Wall clock time and date at job start Wed Apr 1 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.46765 * 124.34844 * 90.00002 * 3 2 1 5 5 C 1.54480 * 105.47306 * 163.00486 * 4 3 2 6 6 C 1.54637 * 101.79655 * 25.39729 * 5 4 3 7 7 H 1.09001 * 110.48391 * 93.89928 * 6 5 4 8 8 N 1.46895 * 110.48453 * 216.54243 * 6 5 4 9 9 C 1.46899 * 110.99750 * 205.00379 * 8 6 5 10 10 H 1.08995 * 112.85222 * 23.80527 * 9 8 6 11 11 C 1.53784 * 113.61310 * 155.00061 * 9 8 6 12 12 C 1.53788 * 87.08142 * 139.97753 * 11 9 8 13 13 H 1.09003 * 113.61150 * 89.11222 * 12 11 9 14 14 N 1.46498 * 113.61326 * 219.93103 * 12 11 9 15 15 C 1.34776 * 119.99641 * 204.99700 * 14 12 11 16 16 O 1.21273 * 120.00370 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99701 * 180.02562 * 15 14 12 18 18 S 1.81002 * 109.47028 * 180.02562 * 17 15 14 19 19 C 1.76195 * 99.99745 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00451 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99713 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99856 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47216 * 60.00525 * 23 21 19 25 25 H 1.48501 * 109.47288 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47390 * 299.99969 * 23 21 19 27 27 C 1.53782 * 113.61051 * 252.49417 * 9 8 6 28 28 C 1.34412 * 124.35012 * 270.02663 * 3 2 1 29 29 O 1.21283 * 124.94095 * 0.38910 * 28 3 2 30 30 H 1.09003 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47179 * 299.99875 * 1 2 3 32 32 H 1.08997 * 109.47533 * 59.99719 * 1 2 3 33 33 H 1.08999 * 109.47211 * 240.00389 * 2 1 3 34 34 H 1.09004 * 109.47148 * 119.99773 * 2 1 3 35 35 H 1.09000 * 110.24541 * 44.00914 * 4 3 2 36 36 H 1.08995 * 110.32113 * 282.04470 * 4 3 2 37 37 H 1.09002 * 110.96988 * 143.53587 * 5 4 3 38 38 H 1.09003 * 110.97155 * 267.26099 * 5 4 3 39 39 H 1.00903 * 111.00007 * 328.95385 * 8 6 5 40 40 H 1.08995 * 113.61523 * 254.52541 * 11 9 8 41 41 H 1.08993 * 113.61745 * 25.34539 * 11 9 8 42 42 H 0.96997 * 119.99945 * 25.00870 * 14 12 11 43 43 H 1.08999 * 109.47105 * 300.00339 * 17 15 14 44 44 H 1.09000 * 109.47152 * 60.00068 * 17 15 14 45 45 H 0.96998 * 119.99937 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.61809 * 334.56481 * 27 9 8 47 47 H 1.08999 * 113.61326 * 105.47402 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7487 6 6 2.7695 3.4761 -0.7381 7 1 1.9746 4.2129 -0.8533 8 7 3.9331 3.8409 -1.5570 9 6 3.5169 4.5307 -2.7853 10 1 2.5408 5.0070 -2.6933 11 6 4.5994 5.4528 -3.3710 12 6 4.1663 4.9496 -4.7582 13 1 3.3673 5.5399 -5.2068 14 7 5.2858 4.7180 -5.6743 15 6 5.0887 4.7727 -7.0065 16 8 3.9848 5.0141 -7.4468 17 6 6.2402 4.5340 -7.9489 18 16 5.6604 4.6752 -9.6578 19 6 7.1654 4.3604 -10.5183 20 1 8.0715 4.1600 -9.9661 21 6 7.1862 4.3700 -11.9062 22 7 6.0819 4.6148 -12.5794 23 14 8.7819 4.0370 -12.8186 24 1 9.2834 2.6855 -12.4617 25 1 8.5385 4.1034 -14.2820 26 1 9.7921 5.0564 -12.4376 27 6 3.6702 3.6755 -4.0542 28 6 2.2706 2.0965 -1.1097 29 8 2.1208 1.6946 -2.2442 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8327 1.5533 1.9381 36 1 1.3644 2.5305 1.6446 37 1 2.9300 4.2519 1.3011 38 1 4.2328 3.1042 0.8451 39 1 4.5846 4.4028 -1.0297 40 1 4.4036 6.5129 -3.2104 41 1 5.6141 5.1636 -3.0974 42 1 6.1688 4.5252 -5.3221 43 1 7.0182 5.2754 -7.7671 44 1 6.6442 3.5353 -7.7833 45 1 6.0967 4.6218 -13.5492 46 1 4.4309 2.8996 -3.9686 47 1 2.7242 3.3009 -4.4451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566832936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:17 Heat of formation + Delta-G solvation = -43.454573 kcal Electronic energy + Delta-G solvation = -26637.290819 eV Core-core repulsion = 22753.938094 eV Total energy + Delta-G solvation = -3883.352725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91329 -39.76924 -38.10644 -36.68982 -35.39038 -33.35008 -32.37681 -31.97996 -29.41702 -28.87124 -26.92024 -25.73792 -25.44220 -24.08746 -23.07416 -22.12906 -20.30434 -19.79788 -19.57069 -17.73264 -17.26968 -16.97090 -16.58813 -16.19167 -15.99787 -15.16265 -15.09980 -14.75914 -14.65671 -14.53711 -14.36657 -14.03814 -13.86132 -13.80661 -13.23479 -13.03118 -12.73871 -12.62229 -12.51634 -12.49506 -12.33310 -12.32061 -11.90694 -11.68581 -11.47944 -11.30376 -11.00180 -10.99586 -10.86637 -10.69567 -10.63903 -10.10624 -9.76338 -9.26889 -9.09909 -9.01148 -8.86717 -8.63424 -8.17180 -6.43638 -6.16266 -3.86319 2.33302 2.59934 3.11908 3.18263 3.27324 3.31277 3.36003 3.66419 3.80923 3.93759 4.02146 4.25693 4.32616 4.42874 4.49215 4.55437 4.64870 4.74659 4.82565 4.89479 4.92870 4.98909 5.02294 5.17611 5.18537 5.22494 5.26883 5.30618 5.44571 5.46402 5.53031 5.66334 5.74488 5.79148 5.95579 5.99185 6.15409 6.18663 6.21911 6.27794 6.66605 6.77189 6.82864 6.93668 7.64384 7.84797 7.97965 8.40292 8.73304 9.28694 10.91109 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.001746 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.641624 B =16031.940044 C =16560.523246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.625 5.625 4 C 0.107 3.893 5 C -0.137 4.137 6 C 0.054 3.946 7 H 0.084 0.916 8 N -0.655 5.655 9 C 0.064 3.936 10 H 0.077 0.923 11 C -0.149 4.149 12 C 0.124 3.876 13 H 0.113 0.887 14 N -0.725 5.725 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.123 4.123 28 C 0.526 3.474 29 O -0.506 6.506 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.349 0.651 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.090 0.910 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -3.114 35.715 36.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.362 5.362 4 C -0.017 4.017 5 C -0.175 4.175 6 C -0.060 4.060 7 H 0.101 0.899 8 N -0.288 5.288 9 C -0.046 4.046 10 H 0.094 0.906 11 C -0.188 4.188 12 C 0.018 3.982 13 H 0.131 0.869 14 N -0.378 5.378 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.163 4.163 28 C 0.311 3.689 29 O -0.378 6.378 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.169 0.831 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.310 -3.589 33.852 35.041 hybrid contribution 2.410 0.201 0.640 2.502 sum -5.899 -3.388 34.492 35.157 Atomic orbital electron populations 1.22166 0.95839 1.02435 1.02385 1.21327 0.94291 0.81059 1.03170 1.48270 1.66973 1.13787 1.07154 1.21987 0.99217 0.92714 0.87770 1.22864 1.01510 0.98952 0.94187 1.22293 0.94714 0.95982 0.93015 0.89879 1.60336 1.13433 1.48280 1.06744 1.22927 0.97228 0.94858 0.89582 0.90554 1.23642 0.99655 0.99393 0.96078 1.22258 0.90653 0.97791 0.87545 0.86938 1.45919 1.12014 1.74142 1.05757 1.20322 0.90094 0.75549 0.82167 1.90688 1.25487 1.46503 1.76624 1.23539 0.99530 1.04670 1.02695 1.85392 1.15258 1.92896 0.89831 1.22838 0.95686 1.56012 0.93839 0.90998 1.24992 0.97386 0.94716 0.96516 1.70012 1.26710 1.45859 1.07741 0.86227 0.82083 0.78923 0.78273 1.19956 1.20837 1.19972 1.23435 1.02552 0.97019 0.93269 1.20724 0.76551 0.87172 0.84415 1.90745 1.51588 1.74649 1.20866 0.91371 0.92584 0.92151 0.89906 0.90501 0.90291 0.91210 0.89092 0.88921 0.83062 0.90844 0.88922 0.76804 0.89294 0.89240 0.92172 0.89194 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.12 0.81 6.65 -4.04 -0.03 0.78 16 3 N -0.63 -4.63 2.93 -172.39 -0.51 -5.14 16 4 C 0.11 0.40 7.35 -3.12 -0.02 0.38 16 5 C -0.14 -0.46 6.59 -25.09 -0.17 -0.62 16 6 C 0.05 0.37 3.26 -67.69 -0.22 0.15 16 7 H 0.08 0.54 7.47 -51.93 -0.39 0.16 16 8 N -0.65 -5.06 6.38 -98.87 -0.63 -5.69 16 9 C 0.06 0.59 4.07 -66.90 -0.27 0.32 16 10 H 0.08 0.70 7.47 -51.93 -0.39 0.31 16 11 C -0.15 -1.29 7.40 -25.91 -0.19 -1.48 16 12 C 0.12 1.59 4.24 -67.11 -0.28 1.30 16 13 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 14 N -0.73 -10.47 5.36 -53.01 -0.28 -10.75 16 15 C 0.53 10.52 7.85 -10.98 -0.09 10.44 16 16 O -0.52 -12.39 15.46 5.56 0.09 -12.31 16 17 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 19 C -0.54 -15.64 9.50 30.94 0.29 -15.35 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 23 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 27 C -0.12 -1.59 7.07 -25.92 -0.18 -1.77 16 28 C 0.53 5.51 7.65 -10.84 -0.08 5.42 16 29 O -0.51 -7.63 16.92 5.56 0.09 -7.54 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.09 0.30 8.04 -51.93 -0.42 -0.12 16 39 H 0.35 1.85 8.19 -39.29 -0.32 1.53 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.71 8.12 -51.93 -0.42 0.28 16 42 H 0.40 4.56 8.73 -40.82 -0.36 4.20 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -38.39 402.47 -10.12 -48.51 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.71 Total: 1.96 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.74 Total: -2.04 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.69 Total: -47.57 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.18 Total: -19.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.39 -10.12 -48.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.058 kcal (2) G-P(sol) polarization free energy of solvation -38.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds