Wall clock time and date at job start Wed Apr 1 2020 00:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46973 * 2 1 4 4 C 1.46758 * 124.34809 * 90.00094 * 3 2 1 5 5 C 1.54483 * 105.47442 * 162.96172 * 4 3 2 6 6 C 1.54633 * 101.76308 * 25.41342 * 5 4 3 7 7 H 1.09001 * 110.48301 * 94.01702 * 6 5 4 8 8 N 1.46895 * 110.48474 * 216.52642 * 6 5 4 9 9 C 1.46907 * 110.99529 * 205.00128 * 8 6 5 10 10 H 1.08991 * 112.85304 * 336.19937 * 9 8 6 11 11 C 1.54053 * 113.61745 * 107.50765 * 9 8 6 12 12 C 1.53781 * 86.98540 * 139.97583 * 11 9 8 13 13 H 1.09002 * 113.61408 * 219.97782 * 12 11 9 14 14 N 1.46506 * 113.61361 * 89.16177 * 12 11 9 15 15 C 1.34775 * 119.99893 * 105.86287 * 14 12 11 16 16 O 1.21270 * 120.00392 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99598 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.46866 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99767 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99734 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99492 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00563 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99475 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47286 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46992 * 120.00121 * 23 21 19 26 26 H 1.48500 * 109.46916 * 240.00030 * 23 21 19 27 27 C 1.53773 * 87.17302 * 334.56849 * 12 11 9 28 28 C 1.34416 * 124.34933 * 269.97442 * 3 2 1 29 29 O 1.21281 * 124.94326 * 0.43378 * 28 3 2 30 30 H 1.08998 * 109.47256 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47246 * 299.99535 * 1 2 3 33 33 H 1.08998 * 109.47004 * 240.00009 * 2 1 3 34 34 H 1.08998 * 109.47256 * 119.99980 * 2 1 3 35 35 H 1.09002 * 110.25125 * 43.96493 * 4 3 2 36 36 H 1.09007 * 110.32284 * 281.99936 * 4 3 2 37 37 H 1.09003 * 110.96989 * 267.29900 * 5 4 3 38 38 H 1.08997 * 110.96994 * 143.53536 * 5 4 3 39 39 H 1.00898 * 111.00120 * 328.94948 * 8 6 5 40 40 H 1.09001 * 113.61657 * 25.47375 * 11 9 8 41 41 H 1.08998 * 113.69472 * 254.48941 * 11 9 8 42 42 H 0.97005 * 119.99527 * 285.85972 * 14 12 11 43 43 H 1.09000 * 109.46900 * 299.99903 * 17 15 14 44 44 H 1.09001 * 109.46899 * 59.99861 * 17 15 14 45 45 H 0.97000 * 120.00312 * 179.97438 * 22 21 19 46 46 H 1.09007 * 113.61678 * 140.01927 * 27 12 11 47 47 H 1.09000 * 113.61916 * 270.92600 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1748 3.3438 0.7488 6 6 2.7702 3.4751 -0.7379 7 1 1.9771 4.2139 -0.8535 8 7 3.9338 3.8393 -1.5571 9 6 3.5175 4.5289 -2.7856 10 1 2.4942 4.2929 -3.0775 11 6 3.8275 6.0379 -2.7817 12 6 4.2283 5.8769 -4.2576 13 1 5.1107 6.4531 -4.5358 14 7 3.1137 6.0568 -5.1913 15 6 3.0241 7.1841 -5.9245 16 8 3.8658 8.0498 -5.8110 17 6 1.8773 7.3693 -6.8846 18 16 2.0373 8.9702 -7.7138 19 6 0.6099 8.9241 -8.7459 20 1 -0.0452 8.0658 -8.7234 21 6 0.3271 9.9914 -9.5871 22 7 1.1254 11.0376 -9.6141 23 14 -1.1865 9.9428 -10.6808 24 1 -1.9134 8.6662 -10.4637 25 1 -2.0771 11.0824 -10.3442 26 1 -0.7725 10.0415 -12.1035 27 6 4.5306 4.4039 -3.9358 28 6 2.2715 2.0961 -1.1098 29 8 2.1220 1.6942 -2.2442 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8320 1.5530 1.9385 36 1 1.3643 2.5312 1.6442 37 1 4.2335 3.1027 0.8451 38 1 2.9312 4.2514 1.3010 39 1 4.5854 4.4013 -1.0302 40 1 4.6582 6.3113 -2.1311 41 1 2.9485 6.6653 -2.6339 42 1 2.4403 5.3644 -5.2818 43 1 1.8934 6.5723 -7.6279 44 1 0.9357 7.3361 -6.3365 45 1 0.9279 11.7833 -10.2023 46 1 4.2189 3.7128 -4.7190 47 1 5.5532 4.2313 -3.6000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566783158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:12 Heat of formation + Delta-G solvation = -43.968375 kcal Electronic energy + Delta-G solvation = -26710.408456 eV Core-core repulsion = 22827.033451 eV Total energy + Delta-G solvation = -3883.375005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97523 -39.96428 -38.14213 -36.74458 -35.40279 -33.30819 -32.41163 -31.92233 -29.43801 -28.86112 -26.90756 -25.81925 -25.47484 -24.18189 -23.25298 -22.23557 -20.73988 -19.65471 -19.35887 -17.82736 -17.35091 -17.02607 -16.51809 -16.13117 -15.84698 -15.51279 -14.96734 -14.80183 -14.77878 -14.63587 -14.22731 -14.03073 -13.90822 -13.49206 -13.38387 -13.15660 -12.94967 -12.76549 -12.62494 -12.60532 -12.48141 -12.34871 -11.95303 -11.74272 -11.62308 -11.45689 -11.05727 -10.99999 -10.89539 -10.74080 -10.42563 -10.14508 -9.78295 -9.37712 -9.14563 -9.06061 -8.89695 -8.66914 -8.21165 -6.47862 -6.20086 -3.90283 2.28258 2.55831 3.04930 3.09943 3.22995 3.29644 3.34757 3.68116 3.73639 3.85227 3.99989 4.22108 4.32742 4.43132 4.48795 4.53943 4.63688 4.73460 4.79767 4.88949 4.90252 4.94428 4.99654 5.15152 5.17716 5.19718 5.23818 5.33453 5.42161 5.52529 5.54213 5.64372 5.71297 5.72081 5.84379 5.90123 5.93328 6.05494 6.14536 6.17643 6.56014 6.71611 6.78765 6.96307 7.61922 7.75703 7.90953 8.37454 8.64862 9.25460 10.87392 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.001892 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.159673 B =14791.818027 C =15903.137553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.624 5.624 4 C 0.106 3.894 5 C -0.137 4.137 6 C 0.053 3.947 7 H 0.085 0.915 8 N -0.658 5.658 9 C 0.071 3.929 10 H 0.100 0.900 11 C -0.181 4.181 12 C 0.126 3.874 13 H 0.104 0.896 14 N -0.721 5.721 15 C 0.535 3.465 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.130 4.130 28 C 0.528 3.472 29 O -0.515 6.515 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.350 0.650 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.076 0.924 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -21.537 26.678 34.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.360 5.360 4 C -0.017 4.017 5 C -0.175 4.175 6 C -0.061 4.061 7 H 0.103 0.897 8 N -0.290 5.290 9 C -0.039 4.039 10 H 0.118 0.882 11 C -0.222 4.222 12 C 0.019 3.981 13 H 0.122 0.878 14 N -0.375 5.375 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.169 4.169 28 C 0.314 3.686 29 O -0.388 6.388 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.171 0.829 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.233 0.767 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.575 -20.826 25.870 33.524 hybrid contribution -2.630 -0.523 -0.357 2.705 sum 1.945 -21.349 25.513 33.324 Atomic orbital electron populations 1.22170 0.95780 1.02447 1.02483 1.21332 0.94343 0.81052 1.03138 1.48271 1.66725 1.13793 1.07215 1.22012 0.99344 0.92715 0.87668 1.22862 1.01456 0.99015 0.94159 1.22210 0.95061 0.95622 0.93162 0.89704 1.60203 1.13323 1.48656 1.06828 1.23250 0.99387 0.91080 0.90218 0.88227 1.24235 1.02376 0.97273 0.98301 1.21586 0.91039 0.97148 0.88340 0.87846 1.45740 1.28021 1.20994 1.42726 1.20320 0.86611 0.80975 0.79990 1.90690 1.41093 1.41345 1.65965 1.23540 0.98670 1.07646 1.00587 1.85380 1.35775 1.13398 1.48833 1.22917 1.11206 1.07117 1.27012 0.90867 1.24996 0.97456 0.94556 0.96638 1.70027 1.36545 1.06523 1.37216 0.86114 0.81426 0.78210 0.79734 1.19615 1.20589 1.20557 1.23393 1.00429 0.95501 0.97604 1.20741 0.76305 0.87201 0.84345 1.90711 1.52206 1.74878 1.21052 0.92156 0.91360 0.92483 0.89975 0.90441 0.90221 0.91081 0.88905 0.88945 0.82855 0.89144 0.90933 0.76702 0.89134 0.89248 0.92256 0.90574 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.12 0.75 6.65 -4.04 -0.03 0.72 16 3 N -0.62 -4.47 2.93 -172.42 -0.51 -4.98 16 4 C 0.11 0.40 7.35 -3.12 -0.02 0.38 16 5 C -0.14 -0.50 6.60 -25.09 -0.17 -0.67 16 6 C 0.05 0.38 3.11 -67.72 -0.21 0.17 16 7 H 0.09 0.62 7.83 -51.93 -0.41 0.21 16 8 N -0.66 -5.18 6.44 -98.75 -0.64 -5.82 16 9 C 0.07 0.66 3.85 -66.75 -0.26 0.40 16 10 H 0.10 1.08 7.84 -51.93 -0.41 0.68 16 11 C -0.18 -1.78 7.51 -25.78 -0.19 -1.97 16 12 C 0.13 1.53 4.29 -67.12 -0.29 1.24 16 13 H 0.10 1.44 7.50 -51.93 -0.39 1.05 16 14 N -0.72 -10.15 5.26 -53.02 -0.28 -10.43 16 15 C 0.53 10.23 7.85 -10.98 -0.09 10.15 16 16 O -0.52 -11.91 15.48 5.57 0.09 -11.82 16 17 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 20 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 C -0.13 -1.31 7.62 -25.92 -0.20 -1.51 16 28 C 0.53 5.39 7.65 -10.86 -0.08 5.31 16 29 O -0.51 -7.47 17.53 5.56 0.10 -7.37 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.63 7.93 -51.93 -0.41 0.21 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 37 H 0.09 0.31 8.04 -51.93 -0.42 -0.10 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.35 2.05 7.84 -39.29 -0.31 1.75 16 40 H 0.09 0.74 7.83 -51.93 -0.41 0.33 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 4.71 8.70 -40.82 -0.36 4.36 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -37.53 403.52 -10.11 -47.63 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.72 Total: 2.07 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.73 Total: -2.46 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.69 Total: -46.91 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.53 -10.11 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566783158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.666 kcal (2) G-P(sol) polarization free energy of solvation -37.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds