Wall clock time and date at job start Wed Apr 1 2020 00:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00232 * 2 1 4 4 N 1.46499 * 109.47138 * 125.00168 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.28062 * 4 3 2 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 3 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 3 8 8 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 9 9 C 1.52995 * 109.47490 * 59.99635 * 7 5 4 10 10 N 1.46899 * 109.46987 * 179.97438 * 7 5 4 11 11 C 1.46898 * 111.00358 * 154.99941 * 10 7 5 12 12 H 1.08996 * 110.64387 * 34.29641 * 11 10 7 13 13 C 1.55158 * 110.72464 * 157.44008 * 11 10 7 14 14 C 1.55120 * 101.48868 * 153.73265 * 13 11 10 15 15 N 1.47426 * 104.94200 * 323.22096 * 14 13 11 16 16 C 1.34774 * 125.64652 * 204.03590 * 15 14 13 17 17 O 1.21282 * 119.99625 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00144 * 359.96111 * 16 15 14 19 19 S 1.81009 * 109.47046 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99661 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00482 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99662 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00238 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00337 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46665 * 90.00182 * 24 22 20 26 26 H 1.48497 * 109.47596 * 210.00358 * 24 22 20 27 27 H 1.48500 * 109.46834 * 330.00607 * 24 22 20 28 28 C 1.47027 * 108.70369 * 24.00335 * 15 14 13 29 29 H 1.07999 * 119.99920 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99772 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00318 * 180.02562 * 2 1 3 32 32 H 1.09009 * 109.46601 * 5.00071 * 3 2 1 33 33 H 1.08998 * 109.47035 * 245.00579 * 3 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 35 35 H 1.09001 * 109.46983 * 299.99719 * 9 7 5 36 36 H 1.08995 * 109.47139 * 60.00165 * 9 7 5 37 37 H 1.09003 * 109.47199 * 179.97438 * 9 7 5 38 38 H 1.00904 * 111.00507 * 31.04231 * 10 7 5 39 39 H 1.09000 * 110.99917 * 271.93971 * 13 11 10 40 40 H 1.09006 * 111.00144 * 35.78912 * 13 11 10 41 41 H 1.08999 * 110.41915 * 204.29400 * 14 13 11 42 42 H 1.08998 * 110.20650 * 82.03955 * 14 13 11 43 43 H 1.08998 * 109.47366 * 299.99908 * 18 16 15 44 44 H 1.09000 * 109.47024 * 60.00487 * 18 16 15 45 45 H 0.97000 * 120.00501 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.88209 * 239.51955 * 28 15 14 47 47 H 1.09000 * 110.00945 * 118.42392 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7747 2.4111 1.3363 6 8 3.7108 3.3580 0.5812 7 6 4.7272 2.4411 2.5037 8 1 4.1662 2.3417 3.4330 9 6 5.7206 1.2840 2.3814 10 7 5.4583 3.7152 2.5065 11 6 5.9218 4.0533 3.8588 12 1 6.1873 3.1517 4.4107 13 6 7.1231 5.0335 3.7985 14 6 6.9982 5.7598 5.1634 15 7 5.5479 5.9010 5.3875 16 6 4.9605 6.8294 6.1683 17 8 3.7530 6.8523 6.2793 18 6 5.8040 7.8387 6.9034 19 16 4.7313 8.9408 7.8580 20 6 5.9438 9.9867 8.5931 21 1 6.9917 9.8272 8.3860 22 6 5.5521 11.0157 9.4383 23 7 6.4578 11.7974 9.9871 24 14 3.7396 11.2920 9.7959 25 1 3.3433 10.4974 10.9862 26 1 3.5016 12.7336 10.0615 27 1 2.9333 10.8647 8.6245 28 6 4.8485 4.8618 4.6177 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5746 1.7355 35 1 5.1784 0.3384 2.3792 36 1 6.2816 1.3834 1.4522 37 1 6.4098 1.3060 3.2256 38 1 4.8931 4.4574 2.1220 39 1 8.0661 4.4917 3.7258 40 1 7.0131 5.7358 2.9721 41 1 7.4721 6.7403 5.1173 42 1 7.4471 5.1572 5.9530 43 1 6.4855 7.3204 7.5780 44 1 6.3786 8.4239 6.1855 45 1 6.1842 12.5163 10.5781 46 1 4.1625 5.3246 3.9083 47 1 4.2977 4.2056 5.2916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566759906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:16 Heat of formation + Delta-G solvation = -72.584468 kcal Electronic energy + Delta-G solvation = -26563.746276 eV Core-core repulsion = 22679.130384 eV Total energy + Delta-G solvation = -3884.615892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38087 -40.86261 -38.91428 -36.96275 -36.26525 -34.68934 -33.96707 -32.76095 -30.97417 -30.63101 -28.19202 -27.78732 -27.41608 -24.94062 -23.79061 -21.83076 -21.54431 -20.83789 -20.63622 -19.64946 -18.47979 -18.14871 -17.80314 -17.28515 -17.13416 -16.70170 -16.65905 -16.27596 -15.89512 -15.62949 -15.29074 -14.95928 -14.92300 -14.80008 -14.47521 -14.14423 -13.98229 -13.73546 -13.57769 -13.36395 -13.33430 -13.28330 -13.08718 -13.02468 -12.76823 -12.70223 -12.44329 -12.31393 -12.08053 -11.89806 -11.70873 -11.18693 -11.09926 -11.04150 -10.56691 -10.54446 -10.10842 -9.83692 -9.54162 -9.03426 -8.53031 -6.24712 0.93318 1.13767 1.29439 1.43080 1.45965 1.50692 1.52311 1.99209 2.23221 2.24625 2.65593 2.85028 3.01877 3.40857 3.60902 3.66230 3.78058 3.83594 4.01419 4.12284 4.13182 4.15321 4.19543 4.30429 4.35067 4.38027 4.52602 4.60520 4.61698 4.71245 4.79045 4.87382 4.94913 4.97919 5.07330 5.20908 5.27400 5.29021 5.35601 5.61656 5.69345 5.74804 5.89479 6.09719 6.13434 6.30011 6.48203 6.91961 7.00061 7.14654 8.59229 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019363 B = 0.001891 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.700519 B =14801.799302 C =15897.504555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.144 3.856 4 N -0.711 5.711 5 C 0.507 3.493 6 O -0.578 6.578 7 C 0.064 3.936 8 H 0.089 0.911 9 C -0.131 4.131 10 N -0.662 5.662 11 C 0.091 3.909 12 H 0.125 0.875 13 C -0.108 4.108 14 C 0.087 3.913 15 N -0.612 5.612 16 C 0.544 3.456 17 O -0.568 6.568 18 C -0.101 4.101 19 S -0.178 6.178 20 C -0.529 4.529 21 H 0.064 0.936 22 C 0.048 3.952 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.240 1.240 28 C 0.078 3.922 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.418 0.582 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.347 0.653 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.277 0.723 46 H 0.046 0.954 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -31.179 -19.498 36.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.021 3.979 4 N -0.364 5.364 5 C 0.294 3.706 6 O -0.457 6.457 7 C -0.049 4.049 8 H 0.107 0.893 9 C -0.189 4.189 10 N -0.295 5.295 11 C -0.020 4.020 12 H 0.142 0.858 13 C -0.146 4.146 14 C -0.035 4.035 15 N -0.347 5.347 16 C 0.332 3.668 17 O -0.447 6.447 18 C -0.252 4.252 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.158 4.158 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.182 1.182 27 H -0.164 1.164 28 C -0.047 4.047 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.255 0.745 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.169 0.831 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.496 -30.572 -19.948 36.671 hybrid contribution -0.127 0.888 0.885 1.260 sum -3.623 -29.684 -19.063 35.463 Atomic orbital electron populations 1.24183 0.95900 1.03123 0.96937 1.22954 0.96207 0.97457 1.03066 1.20412 0.91546 0.96542 0.89422 1.45859 1.40018 1.19712 1.30836 1.21125 0.80737 0.82079 0.86655 1.90713 1.69105 1.37175 1.48743 1.21673 0.94182 0.93475 0.95540 0.89330 1.21778 0.98528 0.94847 1.03697 1.60687 1.44255 1.04815 1.19786 1.22786 0.93034 0.98454 0.87772 0.85752 1.22806 0.99285 0.97558 0.94996 1.22804 0.78972 1.02604 0.99070 1.48329 1.09707 1.30626 1.46051 1.19751 0.87458 0.80909 0.78643 1.90681 1.16106 1.73336 1.64548 1.23195 1.01461 0.98570 1.01928 1.84743 1.14324 1.36494 1.59590 1.22428 0.94109 1.17994 1.33099 0.91799 1.25526 1.02193 0.94082 0.93966 1.70007 1.35500 1.18797 1.30913 0.85891 0.80431 0.79169 0.81029 1.18549 1.18175 1.16401 1.22909 0.96818 0.89795 0.95165 0.88733 0.86141 0.84718 0.92645 0.91457 0.74485 0.89755 0.92496 0.89967 0.83126 0.86294 0.90981 0.89850 0.88696 0.86793 0.87163 0.91310 0.93543 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 14.32 67.78 0.97 -0.07 16 2 C -0.18 -1.17 9.63 25.65 0.25 -0.92 16 3 C 0.14 1.70 6.11 85.63 0.52 2.22 16 4 N -0.71 -7.53 5.44 -466.78 -2.54 -10.07 16 5 C 0.51 8.53 7.18 87.66 0.63 9.16 16 6 O -0.58 -15.35 15.65 -3.04 -0.05 -15.40 16 7 C 0.06 0.75 2.90 44.17 0.13 0.88 16 8 H 0.09 0.82 7.83 -2.39 -0.02 0.80 16 9 C -0.13 -0.84 9.30 71.98 0.67 -0.17 16 10 N -0.66 -10.37 6.05 -467.25 -2.83 -13.20 16 11 C 0.09 1.24 3.00 46.11 0.14 1.38 16 12 H 0.12 1.10 7.22 -2.39 -0.02 1.09 16 13 C -0.11 -1.43 6.79 32.06 0.22 -1.21 16 14 C 0.09 1.54 6.69 86.93 0.58 2.12 16 15 N -0.61 -16.35 3.33 -811.36 -2.70 -19.05 16 16 C 0.54 20.37 7.87 87.66 0.69 21.06 16 17 O -0.57 -26.14 16.19 -3.03 -0.05 -26.19 16 18 C -0.10 -3.98 5.16 71.23 0.37 -3.62 16 19 S -0.18 -9.26 18.55 -56.49 -1.05 -10.31 16 20 C -0.53 -31.16 10.04 67.95 0.68 -30.48 16 21 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 22 C 0.05 2.84 5.50 84.86 0.47 3.31 16 23 N -0.91 -55.86 13.97 21.65 0.30 -55.56 16 24 Si 0.91 45.56 27.74 68.60 1.90 47.46 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.24 -12.08 6.74 99.48 0.67 -11.41 16 28 C 0.08 1.73 6.54 86.73 0.57 2.29 16 29 H 0.09 0.72 7.84 -2.91 -0.02 0.70 16 30 H 0.12 0.39 8.06 -2.91 -0.02 0.37 16 31 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 32 H 0.06 0.84 7.79 -2.38 -0.02 0.83 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.42 1.70 7.88 -92.71 -0.73 0.97 16 35 H 0.08 0.15 7.56 -2.39 -0.02 0.13 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.37 7.48 -2.39 -0.02 0.36 16 38 H 0.35 7.35 6.82 -89.69 -0.61 6.74 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.08 1.51 7.48 -2.39 -0.02 1.49 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 44 H 0.11 4.06 7.85 -2.40 -0.02 4.04 16 45 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.05 1.22 7.53 -2.39 -0.02 1.21 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -82.28 401.62 -0.53 -82.81 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.40 Total: 13.56 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.88 Total: 5.95 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -7.76 Total: -97.88 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.10 Total: -41.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.31 kcal Total: -82.28 -0.53 -82.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566759906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.223 kcal (2) G-P(sol) polarization free energy of solvation -82.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds