Wall clock time and date at job start Wed Apr 1 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 7 7 H 1.08994 * 110.49106 * 266.12244 * 6 5 4 8 8 N 1.46905 * 110.48642 * 143.47464 * 6 5 4 9 9 C 1.46900 * 110.99959 * 155.00081 * 8 6 5 10 10 H 1.08994 * 112.84683 * 334.67268 * 9 8 6 11 11 C 1.53783 * 113.61111 * 105.86412 * 9 8 6 12 12 C 1.53954 * 87.01690 * 139.95409 * 11 9 8 13 13 H 1.08993 * 113.54247 * 89.18777 * 12 11 9 14 14 N 1.46502 * 113.74112 * 220.05838 * 12 11 9 15 15 C 1.34781 * 119.99693 * 252.59258 * 14 12 11 16 16 O 1.21279 * 120.00145 * 0.02562 * 15 14 12 17 17 C 1.50702 * 119.99636 * 179.97438 * 15 14 12 18 18 S 1.81004 * 109.46669 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99589 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99681 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99636 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47482 * 60.00233 * 23 21 19 25 25 H 1.48511 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47173 * 299.99792 * 23 21 19 27 27 C 1.53771 * 113.61493 * 203.47186 * 9 8 6 28 28 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 29 29 O 1.21286 * 124.90539 * 359.55259 * 28 3 2 30 30 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 32 32 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 33 33 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 34 34 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 35 35 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 36 36 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 37 37 H 1.08995 * 110.97082 * 92.66028 * 5 4 3 38 38 H 1.08996 * 110.96783 * 216.38630 * 5 4 3 39 39 H 1.00894 * 110.99600 * 31.05056 * 8 6 5 40 40 H 1.09000 * 113.61319 * 254.53068 * 11 9 8 41 41 H 1.09002 * 113.61678 * 25.43483 * 11 9 8 42 42 H 0.97000 * 120.00171 * 72.59530 * 14 12 11 43 43 H 1.08995 * 109.47752 * 300.00232 * 17 15 14 44 44 H 1.09001 * 109.47044 * 60.00884 * 17 15 14 45 45 H 0.97003 * 119.99675 * 180.02562 * 22 21 19 46 46 H 1.09003 * 113.61515 * 334.56634 * 27 9 8 47 47 H 1.09001 * 113.61518 * 105.38471 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 6 2.7499 3.4854 -0.7357 7 1 3.8312 3.5599 -0.8505 8 7 2.0736 4.5009 -1.5539 9 6 2.8312 4.7778 -2.7816 10 1 3.8945 4.5603 -2.6809 11 6 2.1963 4.1755 -4.0462 12 6 2.5836 5.4808 -4.7648 13 1 3.5792 5.4551 -5.2077 14 7 1.5606 5.9690 -5.6929 15 6 1.7575 5.8754 -7.0230 16 8 2.7814 5.3865 -7.4515 17 6 0.7049 6.3770 -7.9777 18 16 1.2593 6.1122 -9.6803 19 6 -0.1201 6.7706 -10.5570 20 1 -0.9625 7.1733 -10.0144 21 6 -0.1239 6.7717 -11.9450 22 7 0.9032 6.2813 -12.6063 23 14 -1.5865 7.4690 -12.8744 24 1 -1.7662 8.8983 -12.5142 25 1 -1.3458 7.3527 -14.3353 26 1 -2.8104 6.7097 -12.5129 27 6 2.5399 6.1612 -3.3864 28 6 2.2720 2.0997 -1.1098 29 8 2.1363 1.6946 -2.2449 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2503 1.8640 1.6428 36 1 1.4942 2.0251 1.9391 37 1 1.3766 4.1124 0.8475 38 1 3.1107 4.1879 1.3048 39 1 1.9193 5.3466 -1.0258 40 1 2.7207 3.2970 -4.4220 41 1 1.1199 4.0247 -3.9650 42 1 0.7415 6.3597 -5.3502 43 1 -0.2256 5.8347 -7.8104 44 1 0.5402 7.4415 -7.8103 45 1 0.9007 6.2824 -13.5763 46 1 1.5575 6.5542 -3.1245 47 1 3.3406 6.8839 -3.2291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566832937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:19 Heat of formation + Delta-G solvation = -43.657179 kcal Electronic energy + Delta-G solvation = -26700.486831 eV Core-core repulsion = 22817.125321 eV Total energy + Delta-G solvation = -3883.361510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89838 -39.75524 -38.09879 -36.69009 -35.37369 -33.33813 -32.37656 -31.97030 -29.42198 -28.87142 -26.90692 -25.73711 -25.44066 -24.01611 -23.07076 -22.18215 -20.30176 -19.79472 -19.52914 -17.73091 -17.28646 -16.95548 -16.61621 -16.18632 -15.91124 -15.24006 -15.08691 -14.75782 -14.70686 -14.48492 -14.30098 -14.15388 -13.89255 -13.68206 -13.09615 -13.03366 -12.86572 -12.62488 -12.50245 -12.48901 -12.37676 -12.22322 -11.87731 -11.66242 -11.49837 -11.31039 -11.00100 -10.99539 -10.86001 -10.69431 -10.63367 -10.10154 -9.76262 -9.26775 -9.08697 -9.01096 -8.86756 -8.63166 -8.17115 -6.43574 -6.16243 -3.86250 2.31218 2.62576 3.11979 3.18382 3.27354 3.31268 3.36049 3.66445 3.81393 3.93973 4.02258 4.25742 4.33072 4.42307 4.49784 4.56454 4.65889 4.75301 4.83073 4.91391 4.94626 4.98589 5.02395 5.17562 5.18568 5.22683 5.29383 5.31976 5.44801 5.48273 5.53329 5.66616 5.79507 5.79917 5.95735 5.99315 6.15703 6.19731 6.22029 6.28387 6.66578 6.77331 6.83146 6.93711 7.64433 7.84980 7.98023 8.40348 8.73459 9.28714 10.91135 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.001789 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.104594 B =15646.813020 C =16268.075846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.626 5.626 4 C 0.106 3.894 5 C -0.137 4.137 6 C 0.054 3.946 7 H 0.084 0.916 8 N -0.655 5.655 9 C 0.063 3.937 10 H 0.076 0.924 11 C -0.122 4.122 12 C 0.124 3.876 13 H 0.113 0.887 14 N -0.725 5.725 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.148 4.148 28 C 0.526 3.474 29 O -0.505 6.505 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.349 0.651 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.092 0.908 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -5.788 35.743 36.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.363 5.363 4 C -0.017 4.017 5 C -0.175 4.175 6 C -0.060 4.060 7 H 0.101 0.899 8 N -0.288 5.288 9 C -0.046 4.046 10 H 0.094 0.906 11 C -0.162 4.162 12 C 0.017 3.983 13 H 0.130 0.870 14 N -0.378 5.378 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.187 4.187 28 C 0.311 3.689 29 O -0.378 6.378 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.169 0.831 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.632 -7.388 33.898 34.883 hybrid contribution -1.850 1.640 0.616 2.547 sum 1.782 -5.748 34.514 35.035 Atomic orbital electron populations 1.22153 0.95706 1.02333 1.02576 1.21309 0.94444 0.81030 1.02997 1.48327 1.66916 1.13948 1.07137 1.21981 1.01523 0.90369 0.87851 1.22853 1.03910 0.96526 0.94187 1.22271 0.98233 0.92454 0.93018 0.89859 1.60340 1.48782 1.12893 1.06779 1.22927 0.95839 0.96326 0.89553 0.90634 1.23458 1.02221 0.97359 0.93166 1.22287 0.93987 0.94626 0.87366 0.86957 1.45919 1.21603 1.64587 1.05711 1.20324 0.87812 0.77786 0.82212 1.90690 1.28302 1.43145 1.77167 1.23537 1.00530 1.03816 1.02541 1.85394 1.27207 1.80943 0.89847 1.22838 1.05138 1.46600 0.93783 0.91000 1.24994 0.96926 0.95137 0.96575 1.70013 1.29338 1.42867 1.08096 0.86226 0.81573 0.79382 0.78316 1.19970 1.20838 1.19955 1.23618 1.02854 0.96182 0.96005 1.20778 0.76592 0.87073 0.84420 1.90745 1.51401 1.74840 1.20792 0.91450 0.92594 0.91967 0.89994 0.90570 0.91143 0.90363 0.88964 0.89078 0.83080 0.90965 0.89201 0.76806 0.89243 0.89295 0.92174 0.88927 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.12 0.82 6.66 -4.04 -0.03 0.79 16 3 N -0.63 -4.65 2.94 -172.35 -0.51 -5.16 16 4 C 0.11 0.40 7.34 -3.12 -0.02 0.38 16 5 C -0.14 -0.46 6.60 -25.10 -0.17 -0.63 16 6 C 0.05 0.38 3.26 -67.72 -0.22 0.16 16 7 H 0.08 0.54 7.47 -51.93 -0.39 0.15 16 8 N -0.65 -5.06 6.37 -98.90 -0.63 -5.69 16 9 C 0.06 0.59 4.04 -66.90 -0.27 0.32 16 10 H 0.08 0.68 7.49 -51.93 -0.39 0.29 16 11 C -0.12 -1.58 6.93 -25.83 -0.18 -1.76 16 12 C 0.12 1.59 4.24 -67.03 -0.28 1.30 16 13 H 0.11 1.65 7.46 -51.93 -0.39 1.26 16 14 N -0.73 -10.49 5.36 -52.93 -0.28 -10.77 16 15 C 0.53 10.53 7.85 -10.98 -0.09 10.45 16 16 O -0.52 -12.40 15.46 5.56 0.09 -12.31 16 17 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.54 -15.64 9.50 30.94 0.29 -15.35 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.72 13.22 55.49 0.73 -25.99 16 23 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.15 -1.28 7.42 -25.92 -0.19 -1.47 16 28 C 0.53 5.51 7.66 -10.77 -0.08 5.42 16 29 O -0.51 -7.62 16.76 5.55 0.09 -7.52 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.31 8.04 -51.93 -0.42 -0.11 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.35 1.85 8.21 -39.29 -0.32 1.53 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.40 4.58 8.73 -40.82 -0.36 4.22 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -38.36 402.20 -10.12 -48.48 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.71 Total: 2.07 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -0.73 Total: -2.09 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.69 Total: -47.61 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.36 -10.12 -48.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.827 kcal (2) G-P(sol) polarization free energy of solvation -38.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds