 7.8387 6.9034 19 16 4.7313 8.9408 7.8580 20 6 5.9438 9.9867 8.5931 21 1 6.9917 9.8272 8.3860 22 6 5.5521 11.0157 9.4383 23 7 6.4578 11.7974 9.9871 24 14 3.7396 11.2920 9.7959 25 1 3.3433 10.4974 10.9862 26 1 3.5016 12.7336 10.0615 27 1 2.9333 10.8647 8.6245 28 6 4.8485 4.8618 4.6177 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7355 35 1 5.1784 0.3384 2.3792 36 1 6.2816 1.3834 1.4522 37 1 6.4098 1.3060 3.2256 38 1 4.8931 4.4574 2.1220 39 1 8.0661 4.4917 3.7258 40 1 7.0131 5.7358 2.9721 41 1 7.4721 6.7403 5.1173 42 1 7.4471 5.1572 5.9530 43 1 6.4855 7.3204 7.5780 44 1 6.3786 8.4239 6.1855 45 1 6.1842 12.5163 10.5781 46 1 4.1625 5.3246 3.9083 47 1 4.2977 4.2056 5.2916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566759906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:17 Heat of formation + Delta-G solvation = -44.545227 kcal Electronic energy + Delta-G solvation = -26562.530403 eV Core-core repulsion = 22679.130384 eV Total energy + Delta-G solvation = -3883.400019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58348 -39.81045 -37.80768 -36.38424 -35.44337 -33.43271 -32.43580 -31.84451 -29.88784 -29.65228 -27.20611 -26.93872 -25.60458 -24.15229 -22.99256 -21.14201 -20.99285 -20.20986 -19.43688 -17.99309 -17.54951 -17.19863 -16.64962 -16.46336 -16.09999 -15.75809 -15.17212 -14.90877 -14.89214 -14.63788 -14.24577 -14.01585 -13.84445 -13.67950 -13.47338 -13.13224 -12.90422 -12.83514 -12.81410 -12.63339 -12.44802 -12.14091 -11.92596 -11.81549 -11.74120 -11.64889 -11.26102 -11.04210 -11.00292 -10.60463 -10.49046 -10.03447 -9.85933 -9.57490 -9.54045 -8.99930 -8.93429 -8.58464 -8.49304 -6.91864 -6.28462 -4.00321 1.47397 2.17492 2.64938 2.76862 2.93869 3.18532 3.33446 3.51254 3.58018 3.71592 4.13741 4.21671 4.26799 4.33912 4.36583 4.48556 4.59016 4.66228 4.75523 4.80552 4.98406 5.00867 5.09671 5.10659 5.13794 5.19440 5.21730 5.25550 5.31882 5.47381 5.51659 5.59204 5.70096 5.74263 5.77306 5.80913 5.90954 5.92583 6.01604 6.08390 6.30233 6.51013 6.89130 7.02451 7.55601 7.72707 7.94543 8.41845 8.42630 9.17713 10.80689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.001891 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.700519 B =14801.799302 C =15897.504555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.528 6.528 7 C 0.064 3.936 8 H 0.075 0.925 9 C -0.136 4.136 10 N -0.658 5.658 11 C 0.076 3.924 12 H 0.097 0.903 13 C -0.117 4.117 14 C 0.097 3.903 15 N -0.621 5.621 16 C 0.546 3.454 17 O -0.519 6.519 18 C -0.117 4.117 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.082 3.918 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.360 0.640 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.066 0.934 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 -28.253 -19.222 34.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.299 3.701 6 O -0.403 6.403 7 C -0.050 4.050 8 H 0.092 0.908 9 C -0.194 4.194 10 N -0.293 5.293 11 C -0.035 4.035 12 H 0.115 0.885 13 C -0.156 4.156 14 C -0.026 4.026 15 N -0.359 5.359 16 C 0.334 3.666 17 O -0.393 6.393 18 C -0.267 4.267 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.044 4.044 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.184 0.816 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.962 -27.567 -19.661 34.091 hybrid contribution -0.071 0.108 0.922 0.931 sum -4.034 -27.459 -18.739 33.487 Atomic orbital electron populations 1.24030 0.95813 1.02611 0.97563 1.22984 0.96250 0.98002 1.02596 1.20432 0.91801 0.95730 0.89766 1.45942 1.41135 1.19954 1.30933 1.20689 0.80521 0.82303 0.86627 1.90734 1.67453 1.35289 1.46852 1.21525 0.93905 0.93547 0.95980 0.90762 1.21770 0.98833 0.94903 1.03905 1.60601 1.44138 1.04554 1.20035 1.22761 0.94530 0.98032 0.88205 0.88533 1.22808 0.98046 0.97873 0.96871 1.22436 0.81590 1.01663 0.96958 1.48358 1.07562 1.31942 1.48047 1.20036 0.88303 0.80241 0.77976 1.90705 1.14402 1.71799 1.62433 1.23250 1.02330 0.99112 1.02041 1.84797 1.13034 1.35348 1.58495 1.22306 0.94450 1.17216 1.32874 0.89355 1.24703 0.98205 0.94257 0.94084 1.69936 1.33557 1.18051 1.30102 0.86740 0.85394 0.78420 0.81341 1.19213 1.19912 1.15941 1.22670 0.95812 0.90313 0.95559 0.88058 0.87751 0.86616 0.90937 0.90486 0.76318 0.92134 0.91189 0.91181 0.81604 0.89264 0.89852 0.89838 0.91087 0.88520 0.88458 0.91941 0.91622 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 14.32 29.01 0.42 -0.21 16 2 C -0.18 -0.72 9.63 -36.02 -0.35 -1.07 16 3 C 0.15 0.88 6.11 -5.19 -0.03 0.84 16 4 N -0.73 -4.26 5.44 -61.47 -0.33 -4.60 16 5 C 0.51 4.47 7.18 -10.99 -0.08 4.39 16 6 O -0.53 -6.79 15.65 5.55 0.09 -6.71 16 7 C 0.06 0.44 2.90 -68.87 -0.20 0.24 16 8 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 9 C -0.14 -0.66 9.30 37.16 0.35 -0.31 16 10 N -0.66 -5.68 6.05 -99.04 -0.60 -6.28 16 11 C 0.08 0.62 3.00 -65.88 -0.20 0.43 16 12 H 0.10 0.65 7.22 -51.93 -0.37 0.28 16 13 C -0.12 -0.95 6.79 -24.47 -0.17 -1.12 16 14 C 0.10 0.99 6.69 -2.41 -0.02 0.97 16 15 N -0.62 -8.74 3.33 -170.38 -0.57 -9.31 16 16 C 0.55 10.34 7.87 -10.99 -0.09 10.25 16 17 O -0.52 -11.81 16.19 5.56 0.09 -11.72 16 18 C -0.12 -2.34 5.16 36.00 0.19 -2.16 16 19 S -0.14 -3.70 18.55 -107.50 -1.99 -5.70 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 24 Si 0.86 22.00 27.74 -169.99 -4.71 17.28 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 28 C 0.08 0.96 6.54 -3.06 -0.02 0.94 16 29 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 30 H 0.10 0.28 8.06 -52.48 -0.42 -0.14 16 31 H 0.12 0.32 8.06 -52.49 -0.42 -0.11 16 32 H 0.07 0.52 7.79 -51.92 -0.40 0.12 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 1.29 7.88 -40.82 -0.32 0.97 16 35 H 0.06 0.17 7.56 -51.93 -0.39 -0.22 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.31 7.48 -51.93 -0.39 -0.08 16 38 H 0.36 3.83 6.82 -39.29 -0.27 3.56 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.85 7.48 -51.93 -0.39 0.47 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 44 H 0.10 1.83 7.85 -51.92 -0.41 1.42 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -36.67 401.62 -8.72 -45.39 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.54 Total: 0.37 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 0.02 Total: 1.10 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.73 Total: -46.07 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.67 -8.72 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566759906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.846 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds