Wall clock time and date at job start Wed Apr 1 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 7 7 H 1.08994 * 110.49106 * 266.12244 * 6 5 4 8 8 N 1.46905 * 110.48642 * 143.47464 * 6 5 4 9 9 C 1.46900 * 110.99959 * 155.00081 * 8 6 5 10 10 H 1.08994 * 112.84683 * 334.67268 * 9 8 6 11 11 C 1.53783 * 113.61111 * 105.86412 * 9 8 6 12 12 C 1.53954 * 87.01690 * 139.95409 * 11 9 8 13 13 H 1.08993 * 113.54247 * 89.18777 * 12 11 9 14 14 N 1.46502 * 113.74112 * 220.05838 * 12 11 9 15 15 C 1.34781 * 119.99693 * 252.59258 * 14 12 11 16 16 O 1.21279 * 120.00145 * 0.02562 * 15 14 12 17 17 C 1.50702 * 119.99636 * 179.97438 * 15 14 12 18 18 S 1.81004 * 109.46669 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99589 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99681 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99636 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47482 * 60.00233 * 23 21 19 25 25 H 1.48511 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47173 * 299.99792 * 23 21 19 27 27 C 1.53771 * 113.61493 * 203.47186 * 9 8 6 28 28 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 29 29 O 1.21286 * 124.90539 * 359.55259 * 28 3 2 30 30 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 32 32 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 33 33 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 34 34 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 35 35 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 36 36 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 37 37 H 1.08995 * 110.97082 * 92.66028 * 5 4 3 38 38 H 1.08996 * 110.96783 * 216.38630 * 5 4 3 39 39 H 1.00894 * 110.99600 * 31.05056 * 8 6 5 40 40 H 1.09000 * 113.61319 * 254.53068 * 11 9 8 41 41 H 1.09002 * 113.61678 * 25.43483 * 11 9 8 42 42 H 0.97000 * 120.00171 * 72.59530 * 14 12 11 43 43 H 1.08995 * 109.47752 * 300.00232 * 17 15 14 44 44 H 1.09001 * 109.47044 * 60.00884 * 17 15 14 45 45 H 0.97003 * 119.99675 * 180.02562 * 22 21 19 46 46 H 1.09003 * 113.61515 * 334.56634 * 27 9 8 47 47 H 1.09001 * 113.61518 * 105.38471 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 6 2.7499 3.4854 -0.7357 7 1 3.8312 3.5599 -0.8505 8 7 2.0736 4.5009 -1.5539 9 6 2.8312 4.7778 -2.7816 10 1 3.8945 4.5603 -2.6809 11 6 2.1963 4.1755 -4.0462 12 6 2.5836 5.4808 -4.7648 13 1 3.5792 5.4551 -5.2077 14 7 1.5606 5.9690 -5.6929 15 6 1.7575 5.8754 -7.0230 16 8 2.7814 5.3865 -7.4515 17 6 0.7049 6.3770 -7.9777 18 16 1.2593 6.1122 -9.6803 19 6 -0.1201 6.7706 -10.5570 20 1 -0.9625 7.1733 -10.0144 21 6 -0.1239 6.7717 -11.9450 22 7 0.9032 6.2813 -12.6063 23 14 -1.5865 7.4690 -12.8744 24 1 -1.7662 8.8983 -12.5142 25 1 -1.3458 7.3527 -14.3353 26 1 -2.8104 6.7097 -12.5129 27 6 2.5399 6.1612 -3.3864 28 6 2.2720 2.0997 -1.1098 29 8 2.1363 1.6946 -2.2449 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2503 1.8640 1.6428 36 1 1.4942 2.0251 1.9391 37 1 1.3766 4.1124 0.8475 38 1 3.1107 4.1879 1.3048 39 1 1.9193 5.3466 -1.0258 40 1 2.7207 3.2970 -4.4220 41 1 1.1199 4.0247 -3.9650 42 1 0.7415 6.3597 -5.3502 43 1 -0.2256 5.8347 -7.8104 44 1 0.5402 7.4415 -7.8103 45 1 0.9007 6.2824 -13.5763 46 1 1.5575 6.5542 -3.1245 47 1 3.3406 6.8839 -3.2291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566832937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:18 Heat of formation + Delta-G solvation = -73.705325 kcal Electronic energy + Delta-G solvation = -26701.789817 eV Core-core repulsion = 22817.125321 eV Total energy + Delta-G solvation = -3884.664496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56164 -40.94082 -39.35564 -37.44008 -36.11531 -34.59765 -34.43676 -32.78516 -30.67229 -29.71721 -27.71544 -27.48787 -26.62292 -24.67913 -23.92886 -22.64618 -21.75075 -20.78414 -20.17720 -19.75376 -17.97503 -17.83507 -17.50992 -17.48482 -16.88357 -16.65130 -16.41949 -16.24736 -15.94917 -15.52826 -15.23679 -14.91890 -14.65817 -14.64474 -14.49252 -14.26786 -13.87660 -13.54887 -13.47335 -13.35787 -13.17788 -13.10300 -12.86626 -12.85788 -12.81725 -12.64897 -12.40372 -12.05548 -11.95851 -11.79793 -11.62195 -11.56579 -11.13246 -10.92557 -10.85290 -10.28833 -10.02390 -9.66450 -9.42398 -8.67899 -8.34692 -6.13460 1.26352 1.43874 1.46264 1.56245 1.59790 1.60841 2.09539 2.26583 2.31720 2.98983 3.20007 3.32560 3.36488 3.53618 3.56442 3.66547 3.93545 3.99733 4.02769 4.06326 4.14038 4.21885 4.27027 4.30321 4.44138 4.47311 4.49184 4.57312 4.69492 4.81550 4.82809 4.84363 4.93049 5.00170 5.02649 5.08052 5.13963 5.20672 5.24931 5.40913 5.58604 5.68926 5.98114 6.18349 6.19291 6.49264 6.54173 7.05855 7.26417 7.27913 8.74437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.001789 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.104594 B =15646.813020 C =16268.075846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 N -0.625 5.625 4 C 0.100 3.900 5 C -0.122 4.122 6 C 0.054 3.946 7 H 0.091 0.909 8 N -0.661 5.661 9 C 0.078 3.922 10 H 0.079 0.921 11 C -0.126 4.126 12 C 0.110 3.890 13 H 0.090 0.910 14 N -0.699 5.699 15 C 0.532 3.468 16 O -0.569 6.569 17 C -0.129 4.129 18 S -0.155 6.155 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.118 4.118 28 C 0.506 3.494 29 O -0.570 6.570 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.368 0.632 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.417 0.583 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.113 0.887 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -3.784 39.716 39.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.004 4.004 3 N -0.360 5.360 4 C -0.022 4.022 5 C -0.159 4.159 6 C -0.060 4.060 7 H 0.108 0.892 8 N -0.296 5.296 9 C -0.032 4.032 10 H 0.097 0.903 11 C -0.166 4.166 12 C 0.004 3.996 13 H 0.108 0.892 14 N -0.352 5.352 15 C 0.318 3.682 16 O -0.448 6.448 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.157 4.157 28 C 0.293 3.707 29 O -0.448 6.448 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.191 0.809 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.254 0.746 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.071 -5.357 38.004 38.436 hybrid contribution -1.363 0.895 -0.448 1.691 sum 0.708 -4.462 37.556 37.827 Atomic orbital electron populations 1.22086 0.95544 1.02884 1.01517 1.21412 0.94574 0.81111 1.03288 1.48543 1.65384 1.14204 1.07870 1.22325 1.03322 0.90057 0.86528 1.22895 1.05171 0.96631 0.91240 1.22323 0.98384 0.90070 0.95209 0.89194 1.60113 1.48757 1.13994 1.06728 1.22700 0.95725 0.95755 0.89025 0.90316 1.23396 1.01190 0.95996 0.96058 1.22489 0.92386 0.95981 0.88710 0.89173 1.45698 1.22609 1.62917 1.03962 1.20158 0.86769 0.77513 0.83741 1.90678 1.30128 1.45683 1.78281 1.23375 1.01177 1.05645 0.97782 1.85604 1.29340 1.81748 0.96050 1.23178 1.05169 1.46684 0.94467 0.89851 1.26179 1.00309 0.95216 0.97633 1.70189 1.31876 1.44249 1.08492 0.84971 0.77192 0.79057 0.76555 1.18451 1.20327 1.18738 1.23479 1.04818 0.95936 0.91425 1.21604 0.76118 0.88825 0.84174 1.90709 1.54376 1.76345 1.23358 0.90215 0.91014 0.95407 0.92664 0.87270 0.89166 0.88360 0.88441 0.85869 0.80881 0.94765 0.90473 0.74606 0.87527 0.86869 0.91985 0.86870 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 10.24 71.98 0.74 -1.29 16 2 C 0.12 1.50 6.66 86.38 0.58 2.08 16 3 N -0.63 -8.63 2.94 -817.66 -2.40 -11.04 16 4 C 0.10 0.40 7.34 86.83 0.64 1.04 16 5 C -0.12 -0.34 6.60 31.65 0.21 -0.13 16 6 C 0.05 0.65 3.26 44.91 0.15 0.79 16 7 H 0.09 0.99 7.47 -2.39 -0.02 0.97 16 8 N -0.66 -8.84 6.37 -466.82 -2.97 -11.82 16 9 C 0.08 1.37 4.04 45.44 0.18 1.55 16 10 H 0.08 1.35 7.49 -2.39 -0.02 1.33 16 11 C -0.13 -3.43 6.93 31.18 0.22 -3.21 16 12 C 0.11 2.82 4.24 45.58 0.19 3.01 16 13 H 0.09 2.77 7.46 -2.39 -0.02 2.75 16 14 N -0.70 -19.75 5.36 -439.76 -2.36 -22.11 16 15 C 0.53 21.38 7.85 87.66 0.69 22.07 16 16 O -0.57 -28.55 15.46 -3.03 -0.05 -28.60 16 17 C -0.13 -5.42 6.16 71.24 0.44 -4.98 16 18 S -0.15 -8.98 20.57 -56.49 -1.16 -10.14 16 19 C -0.55 -32.25 9.50 67.96 0.65 -31.61 16 20 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 21 C 0.01 0.66 5.49 84.86 0.47 1.12 16 22 N -0.91 -57.54 13.22 21.65 0.29 -57.25 16 23 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 C -0.12 -1.72 7.42 31.12 0.23 -1.49 16 28 C 0.51 10.73 7.66 87.87 0.67 11.41 16 29 O -0.57 -18.67 16.76 -3.05 -0.05 -18.73 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.99 7.93 -2.39 -0.02 0.98 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.10 0.23 8.04 -2.39 -0.02 0.21 16 38 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.37 2.50 8.21 -89.70 -0.74 1.76 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.42 8.66 8.73 -92.71 -0.81 7.86 16 43 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 44 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 45 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.11 1.26 8.12 -2.39 -0.02 1.24 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -91.70 402.20 -1.20 -92.90 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.56 Total: 19.71 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 6.04 Total: 0.36 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -7.45 Total: -102.21 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.10 Total: -47.32 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -91.70 -1.20 -92.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566832937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.194 kcal (2) G-P(sol) polarization free energy of solvation -91.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds