Wall clock time and date at job start Wed Apr 1 2020 00:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99660 * 2 1 4 4 N 1.46500 * 109.47251 * 124.99786 * 3 2 1 5 5 C 1.34771 * 119.99932 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00509 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00119 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.47290 * 60.00095 * 7 5 4 9 9 C 1.53009 * 109.46961 * 300.00165 * 7 5 4 10 10 N 1.46897 * 109.47493 * 180.02562 * 7 5 4 11 11 C 1.46897 * 110.99974 * 204.99964 * 10 7 5 12 12 H 1.08993 * 110.78200 * 36.78412 * 11 10 7 13 13 C 1.55165 * 110.71796 * 160.02151 * 11 10 7 14 14 C 1.54915 * 101.57980 * 153.86496 * 13 11 10 15 15 N 1.47425 * 104.83334 * 322.99105 * 14 13 11 16 16 C 1.34777 * 125.65136 * 204.16738 * 15 14 13 17 17 O 1.21281 * 120.00173 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99667 * 359.95409 * 16 15 14 19 19 S 1.80995 * 109.46960 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00030 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99969 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00079 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47009 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47011 * 119.99970 * 24 22 20 27 27 H 1.48493 * 109.47020 * 239.99848 * 24 22 20 28 28 C 1.47022 * 108.70334 * 24.12789 * 15 14 13 29 29 H 1.07997 * 119.99437 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00081 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00081 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47282 * 4.99421 * 3 2 1 33 33 H 1.09008 * 109.46605 * 244.99503 * 3 2 1 34 34 H 0.97001 * 119.99852 * 359.97438 * 4 3 2 35 35 H 1.08993 * 109.47125 * 299.99897 * 9 7 5 36 36 H 1.08996 * 109.46528 * 60.00033 * 9 7 5 37 37 H 1.09003 * 109.47073 * 179.97438 * 9 7 5 38 38 H 1.00897 * 110.99752 * 328.95371 * 10 7 5 39 39 H 1.08995 * 111.00547 * 271.93828 * 13 11 10 40 40 H 1.09001 * 111.00003 * 35.79407 * 13 11 10 41 41 H 1.08997 * 110.36462 * 204.15099 * 14 13 11 42 42 H 1.08999 * 110.46102 * 81.87572 * 14 13 11 43 43 H 1.08997 * 109.46784 * 300.00107 * 18 16 15 44 44 H 1.09002 * 109.46871 * 60.00068 * 18 16 15 45 45 H 0.97000 * 119.99957 * 180.02562 * 23 22 20 46 46 H 1.08997 * 109.88723 * 239.52626 * 28 15 14 47 47 H 1.09000 * 110.01436 * 118.43179 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 3.7788 2.4088 1.3328 6 8 3.7150 3.3557 0.5777 7 6 4.7353 2.4368 2.4971 8 1 5.4400 1.6099 2.4083 9 6 3.9517 2.3009 3.8043 10 7 5.4698 3.7089 2.4970 11 6 6.7613 3.5711 3.1833 12 1 7.2041 2.5957 2.9820 13 6 7.7290 4.7099 2.7657 14 6 8.6552 4.8007 4.0042 15 7 7.7682 4.5613 5.1572 16 6 7.9913 4.9772 6.4196 17 8 7.1891 4.7224 7.2928 18 6 9.2379 5.7586 6.7463 19 16 9.2487 6.1680 8.5092 20 6 10.7696 7.0520 8.6088 21 1 11.3723 7.1911 7.7235 22 6 11.1932 7.5695 9.8250 23 7 10.4589 7.3995 10.9042 24 14 12.8054 8.5073 9.9304 25 1 13.4364 8.5593 8.5872 26 1 12.5440 9.8889 10.4078 27 1 13.7168 7.8196 10.8798 28 6 6.5994 3.7945 4.7017 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0445 0.5749 1.7356 35 1 3.2471 3.1276 3.8931 36 1 3.4065 1.3571 3.8045 37 1 4.6436 2.3206 4.6463 38 1 5.5947 4.0542 1.5572 39 1 8.2938 4.4357 1.8748 40 1 7.1893 5.6445 2.6122 41 1 9.1042 5.7917 4.0703 42 1 9.4306 4.0360 3.9570 43 1 10.1159 5.1583 6.5077 44 1 9.2553 6.6770 6.1594 45 1 10.7548 7.7615 11.7541 46 1 5.6870 4.3575 4.8982 47 1 6.5600 2.8340 5.2155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566759907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:19 Heat of formation + Delta-G solvation = -71.294922 kcal Electronic energy + Delta-G solvation = -26468.494455 eV Core-core repulsion = 22583.934482 eV Total energy + Delta-G solvation = -3884.559973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32282 -40.81041 -38.85320 -36.94288 -36.24420 -34.58474 -33.94531 -32.72012 -31.08611 -30.31016 -28.58515 -27.63126 -27.33797 -24.63822 -23.85283 -21.78720 -21.54986 -20.75760 -20.55701 -19.62280 -18.39554 -17.94081 -17.70834 -17.41054 -16.88471 -16.83500 -16.56140 -16.08217 -15.95182 -15.67891 -15.60418 -14.98007 -14.63301 -14.52123 -14.28865 -14.16797 -14.09648 -13.76031 -13.48264 -13.34723 -13.17170 -13.12897 -13.02789 -12.90883 -12.81232 -12.59924 -12.50840 -12.08037 -12.04112 -11.79561 -11.69584 -11.15601 -11.05054 -10.96256 -10.50701 -10.27631 -10.08604 -9.69781 -9.58144 -8.67878 -8.34499 -6.13253 1.15156 1.24194 1.42055 1.45237 1.52951 1.56871 1.57526 2.05394 2.26273 2.27698 2.99785 3.06467 3.22724 3.45523 3.59736 3.68853 3.85645 3.90922 4.05808 4.10974 4.16231 4.19076 4.23721 4.32750 4.41764 4.44721 4.55063 4.64693 4.67453 4.73219 4.80440 4.85583 4.91360 4.94636 4.99321 5.14461 5.27687 5.31891 5.38133 5.42202 5.63933 5.76412 5.91588 6.20268 6.27611 6.39747 6.50436 7.06692 7.11869 7.15260 8.75143 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.001654 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.272148 B =16929.482060 C =17475.471076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.513 3.487 6 O -0.574 6.574 7 C 0.071 3.929 8 H 0.101 0.899 9 C -0.141 4.141 10 N -0.676 5.676 11 C 0.088 3.912 12 H 0.090 0.910 13 C -0.123 4.123 14 C 0.092 3.908 15 N -0.617 5.617 16 C 0.544 3.456 17 O -0.568 6.568 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.273 1.273 28 C 0.115 3.885 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.417 0.583 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.361 0.639 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -17.691 -27.364 34.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C 0.022 3.978 4 N -0.365 5.365 5 C 0.300 3.700 6 O -0.453 6.453 7 C -0.042 4.042 8 H 0.118 0.882 9 C -0.199 4.199 10 N -0.313 5.313 11 C -0.022 4.022 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.030 4.030 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.447 6.447 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.184 0.816 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.149 -17.108 -25.870 34.090 hybrid contribution 1.864 0.240 -0.714 2.010 sum -12.286 -16.868 -26.584 33.796 Atomic orbital electron populations 1.24179 0.95859 1.03146 0.96845 1.22956 0.96272 0.97497 1.03151 1.20416 0.91573 0.96485 0.89307 1.45878 1.40006 1.19754 1.30864 1.20933 0.81393 0.81995 0.85710 1.90699 1.69340 1.36596 1.48641 1.21616 0.95545 0.93331 0.93674 0.88189 1.21873 1.00247 1.02623 0.95153 1.60206 1.19238 1.26962 1.24855 1.22549 0.88696 0.99708 0.91270 0.89272 1.22963 0.96491 0.99013 0.97662 1.22639 0.93481 1.03274 0.83600 1.48413 1.24293 1.55176 1.07301 1.19806 0.86787 0.78899 0.81261 1.90681 1.48456 1.58026 1.47557 1.23297 0.98703 1.02937 1.02039 1.85602 1.31165 1.71620 1.04121 1.23227 1.07079 1.40515 0.98466 0.89862 1.26138 1.02138 0.96744 0.94073 1.70197 1.39649 1.44631 1.00341 0.84889 0.76513 0.77444 0.78989 1.17934 1.19981 1.19840 1.22119 0.88195 0.95283 0.95261 0.86316 0.88491 0.85017 0.92374 0.91298 0.74596 0.93270 0.89442 0.91679 0.81579 0.86379 0.90234 0.89758 0.88922 0.87320 0.87655 0.91979 0.92486 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 14.32 67.78 0.97 0.09 16 2 C -0.18 -1.05 9.63 25.65 0.25 -0.80 16 3 C 0.15 1.52 6.11 85.63 0.52 2.04 16 4 N -0.71 -7.04 5.44 -466.78 -2.54 -9.58 16 5 C 0.51 8.13 7.18 87.66 0.63 8.76 16 6 O -0.57 -13.96 15.65 -3.04 -0.05 -14.00 16 7 C 0.07 0.91 3.03 44.17 0.13 1.05 16 8 H 0.10 0.77 7.49 -2.39 -0.02 0.75 16 9 C -0.14 -1.89 9.11 71.99 0.66 -1.24 16 10 N -0.68 -11.22 6.01 -467.22 -2.81 -14.03 16 11 C 0.09 1.34 3.23 46.11 0.15 1.49 16 12 H 0.09 0.96 7.54 -2.39 -0.02 0.94 16 13 C -0.12 -1.68 6.52 31.99 0.21 -1.48 16 14 C 0.09 1.72 6.69 86.86 0.58 2.30 16 15 N -0.62 -17.67 3.33 -811.77 -2.70 -20.37 16 16 C 0.54 21.80 7.87 87.66 0.69 22.49 16 17 O -0.57 -28.17 16.19 -3.03 -0.05 -28.21 16 18 C -0.12 -4.93 5.16 71.24 0.37 -4.56 16 19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 20 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.53 13.22 21.65 0.29 -56.24 16 24 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.11 2.78 4.97 86.73 0.43 3.21 16 29 H 0.12 0.32 8.06 -2.91 -0.02 0.29 16 30 H 0.10 0.60 7.84 -2.91 -0.02 0.58 16 31 H 0.13 0.36 8.06 -2.91 -0.02 0.33 16 32 H 0.06 0.79 7.79 -2.39 -0.02 0.77 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.42 1.73 7.88 -92.71 -0.73 1.00 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.66 7.56 -2.39 -0.02 0.64 16 37 H 0.06 1.03 5.91 -2.39 -0.01 1.02 16 38 H 0.36 6.22 7.21 -89.70 -0.65 5.58 16 39 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.57 7.48 -2.39 -0.02 1.55 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.11 4.00 7.85 -2.39 -0.02 3.98 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 46 H 0.06 1.66 7.99 -2.39 -0.02 1.65 16 47 H 0.06 1.52 7.48 -2.39 -0.02 1.50 16 Total: -1.00 -84.57 401.22 -0.69 -85.26 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.40 Total: 17.39 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.70 Total: 3.75 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -7.76 Total: -100.22 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.10 Total: -42.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -84.57 -0.69 -85.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566759907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.967 kcal (2) G-P(sol) polarization free energy of solvation -84.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds