Wall clock time and date at job start Wed Apr 1 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47181 * 2 1 4 4 C 1.46763 * 124.35144 * 269.99764 * 3 2 1 5 5 C 1.54479 * 105.47384 * 196.99178 * 4 3 2 6 6 C 1.54627 * 101.76631 * 334.58904 * 5 4 3 7 7 H 1.09003 * 110.60071 * 143.53060 * 6 5 4 8 8 N 1.46905 * 110.48418 * 266.11742 * 6 5 4 9 9 C 1.46896 * 110.99827 * 201.22933 * 8 6 5 10 10 H 1.09001 * 110.64290 * 31.85788 * 9 8 6 11 11 C 1.55163 * 110.72166 * 154.99860 * 9 8 6 12 12 C 1.54901 * 101.58294 * 154.04097 * 11 9 8 13 13 N 1.47422 * 104.83471 * 322.99332 * 12 11 9 14 14 C 1.34775 * 125.65226 * 204.09464 * 13 12 11 15 15 O 1.21282 * 120.00577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46692 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46740 * 119.99825 * 22 20 18 25 25 H 1.48497 * 109.47025 * 240.00183 * 22 20 18 26 26 C 1.47020 * 108.70252 * 24.35400 * 13 12 11 27 27 C 1.34425 * 124.34776 * 89.97245 * 3 2 1 28 28 O 1.21284 * 124.94264 * 359.58450 * 27 3 2 29 29 H 1.08999 * 109.46840 * 60.00007 * 1 2 3 30 30 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47401 * 299.99801 * 1 2 3 32 32 H 1.08996 * 109.47401 * 240.00198 * 2 1 3 33 33 H 1.09007 * 109.47072 * 119.99850 * 2 1 3 34 34 H 1.08997 * 110.24755 * 315.99477 * 4 3 2 35 35 H 1.09006 * 110.24111 * 77.90842 * 4 3 2 36 36 H 1.08997 * 110.97163 * 216.46626 * 5 4 3 37 37 H 1.09005 * 110.96415 * 92.70486 * 5 4 3 38 38 H 1.00901 * 110.99881 * 77.27352 * 8 6 5 39 39 H 1.09002 * 111.00122 * 35.96885 * 11 9 8 40 40 H 1.09000 * 111.00515 * 272.11932 * 11 9 8 41 41 H 1.09003 * 110.36950 * 204.15456 * 12 11 9 42 42 H 1.09003 * 110.46063 * 81.87816 * 12 11 9 43 43 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 44 44 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 45 45 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.88325 * 118.13022 * 26 13 12 47 47 H 1.08996 * 109.88459 * 239.29360 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1739 3.3445 -0.7485 6 6 2.7686 3.4756 0.7379 7 1 3.6302 3.7475 1.3478 8 7 1.6968 4.4683 0.8928 9 6 1.6431 4.9742 2.2709 10 1 2.6385 4.9865 2.7148 11 6 1.0062 6.3885 2.3121 12 6 0.4363 6.4312 3.7518 13 7 -0.0527 5.0636 4.0048 14 6 -1.0070 4.7224 4.8933 15 8 -1.3314 3.5606 5.0187 16 6 -1.6709 5.7847 5.7312 17 16 -2.8972 5.0167 6.8185 18 6 -3.5002 6.4446 7.6564 19 1 -3.0982 7.4189 7.4208 20 6 -4.4925 6.3173 8.6185 21 7 -4.9828 5.1299 8.9053 22 14 -5.1313 7.8311 9.5074 23 1 -4.4215 9.0354 9.0065 24 1 -6.5877 7.9749 9.2558 25 1 -4.8927 7.6861 10.9659 26 6 0.6773 4.1328 3.1318 27 6 2.2706 2.0965 1.1099 28 8 2.1204 1.6947 2.2443 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.8328 1.5533 -1.9381 35 1 1.3635 2.5292 -1.6439 36 1 2.9301 4.2519 -1.3009 37 1 4.2328 3.1039 -0.8443 38 1 0.8062 4.0854 0.6132 39 1 0.2096 6.4799 1.5737 40 1 1.7612 7.1613 2.1676 41 1 -0.3850 7.1452 3.8137 42 1 1.2192 6.6919 4.4639 43 1 -2.1638 6.5061 5.0794 44 1 -0.9193 6.2941 6.3343 45 1 -5.6760 5.0409 9.5780 46 1 1.2403 3.4218 3.7364 47 1 -0.0235 3.6017 2.4877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567090383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:16 Heat of formation + Delta-G solvation = -56.958357 kcal Electronic energy + Delta-G solvation = -27680.373423 eV Core-core repulsion = 23796.435130 eV Total energy + Delta-G solvation = -3883.938293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10713 -39.67138 -37.53618 -36.79936 -35.36992 -33.10337 -32.39925 -30.75467 -29.58615 -29.34110 -27.81062 -26.19901 -25.42018 -23.93533 -23.25118 -21.92313 -21.11040 -19.81086 -19.25045 -17.70479 -17.35864 -17.01959 -16.55504 -16.25788 -16.04974 -15.08832 -14.79699 -14.76959 -14.73986 -14.46882 -13.97103 -13.90528 -13.85027 -13.75528 -13.32144 -13.23285 -12.89457 -12.69905 -12.49858 -12.33256 -12.28968 -12.21198 -11.95915 -11.71395 -11.70087 -11.48067 -11.33030 -11.05058 -10.98223 -10.94860 -10.72493 -10.40379 -9.77541 -9.36052 -9.11623 -9.04576 -8.87827 -8.41186 -8.18290 -6.46569 -6.18640 -3.88934 2.18205 2.59213 2.95227 3.14931 3.23591 3.27990 3.33172 3.55452 3.72914 3.90488 4.02747 4.22933 4.37679 4.41835 4.46106 4.62613 4.67219 4.79853 4.88311 4.97749 5.03876 5.10330 5.13037 5.14085 5.16409 5.22375 5.35524 5.41792 5.42713 5.53055 5.54699 5.65456 5.68097 5.70491 5.85822 5.87874 5.93747 6.02997 6.17889 6.18325 6.45508 6.50720 6.69466 6.77176 7.62669 7.75259 7.82888 8.38477 8.64693 9.26479 10.88879 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.002260 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.803150 B =12388.205801 C =13371.679381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.099 3.901 5 C -0.124 4.124 6 C 0.054 3.946 7 H 0.114 0.886 8 N -0.645 5.645 9 C 0.073 3.927 10 H 0.097 0.903 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.625 5.625 14 C 0.546 3.454 15 O -0.514 6.514 16 C -0.145 4.145 17 S -0.062 6.062 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.090 3.910 27 C 0.480 3.520 28 O -0.513 6.513 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.348 0.652 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.077 0.923 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.314 -1.820 -25.571 32.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.024 4.024 5 C -0.162 4.162 6 C -0.059 4.059 7 H 0.132 0.868 8 N -0.276 5.276 9 C -0.037 4.037 10 H 0.115 0.885 11 C -0.156 4.156 12 C -0.026 4.026 13 N -0.363 5.363 14 C 0.334 3.666 15 O -0.388 6.388 16 C -0.295 4.295 17 S 0.165 5.835 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.034 4.034 27 C 0.265 3.735 28 O -0.387 6.387 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.168 0.832 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.914 -3.465 -24.835 31.409 hybrid contribution -0.515 1.410 0.792 1.697 sum 18.399 -2.055 -24.043 30.345 Atomic orbital electron populations 1.22165 0.95472 1.02667 1.02660 1.21370 0.94635 0.80972 1.03048 1.48397 1.65842 1.13857 1.07373 1.22155 0.99832 0.92981 0.87446 1.22686 1.00024 0.98997 0.94523 1.22525 0.96726 0.88105 0.98584 0.86822 1.60895 1.08622 1.35798 1.22279 1.22808 0.99426 0.94697 0.86787 0.88505 1.22778 1.00758 0.95960 0.96101 1.22346 0.99358 0.84755 0.96103 1.48451 1.39345 1.08138 1.40368 1.20058 0.77883 0.89956 0.78700 1.90718 1.61844 1.20032 1.66221 1.23497 1.03622 1.00636 1.01789 1.85435 1.42010 1.12401 1.43701 1.22900 1.25529 0.94099 1.25607 0.90884 1.25005 0.95562 0.96962 0.96152 1.70037 1.26688 1.22207 1.31368 0.86107 0.78601 0.81570 0.79157 1.19610 1.20585 1.20571 1.22590 0.94209 0.92883 0.93766 1.21948 0.78100 0.88658 0.84816 1.90801 1.52227 1.74786 1.20857 0.92442 0.91259 0.91952 0.90421 0.90010 0.90307 0.90964 0.87786 0.89509 0.83239 0.90054 0.89397 0.90066 0.91276 0.89335 0.89301 0.92263 0.90502 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 0.91 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -4.86 2.93 -172.41 -0.51 -5.37 16 4 C 0.10 0.44 7.35 -3.12 -0.02 0.41 16 5 C -0.12 -0.49 6.89 -25.10 -0.17 -0.67 16 6 C 0.05 0.39 3.23 -67.72 -0.22 0.17 16 7 H 0.11 0.79 7.52 -51.93 -0.39 0.40 16 8 N -0.64 -4.97 6.19 -97.83 -0.61 -5.58 16 9 C 0.07 0.70 3.24 -65.87 -0.21 0.48 16 10 H 0.10 0.87 7.49 -51.93 -0.39 0.48 16 11 C -0.12 -1.00 6.77 -24.58 -0.17 -1.16 16 12 C 0.10 1.11 6.69 -2.54 -0.02 1.09 16 13 N -0.62 -10.00 3.33 -170.52 -0.57 -10.57 16 14 C 0.55 11.50 7.87 -10.98 -0.09 11.42 16 15 O -0.51 -13.08 16.19 5.56 0.09 -12.99 16 16 C -0.14 -3.14 5.16 36.01 0.19 -2.95 16 17 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 18 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 19 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.72 13.22 55.49 0.73 -25.98 16 22 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.09 1.30 5.42 -3.06 -0.02 1.28 16 27 C 0.48 5.03 7.04 -10.86 -0.08 4.96 16 28 O -0.51 -7.86 15.85 5.55 0.09 -7.77 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.74 7.93 -51.92 -0.41 0.33 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.35 2.94 7.83 -39.29 -0.31 2.64 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.89 7.48 -51.93 -0.39 0.50 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.76 7.85 -51.91 -0.41 1.35 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.08 1.31 7.27 -51.93 -0.38 0.93 16 47 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -38.14 395.32 -9.97 -48.12 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.68 Total: -0.27 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.25 Total: 1.68 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.94 Total: -47.50 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.18 Total: -20.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.14 -9.97 -48.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567090383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.842 kcal (2) G-P(sol) polarization free energy of solvation -38.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds