Wall clock time and date at job start Wed Apr 1 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46973 * 2 1 4 4 C 1.46758 * 124.34809 * 90.00094 * 3 2 1 5 5 C 1.54483 * 105.47442 * 162.96172 * 4 3 2 6 6 C 1.54633 * 101.76308 * 25.41342 * 5 4 3 7 7 H 1.09001 * 110.48301 * 94.01702 * 6 5 4 8 8 N 1.46895 * 110.48474 * 216.52642 * 6 5 4 9 9 C 1.46907 * 110.99529 * 205.00128 * 8 6 5 10 10 H 1.08991 * 112.85304 * 336.19937 * 9 8 6 11 11 C 1.54053 * 113.61745 * 107.50765 * 9 8 6 12 12 C 1.53781 * 86.98540 * 139.97583 * 11 9 8 13 13 H 1.09002 * 113.61408 * 219.97782 * 12 11 9 14 14 N 1.46506 * 113.61361 * 89.16177 * 12 11 9 15 15 C 1.34775 * 119.99893 * 105.86287 * 14 12 11 16 16 O 1.21270 * 120.00392 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99598 * 180.02562 * 15 14 12 18 18 S 1.80998 * 109.46866 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99767 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99734 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99492 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00563 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99475 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47286 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46992 * 120.00121 * 23 21 19 26 26 H 1.48500 * 109.46916 * 240.00030 * 23 21 19 27 27 C 1.53773 * 87.17302 * 334.56849 * 12 11 9 28 28 C 1.34416 * 124.34933 * 269.97442 * 3 2 1 29 29 O 1.21281 * 124.94326 * 0.43378 * 28 3 2 30 30 H 1.08998 * 109.47256 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.47351 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47246 * 299.99535 * 1 2 3 33 33 H 1.08998 * 109.47004 * 240.00009 * 2 1 3 34 34 H 1.08998 * 109.47256 * 119.99980 * 2 1 3 35 35 H 1.09002 * 110.25125 * 43.96493 * 4 3 2 36 36 H 1.09007 * 110.32284 * 281.99936 * 4 3 2 37 37 H 1.09003 * 110.96989 * 267.29900 * 5 4 3 38 38 H 1.08997 * 110.96994 * 143.53536 * 5 4 3 39 39 H 1.00898 * 111.00120 * 328.94948 * 8 6 5 40 40 H 1.09001 * 113.61657 * 25.47375 * 11 9 8 41 41 H 1.08998 * 113.69472 * 254.48941 * 11 9 8 42 42 H 0.97005 * 119.99527 * 285.85972 * 14 12 11 43 43 H 1.09000 * 109.46900 * 299.99903 * 17 15 14 44 44 H 1.09001 * 109.46899 * 59.99861 * 17 15 14 45 45 H 0.97000 * 120.00312 * 179.97438 * 22 21 19 46 46 H 1.09007 * 113.61678 * 140.01927 * 27 12 11 47 47 H 1.09000 * 113.61916 * 270.92600 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1748 3.3438 0.7488 6 6 2.7702 3.4751 -0.7379 7 1 1.9771 4.2139 -0.8535 8 7 3.9338 3.8393 -1.5571 9 6 3.5175 4.5289 -2.7856 10 1 2.4942 4.2929 -3.0775 11 6 3.8275 6.0379 -2.7817 12 6 4.2283 5.8769 -4.2576 13 1 5.1107 6.4531 -4.5358 14 7 3.1137 6.0568 -5.1913 15 6 3.0241 7.1841 -5.9245 16 8 3.8658 8.0498 -5.8110 17 6 1.8773 7.3693 -6.8846 18 16 2.0373 8.9702 -7.7138 19 6 0.6099 8.9241 -8.7459 20 1 -0.0452 8.0658 -8.7234 21 6 0.3271 9.9914 -9.5871 22 7 1.1254 11.0376 -9.6141 23 14 -1.1865 9.9428 -10.6808 24 1 -1.9134 8.6662 -10.4637 25 1 -2.0771 11.0824 -10.3442 26 1 -0.7725 10.0415 -12.1035 27 6 4.5306 4.4039 -3.9358 28 6 2.2715 2.0961 -1.1098 29 8 2.1220 1.6942 -2.2442 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8320 1.5530 1.9385 36 1 1.3643 2.5312 1.6442 37 1 4.2335 3.1027 0.8451 38 1 2.9312 4.2514 1.3010 39 1 4.5854 4.4013 -1.0302 40 1 4.6582 6.3113 -2.1311 41 1 2.9485 6.6653 -2.6339 42 1 2.4403 5.3644 -5.2818 43 1 1.8934 6.5723 -7.6279 44 1 0.9357 7.3361 -6.3365 45 1 0.9279 11.7833 -10.2023 46 1 4.2189 3.7128 -4.7190 47 1 5.5532 4.2313 -3.6000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566783158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:11 Heat of formation + Delta-G solvation = -72.500508 kcal Electronic energy + Delta-G solvation = -26711.645702 eV Core-core repulsion = 22827.033451 eV Total energy + Delta-G solvation = -3884.612251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64534 -41.05759 -39.39040 -37.46112 -36.11165 -34.60697 -34.34227 -32.73971 -30.62607 -29.70359 -27.72518 -27.46967 -26.65737 -24.82192 -23.98429 -22.74146 -22.09058 -20.46463 -20.16553 -19.83886 -18.06594 -17.80623 -17.57679 -17.13777 -16.89619 -16.74748 -16.54988 -16.26645 -15.97402 -15.40574 -15.22328 -14.79948 -14.74863 -14.54910 -14.43517 -14.28484 -13.98763 -13.79046 -13.52587 -13.36267 -13.20054 -13.17772 -13.14621 -12.92479 -12.78471 -12.62876 -12.35889 -12.19783 -11.94505 -11.74023 -11.73191 -11.28109 -11.17284 -10.98732 -10.89049 -10.30138 -10.10140 -9.69458 -9.37073 -8.68368 -8.36392 -6.14479 1.24873 1.40094 1.44964 1.56374 1.56925 1.58326 2.05791 2.22728 2.26710 2.97577 3.13376 3.29662 3.35936 3.49562 3.58445 3.69402 3.86227 3.96098 4.04500 4.07902 4.14456 4.18522 4.27048 4.29004 4.46273 4.47671 4.48758 4.62597 4.70999 4.77390 4.81791 4.86889 4.89990 4.93662 4.98785 5.04989 5.07043 5.15979 5.24628 5.40617 5.54911 5.66256 5.94802 6.14946 6.18584 6.44078 6.47707 7.04922 7.20567 7.23143 8.73107 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.001892 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.159673 B =14791.818027 C =15903.137553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.622 5.622 4 C 0.101 3.899 5 C -0.124 4.124 6 C 0.052 3.948 7 H 0.084 0.916 8 N -0.661 5.661 9 C 0.082 3.918 10 H 0.083 0.917 11 C -0.166 4.166 12 C 0.110 3.890 13 H 0.085 0.915 14 N -0.699 5.699 15 C 0.538 3.462 16 O -0.562 6.562 17 C -0.131 4.131 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 1.000 3.000 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.120 4.120 28 C 0.511 3.489 29 O -0.573 6.573 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.365 0.635 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.412 0.588 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.272 0.728 46 H 0.067 0.933 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -23.169 29.177 37.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.356 5.356 4 C -0.021 4.021 5 C -0.162 4.162 6 C -0.061 4.061 7 H 0.102 0.898 8 N -0.294 5.294 9 C -0.028 4.028 10 H 0.102 0.898 11 C -0.206 4.206 12 C 0.004 3.996 13 H 0.104 0.896 14 N -0.351 5.351 15 C 0.324 3.676 16 O -0.440 6.440 17 C -0.283 4.283 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.159 4.159 28 C 0.299 3.701 29 O -0.452 6.452 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.188 0.812 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.249 0.751 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.805 -22.512 28.459 36.485 hybrid contribution -2.345 -0.156 -0.999 2.554 sum 1.460 -22.668 27.460 35.637 Atomic orbital electron populations 1.22113 0.95481 1.03096 1.01555 1.21458 0.94596 0.80855 1.03523 1.48473 1.65260 1.14106 1.07748 1.22321 1.00502 0.92737 0.86587 1.22905 1.01869 1.00103 0.91331 1.22247 0.94795 0.93767 0.95320 0.89792 1.60088 1.13986 1.48585 1.06753 1.22995 0.98262 0.90690 0.90872 0.89847 1.24182 1.02637 0.97420 0.96400 1.21819 0.89761 0.98743 0.89292 0.89638 1.45512 1.28581 1.19465 1.41585 1.20028 0.85640 0.81760 0.80158 1.90676 1.42526 1.43234 1.67565 1.23386 1.00385 1.03530 1.00963 1.85523 1.36766 1.19253 1.50391 1.23236 1.11265 1.07685 1.27308 0.90073 1.26134 1.01012 0.93903 0.98133 1.70182 1.38764 1.07432 1.38286 0.84896 0.76841 0.78832 0.77312 1.18225 1.19761 1.19833 1.23356 1.01534 0.93317 0.97645 1.21387 0.75971 0.88593 0.84189 1.90666 1.54875 1.76288 1.23341 0.95103 0.90019 0.91201 0.92288 0.87302 0.87854 0.89575 0.88137 0.86446 0.81245 0.86844 0.92022 0.75130 0.87433 0.87360 0.91931 0.91391 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.12 1.29 6.65 86.38 0.57 1.87 16 3 N -0.62 -7.95 2.93 -817.99 -2.40 -10.35 16 4 C 0.10 0.42 7.35 86.83 0.64 1.05 16 5 C -0.12 -0.47 6.60 31.65 0.21 -0.26 16 6 C 0.05 0.66 3.11 44.91 0.14 0.80 16 7 H 0.08 1.09 7.83 -2.39 -0.02 1.07 16 8 N -0.66 -9.17 6.44 -466.33 -3.00 -12.17 16 9 C 0.08 1.45 3.85 45.53 0.18 1.63 16 10 H 0.08 1.79 7.84 -2.39 -0.02 1.77 16 11 C -0.17 -3.02 7.51 31.21 0.23 -2.79 16 12 C 0.11 2.62 4.29 45.51 0.20 2.81 16 13 H 0.09 2.40 7.50 -2.39 -0.02 2.38 16 14 N -0.70 -19.43 5.26 -440.04 -2.32 -21.74 16 15 C 0.54 20.78 7.85 87.66 0.69 21.47 16 16 O -0.56 -26.68 15.48 -3.00 -0.05 -26.73 16 17 C -0.13 -5.45 6.16 71.24 0.44 -5.01 16 18 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 19 C -0.55 -31.92 9.50 67.95 0.65 -31.28 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 23 Si 1.00 44.42 29.55 68.60 2.03 46.44 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C -0.12 -2.28 7.62 31.12 0.24 -2.05 16 28 C 0.51 10.22 7.65 87.90 0.67 10.90 16 29 O -0.57 -17.29 17.53 -3.03 -0.05 -17.35 16 30 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.93 7.93 -2.39 -0.02 0.91 16 34 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.10 0.28 8.04 -2.39 -0.02 0.26 16 38 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.36 3.20 7.84 -89.70 -0.70 2.49 16 40 H 0.11 1.56 7.83 -2.39 -0.02 1.55 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 9.41 8.70 -92.70 -0.81 8.60 16 43 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 44 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 46 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -86.24 403.52 -1.14 -87.38 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.53 Total: 20.88 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.05 Total: -0.62 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -7.43 Total: -100.53 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.10 Total: -44.07 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -86.24 -1.14 -87.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566783158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.882 kcal (2) G-P(sol) polarization free energy of solvation -86.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds