Wall clock time and date at job start Wed Apr 1 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.46765 * 124.34844 * 90.00002 * 3 2 1 5 5 C 1.54480 * 105.47306 * 163.00486 * 4 3 2 6 6 C 1.54637 * 101.79655 * 25.39729 * 5 4 3 7 7 H 1.09001 * 110.48391 * 93.89928 * 6 5 4 8 8 N 1.46895 * 110.48453 * 216.54243 * 6 5 4 9 9 C 1.46899 * 110.99750 * 205.00379 * 8 6 5 10 10 H 1.08995 * 112.85222 * 23.80527 * 9 8 6 11 11 C 1.53784 * 113.61310 * 155.00061 * 9 8 6 12 12 C 1.53788 * 87.08142 * 139.97753 * 11 9 8 13 13 H 1.09003 * 113.61150 * 89.11222 * 12 11 9 14 14 N 1.46498 * 113.61326 * 219.93103 * 12 11 9 15 15 C 1.34776 * 119.99641 * 204.99700 * 14 12 11 16 16 O 1.21273 * 120.00370 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99701 * 180.02562 * 15 14 12 18 18 S 1.81002 * 109.47028 * 180.02562 * 17 15 14 19 19 C 1.76195 * 99.99745 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00451 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99713 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99856 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47216 * 60.00525 * 23 21 19 25 25 H 1.48501 * 109.47288 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47390 * 299.99969 * 23 21 19 27 27 C 1.53782 * 113.61051 * 252.49417 * 9 8 6 28 28 C 1.34412 * 124.35012 * 270.02663 * 3 2 1 29 29 O 1.21283 * 124.94095 * 0.38910 * 28 3 2 30 30 H 1.09003 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47179 * 299.99875 * 1 2 3 32 32 H 1.08997 * 109.47533 * 59.99719 * 1 2 3 33 33 H 1.08999 * 109.47211 * 240.00389 * 2 1 3 34 34 H 1.09004 * 109.47148 * 119.99773 * 2 1 3 35 35 H 1.09000 * 110.24541 * 44.00914 * 4 3 2 36 36 H 1.08995 * 110.32113 * 282.04470 * 4 3 2 37 37 H 1.09002 * 110.96988 * 143.53587 * 5 4 3 38 38 H 1.09003 * 110.97155 * 267.26099 * 5 4 3 39 39 H 1.00903 * 111.00007 * 328.95385 * 8 6 5 40 40 H 1.08995 * 113.61523 * 254.52541 * 11 9 8 41 41 H 1.08993 * 113.61745 * 25.34539 * 11 9 8 42 42 H 0.96997 * 119.99945 * 25.00870 * 14 12 11 43 43 H 1.08999 * 109.47105 * 300.00339 * 17 15 14 44 44 H 1.09000 * 109.47152 * 60.00068 * 17 15 14 45 45 H 0.96998 * 119.99937 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.61809 * 334.56481 * 27 9 8 47 47 H 1.08999 * 113.61326 * 105.47402 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7487 6 6 2.7695 3.4761 -0.7381 7 1 1.9746 4.2129 -0.8533 8 7 3.9331 3.8409 -1.5570 9 6 3.5169 4.5307 -2.7853 10 1 2.5408 5.0070 -2.6933 11 6 4.5994 5.4528 -3.3710 12 6 4.1663 4.9496 -4.7582 13 1 3.3673 5.5399 -5.2068 14 7 5.2858 4.7180 -5.6743 15 6 5.0887 4.7727 -7.0065 16 8 3.9848 5.0141 -7.4468 17 6 6.2402 4.5340 -7.9489 18 16 5.6604 4.6752 -9.6578 19 6 7.1654 4.3604 -10.5183 20 1 8.0715 4.1600 -9.9661 21 6 7.1862 4.3700 -11.9062 22 7 6.0819 4.6148 -12.5794 23 14 8.7819 4.0370 -12.8186 24 1 9.2834 2.6855 -12.4617 25 1 8.5385 4.1034 -14.2820 26 1 9.7921 5.0564 -12.4376 27 6 3.6702 3.6755 -4.0542 28 6 2.2706 2.0965 -1.1097 29 8 2.1208 1.6946 -2.2442 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8327 1.5533 1.9381 36 1 1.3644 2.5305 1.6446 37 1 2.9300 4.2519 1.3011 38 1 4.2328 3.1042 0.8451 39 1 4.5846 4.4028 -1.0297 40 1 4.4036 6.5129 -3.2104 41 1 5.6141 5.1636 -3.0974 42 1 6.1688 4.5252 -5.3221 43 1 7.0182 5.2754 -7.7671 44 1 6.6442 3.5353 -7.7833 45 1 6.0967 4.6218 -13.5492 46 1 4.4309 2.8996 -3.9686 47 1 2.7242 3.3009 -4.4451 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566832936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:16 Heat of formation + Delta-G solvation = -73.518388 kcal Electronic energy + Delta-G solvation = -26638.594484 eV Core-core repulsion = 22753.938094 eV Total energy + Delta-G solvation = -3884.656390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57434 -40.95159 -39.36511 -37.43981 -36.12665 -34.59661 -34.44328 -32.79098 -30.66937 -29.70313 -27.71684 -27.49765 -26.62221 -24.72871 -23.93543 -22.59990 -21.75000 -20.78727 -20.21286 -19.75353 -17.97683 -17.74500 -17.66776 -17.37673 -16.88242 -16.74012 -16.42960 -16.22561 -15.92132 -15.56349 -15.12249 -14.96103 -14.67280 -14.60995 -14.41321 -14.39789 -13.88504 -13.69382 -13.36282 -13.31987 -13.17573 -13.06923 -12.94564 -12.86135 -12.78536 -12.65824 -12.41284 -12.10897 -11.90846 -11.78933 -11.62668 -11.56739 -11.13127 -10.92687 -10.85593 -10.28646 -10.02444 -9.67566 -9.42564 -8.67775 -8.34550 -6.13355 1.26489 1.43980 1.46441 1.56441 1.59967 1.62109 2.07698 2.26702 2.31843 2.99144 3.20049 3.32494 3.36434 3.53306 3.56201 3.66469 3.93438 3.99886 4.02544 4.05909 4.14941 4.19816 4.28332 4.30536 4.43417 4.46818 4.49348 4.56299 4.70880 4.80767 4.81900 4.84030 4.92820 5.00079 5.02869 5.07925 5.13587 5.20017 5.23664 5.41042 5.58564 5.68123 5.97921 6.18272 6.19406 6.49367 6.54396 7.06020 7.26605 7.27833 8.74581 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.001746 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.641624 B =16031.940044 C =16560.523246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.624 5.624 4 C 0.100 3.900 5 C -0.122 4.122 6 C 0.053 3.947 7 H 0.089 0.911 8 N -0.660 5.660 9 C 0.079 3.921 10 H 0.078 0.922 11 C -0.119 4.119 12 C 0.110 3.890 13 H 0.090 0.910 14 N -0.699 5.699 15 C 0.532 3.468 16 O -0.569 6.569 17 C -0.129 4.129 18 S -0.155 6.155 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.260 1.260 27 C -0.127 4.127 28 C 0.506 3.494 29 O -0.571 6.571 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.368 0.632 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.417 0.583 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -2.529 39.724 39.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.358 5.358 4 C -0.022 4.022 5 C -0.160 4.160 6 C -0.060 4.060 7 H 0.107 0.893 8 N -0.295 5.295 9 C -0.032 4.032 10 H 0.096 0.904 11 C -0.157 4.157 12 C 0.004 3.996 13 H 0.108 0.892 14 N -0.352 5.352 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.167 4.167 28 C 0.293 3.707 29 O -0.449 6.449 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.191 0.809 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.254 0.746 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.724 -3.001 37.995 38.541 hybrid contribution 1.534 -0.071 -0.436 1.597 sum -4.189 -3.072 37.559 37.917 Atomic orbital electron populations 1.22102 0.95433 1.03024 1.01554 1.21427 0.94649 0.81093 1.03280 1.48488 1.65479 1.13996 1.07881 1.22330 1.00579 0.92805 0.86487 1.22906 1.01754 1.00113 0.91181 1.22342 0.94648 0.93780 0.95254 0.89317 1.60110 1.14279 1.48476 1.06673 1.22697 0.97867 0.93566 0.89064 0.90372 1.23501 1.00355 1.00416 0.91459 1.22454 0.90007 0.98133 0.88959 0.89209 1.45694 1.13530 1.71967 1.03985 1.20157 0.88862 0.75453 0.83709 1.90677 1.27102 1.49259 1.77761 1.23377 1.00305 1.06435 0.97873 1.85605 1.17704 1.93337 0.96101 1.23180 0.95675 1.56129 0.94533 0.89838 1.26175 1.01581 0.94032 0.97511 1.70188 1.29517 1.46989 1.08131 0.84973 0.76844 0.79386 0.76584 1.18730 1.20335 1.18457 1.23381 1.00252 0.96999 0.96096 1.21545 0.76116 0.88889 0.84170 1.90709 1.54475 1.76260 1.23437 0.90175 0.90923 0.95261 0.92782 0.87323 0.88087 0.89440 0.85944 0.88274 0.80853 0.88606 0.86770 0.74581 0.86866 0.87494 0.91986 0.90313 0.94814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.24 71.98 0.74 -1.18 16 2 C 0.12 1.49 6.65 86.38 0.57 2.07 16 3 N -0.62 -8.60 2.93 -817.91 -2.40 -11.00 16 4 C 0.10 0.40 7.35 86.83 0.64 1.04 16 5 C -0.12 -0.33 6.59 31.65 0.21 -0.12 16 6 C 0.05 0.65 3.26 44.93 0.15 0.79 16 7 H 0.09 0.99 7.47 -2.39 -0.02 0.98 16 8 N -0.66 -8.81 6.38 -466.71 -2.98 -11.79 16 9 C 0.08 1.37 4.07 45.44 0.18 1.56 16 10 H 0.08 1.36 7.47 -2.39 -0.02 1.35 16 11 C -0.12 -1.72 7.40 31.12 0.23 -1.49 16 12 C 0.11 2.82 4.24 45.52 0.19 3.01 16 13 H 0.09 2.77 7.46 -2.39 -0.02 2.75 16 14 N -0.70 -19.66 5.36 -440.03 -2.36 -22.02 16 15 C 0.53 21.34 7.85 87.66 0.69 22.03 16 16 O -0.57 -28.56 15.46 -3.01 -0.05 -28.61 16 17 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 18 S -0.15 -8.97 20.57 -56.49 -1.16 -10.13 16 19 C -0.55 -32.23 9.50 67.96 0.65 -31.59 16 20 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -57.52 13.22 21.65 0.29 -57.23 16 23 Si 1.00 44.64 29.55 68.60 2.03 46.66 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 C -0.13 -3.44 7.07 31.12 0.22 -3.22 16 28 C 0.51 10.74 7.65 87.92 0.67 11.42 16 29 O -0.57 -18.72 16.92 -3.04 -0.05 -18.77 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 1.00 7.93 -2.39 -0.02 0.98 16 34 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.10 0.02 8.14 -2.39 -0.02 0.01 16 36 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.10 0.20 8.04 -2.39 -0.02 0.18 16 39 H 0.37 2.46 8.19 -89.69 -0.73 1.73 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.24 8.12 -2.39 -0.02 1.22 16 42 H 0.42 8.58 8.73 -92.71 -0.81 7.77 16 43 H 0.11 4.20 8.14 -2.40 -0.02 4.19 16 44 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 45 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -91.75 402.47 -1.20 -92.95 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.56 Total: 19.47 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.04 Total: 0.48 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -7.45 Total: -102.04 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.10 Total: -47.38 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -91.75 -1.20 -92.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.427 kcal (2) G-P(sol) polarization free energy of solvation -91.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds