Wall clock time and date at job start Wed Apr 1 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47181 * 2 1 4 4 C 1.46763 * 124.35144 * 269.99764 * 3 2 1 5 5 C 1.54479 * 105.47384 * 196.99178 * 4 3 2 6 6 C 1.54627 * 101.76631 * 334.58904 * 5 4 3 7 7 H 1.09003 * 110.60071 * 143.53060 * 6 5 4 8 8 N 1.46905 * 110.48418 * 266.11742 * 6 5 4 9 9 C 1.46896 * 110.99827 * 201.22933 * 8 6 5 10 10 H 1.09001 * 110.64290 * 31.85788 * 9 8 6 11 11 C 1.55163 * 110.72166 * 154.99860 * 9 8 6 12 12 C 1.54901 * 101.58294 * 154.04097 * 11 9 8 13 13 N 1.47422 * 104.83471 * 322.99332 * 12 11 9 14 14 C 1.34775 * 125.65226 * 204.09464 * 13 12 11 15 15 O 1.21282 * 120.00577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46692 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46740 * 119.99825 * 22 20 18 25 25 H 1.48497 * 109.47025 * 240.00183 * 22 20 18 26 26 C 1.47020 * 108.70252 * 24.35400 * 13 12 11 27 27 C 1.34425 * 124.34776 * 89.97245 * 3 2 1 28 28 O 1.21284 * 124.94264 * 359.58450 * 27 3 2 29 29 H 1.08999 * 109.46840 * 60.00007 * 1 2 3 30 30 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47401 * 299.99801 * 1 2 3 32 32 H 1.08996 * 109.47401 * 240.00198 * 2 1 3 33 33 H 1.09007 * 109.47072 * 119.99850 * 2 1 3 34 34 H 1.08997 * 110.24755 * 315.99477 * 4 3 2 35 35 H 1.09006 * 110.24111 * 77.90842 * 4 3 2 36 36 H 1.08997 * 110.97163 * 216.46626 * 5 4 3 37 37 H 1.09005 * 110.96415 * 92.70486 * 5 4 3 38 38 H 1.00901 * 110.99881 * 77.27352 * 8 6 5 39 39 H 1.09002 * 111.00122 * 35.96885 * 11 9 8 40 40 H 1.09000 * 111.00515 * 272.11932 * 11 9 8 41 41 H 1.09003 * 110.36950 * 204.15456 * 12 11 9 42 42 H 1.09003 * 110.46063 * 81.87816 * 12 11 9 43 43 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 44 44 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 45 45 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.88325 * 118.13022 * 26 13 12 47 47 H 1.08996 * 109.88459 * 239.29360 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1739 3.3445 -0.7485 6 6 2.7686 3.4756 0.7379 7 1 3.6302 3.7475 1.3478 8 7 1.6968 4.4683 0.8928 9 6 1.6431 4.9742 2.2709 10 1 2.6385 4.9865 2.7148 11 6 1.0062 6.3885 2.3121 12 6 0.4363 6.4312 3.7518 13 7 -0.0527 5.0636 4.0048 14 6 -1.0070 4.7224 4.8933 15 8 -1.3314 3.5606 5.0187 16 6 -1.6709 5.7847 5.7312 17 16 -2.8972 5.0167 6.8185 18 6 -3.5002 6.4446 7.6564 19 1 -3.0982 7.4189 7.4208 20 6 -4.4925 6.3173 8.6185 21 7 -4.9828 5.1299 8.9053 22 14 -5.1313 7.8311 9.5074 23 1 -4.4215 9.0354 9.0065 24 1 -6.5877 7.9749 9.2558 25 1 -4.8927 7.6861 10.9659 26 6 0.6773 4.1328 3.1318 27 6 2.2706 2.0965 1.1099 28 8 2.1204 1.6947 2.2443 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.8328 1.5533 -1.9381 35 1 1.3635 2.5292 -1.6439 36 1 2.9301 4.2519 -1.3009 37 1 4.2328 3.1039 -0.8443 38 1 0.8062 4.0854 0.6132 39 1 0.2096 6.4799 1.5737 40 1 1.7612 7.1613 2.1676 41 1 -0.3850 7.1452 3.8137 42 1 1.2192 6.6919 4.4639 43 1 -2.1638 6.5061 5.0794 44 1 -0.9193 6.2941 6.3343 45 1 -5.6760 5.0409 9.5780 46 1 1.2403 3.4218 3.7364 47 1 -0.0235 3.6017 2.4877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567090383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:15 Heat of formation + Delta-G solvation = -86.032592 kcal Electronic energy + Delta-G solvation = -27681.634176 eV Core-core repulsion = 23796.435130 eV Total energy + Delta-G solvation = -3885.199046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83015 -40.98446 -38.82943 -37.61257 -36.22803 -34.61230 -33.92676 -31.89606 -30.88474 -30.06394 -28.76104 -27.71418 -26.96261 -24.54872 -24.36076 -22.46174 -21.93963 -20.80208 -20.49121 -19.62012 -18.17499 -18.10323 -17.68981 -17.15623 -17.06036 -16.90876 -16.48323 -15.95607 -15.67453 -15.57801 -15.19872 -14.97632 -14.59502 -14.54879 -14.51408 -14.37350 -13.92303 -13.72529 -13.67087 -13.51852 -13.29492 -13.16588 -12.98222 -12.92494 -12.86386 -12.72734 -12.61749 -12.18023 -12.11260 -11.92186 -11.78209 -11.63806 -11.26427 -11.18044 -11.06406 -10.31421 -9.83625 -9.76031 -9.61752 -8.72855 -8.36845 -6.16872 1.19663 1.40109 1.40938 1.42728 1.48215 1.56073 2.00394 2.02048 2.24807 2.89996 2.97310 3.20496 3.31665 3.43504 3.59032 3.63205 3.85484 3.95770 4.03795 4.07563 4.17058 4.18453 4.21850 4.27134 4.37049 4.38382 4.40040 4.53897 4.63522 4.67082 4.67365 4.77476 4.79467 4.86371 5.06345 5.09102 5.14931 5.17815 5.23880 5.28267 5.39483 5.58039 5.76168 5.97311 6.10364 6.17875 6.32475 7.03327 7.03990 7.08749 8.73037 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.002260 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.803150 B =12388.205801 C =13371.679381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.616 5.616 4 C 0.093 3.907 5 C -0.108 4.108 6 C 0.054 3.946 7 H 0.119 0.881 8 N -0.626 5.626 9 C 0.085 3.915 10 H 0.109 0.891 11 C -0.100 4.100 12 C 0.084 3.916 13 N -0.616 5.616 14 C 0.539 3.461 15 O -0.574 6.574 16 C -0.114 4.114 17 S -0.159 6.159 18 C -0.542 4.542 19 H 0.085 0.915 20 C 0.010 3.990 21 N -0.913 5.913 22 Si 1.004 2.996 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.094 3.906 27 C 0.465 3.535 28 O -0.578 6.578 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.344 0.656 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.042 0.958 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.256 1.625 -28.478 35.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.350 5.350 4 C -0.029 4.029 5 C -0.146 4.146 6 C -0.059 4.059 7 H 0.136 0.864 8 N -0.256 5.256 9 C -0.026 4.026 10 H 0.127 0.873 11 C -0.138 4.138 12 C -0.037 4.037 13 N -0.351 5.351 14 C 0.328 3.672 15 O -0.453 6.453 16 C -0.265 4.265 17 S 0.068 5.932 18 C -0.690 4.690 19 H 0.103 0.897 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.825 3.175 23 H -0.177 1.177 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.031 4.031 27 C 0.251 3.749 28 O -0.456 6.456 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.164 0.836 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 20.911 0.026 -27.845 34.823 hybrid contribution -1.029 0.252 1.561 1.886 sum 19.882 0.278 -26.284 32.958 Atomic orbital electron populations 1.22113 0.96060 1.02993 1.01204 1.21445 0.94111 0.81280 1.03591 1.48612 1.64301 1.13972 1.08138 1.22476 1.00864 0.93221 0.86297 1.22719 1.00940 0.99451 0.91519 1.22694 0.96321 0.85693 1.01222 0.86352 1.61047 1.08648 1.35589 1.20341 1.22820 0.98505 0.94444 0.86811 0.87265 1.22777 1.01491 0.95683 0.93869 1.22820 1.00310 0.81841 0.98747 1.48450 1.37322 1.10931 1.38402 1.20011 0.78830 0.88904 0.79494 1.90692 1.64193 1.22091 1.68353 1.23270 1.02000 1.00368 1.00879 1.85703 1.45357 1.15703 1.46415 1.23212 1.25928 0.93983 1.25881 0.89657 1.26217 0.95564 1.00739 0.96900 1.70212 1.27443 1.25106 1.32230 0.84833 0.78019 0.77102 0.77523 1.17741 1.19823 1.19914 1.22688 0.94142 0.93054 0.93250 1.22688 0.77621 0.90207 0.84422 1.90769 1.55085 1.76320 1.23452 0.90868 0.90179 0.96176 0.86700 0.92544 0.87615 0.90056 0.86000 0.87658 0.83644 0.89707 0.85670 0.89120 0.89388 0.87079 0.87315 0.91967 0.93992 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 71.98 0.74 -2.05 16 2 C 0.12 1.76 6.65 86.38 0.57 2.33 16 3 N -0.62 -9.29 2.93 -817.98 -2.40 -11.69 16 4 C 0.09 0.53 7.35 86.83 0.64 1.17 16 5 C -0.11 -0.46 6.89 31.65 0.22 -0.24 16 6 C 0.05 0.68 3.23 44.91 0.15 0.83 16 7 H 0.12 1.42 7.52 -2.39 -0.02 1.40 16 8 N -0.63 -8.39 6.19 -463.42 -2.87 -11.26 16 9 C 0.09 1.48 3.24 46.11 0.15 1.63 16 10 H 0.11 1.70 7.49 -2.39 -0.02 1.69 16 11 C -0.10 -1.33 6.77 31.99 0.22 -1.11 16 12 C 0.08 1.69 6.69 86.85 0.58 2.27 16 13 N -0.62 -19.87 3.33 -811.80 -2.70 -22.57 16 14 C 0.54 23.61 7.87 87.66 0.69 24.30 16 15 O -0.57 -31.41 16.19 -3.04 -0.05 -31.46 16 16 C -0.11 -4.98 5.16 71.24 0.37 -4.61 16 17 S -0.16 -9.38 20.57 -56.49 -1.16 -10.55 16 18 C -0.54 -31.92 9.50 67.96 0.65 -31.27 16 19 H 0.09 4.63 7.80 -2.91 -0.02 4.61 16 20 C 0.01 0.59 5.49 84.86 0.47 1.06 16 21 N -0.91 -57.77 13.22 21.65 0.29 -57.48 16 22 Si 1.00 44.47 29.55 68.60 2.03 46.49 16 23 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.09 2.81 5.42 86.73 0.47 3.28 16 27 C 0.46 10.04 7.04 87.90 0.62 10.66 16 28 O -0.58 -19.46 15.85 -3.04 -0.05 -19.50 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.13 7.93 -2.38 -0.02 1.11 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.12 0.18 8.08 -2.39 -0.02 0.16 16 37 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.34 5.43 7.83 -89.69 -0.70 4.73 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.70 7.48 -2.39 -0.02 1.68 16 42 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.11 4.32 7.85 -2.39 -0.02 4.30 16 44 H 0.11 4.29 8.14 -2.40 -0.02 4.27 16 45 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 46 H 0.04 1.56 7.27 -2.39 -0.02 1.55 16 47 H 0.04 1.21 7.51 -2.39 -0.02 1.19 16 Total: -1.00 -92.17 395.32 -0.13 -92.30 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.27 Total: 17.47 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.52 Total: 8.25 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -7.68 Total: -103.01 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.10 Total: -50.97 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.16 Total: -10.55 kcal Total: -92.17 -0.13 -92.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567090383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.267 kcal (2) G-P(sol) polarization free energy of solvation -92.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds