Wall clock time and date at job start Wed Apr 1 2020 00:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47016 * 2 1 4 4 C 1.46758 * 124.35033 * 269.94718 * 3 2 1 5 5 C 1.54474 * 105.47491 * 197.03824 * 4 3 2 6 6 C 1.54629 * 101.76449 * 334.58592 * 5 4 3 7 7 H 1.08997 * 110.60385 * 266.06359 * 6 5 4 8 8 N 1.46903 * 110.48773 * 143.47707 * 6 5 4 9 9 C 1.46897 * 111.00170 * 158.77176 * 8 6 5 10 10 H 1.08993 * 110.64061 * 31.86049 * 9 8 6 11 11 C 1.55157 * 110.71795 * 154.99744 * 9 8 6 12 12 C 1.54918 * 101.58155 * 154.04052 * 11 9 8 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34781 * 125.64420 * 204.16865 * 13 12 11 15 15 O 1.21281 * 119.99960 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99923 * 359.94683 * 14 13 12 17 17 S 1.81002 * 109.47071 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99892 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99625 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99678 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47183 * 90.00090 * 22 20 18 24 24 H 1.48498 * 109.46982 * 209.99929 * 22 20 18 25 25 H 1.48503 * 109.47213 * 330.00372 * 22 20 18 26 26 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 27 27 C 1.34419 * 124.34713 * 89.97687 * 3 2 1 28 28 O 1.21283 * 124.94705 * 359.60307 * 27 3 2 29 29 H 1.09006 * 109.47663 * 299.99809 * 1 2 3 30 30 H 1.09003 * 109.47377 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47357 * 240.00045 * 2 1 3 33 33 H 1.09003 * 109.47377 * 119.99974 * 2 1 3 34 34 H 1.09000 * 110.24611 * 316.04649 * 4 3 2 35 35 H 1.09007 * 110.24307 * 77.95371 * 4 3 2 36 36 H 1.09001 * 110.97214 * 216.47096 * 5 4 3 37 37 H 1.08994 * 110.97249 * 92.70700 * 5 4 3 38 38 H 1.00897 * 111.00119 * 34.81403 * 8 6 5 39 39 H 1.09001 * 111.00846 * 272.11760 * 11 9 8 40 40 H 1.09000 * 111.00346 * 35.97292 * 11 9 8 41 41 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 42 42 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 43 43 H 1.08995 * 109.47462 * 299.99937 * 16 14 13 44 44 H 1.09009 * 109.46879 * 60.00324 * 16 14 13 45 45 H 0.97000 * 119.99587 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.88350 * 239.52260 * 26 13 12 47 47 H 1.08998 * 109.88602 * 118.35926 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1616 -1.2116 5 6 3.1754 3.3436 -0.7484 6 6 2.7695 3.4753 0.7379 7 1 1.9753 4.2127 0.8547 8 7 3.9324 3.8399 1.5581 9 6 3.5116 4.4493 2.8268 10 1 2.5618 4.0299 3.1580 11 6 4.6029 4.2629 3.9138 12 6 4.3209 5.4667 4.8472 13 7 3.9328 6.5634 3.9417 14 6 4.0368 7.8796 4.2126 15 8 3.6857 8.6978 3.3891 16 6 4.5890 8.3347 5.5389 17 16 4.6019 10.1436 5.5985 18 6 5.2747 10.3920 7.2079 19 1 5.5375 9.5422 7.8204 20 6 5.4669 11.6799 7.6885 21 7 5.1462 12.7156 6.9422 22 14 6.1796 11.9432 9.3950 23 1 7.6599 12.0220 9.3066 24 1 5.6496 13.2088 9.9629 25 1 5.7959 10.8080 10.2723 26 6 3.4144 5.9837 2.6941 27 6 2.2706 2.0965 1.1098 28 8 2.1208 1.6946 2.2443 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8335 1.5524 -1.9378 35 1 1.3649 2.5294 -1.6444 36 1 2.9322 4.2511 -1.3010 37 1 4.2341 3.1026 -0.8437 38 1 4.5545 4.4519 1.0517 39 1 4.4705 3.3190 4.4426 40 1 5.6010 4.3297 3.4809 41 1 3.5053 5.2330 5.5315 42 1 5.2194 5.7339 5.4035 43 1 3.9641 7.9487 6.3443 44 1 5.6060 7.9604 5.6568 45 1 5.2802 13.6156 7.2783 46 1 4.0160 6.3217 1.8503 47 1 2.3747 6.2784 2.5523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567090384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:18 Heat of formation + Delta-G solvation = -57.447049 kcal Electronic energy + Delta-G solvation = -27032.928313 eV Core-core repulsion = 23148.968829 eV Total energy + Delta-G solvation = -3883.959484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97354 -39.76075 -37.61558 -36.76076 -35.47749 -33.19850 -32.41760 -30.85151 -29.62532 -29.33222 -27.85490 -26.20614 -25.43877 -24.01747 -23.15192 -22.22880 -20.93309 -19.61641 -19.29035 -17.71766 -17.38535 -17.14451 -16.60335 -16.41038 -15.81016 -15.35479 -14.83676 -14.79360 -14.69854 -14.53217 -14.17099 -13.96091 -13.91157 -13.82487 -13.36466 -13.23592 -12.79440 -12.71360 -12.60835 -12.46217 -12.36512 -12.34932 -12.00785 -11.77481 -11.69564 -11.53927 -11.32953 -11.05279 -11.00731 -10.93913 -10.74195 -10.17551 -9.80515 -9.43456 -9.15632 -9.05429 -8.86206 -8.48108 -8.22258 -6.49149 -6.20500 -3.91087 2.24708 2.54743 2.91071 3.07415 3.23495 3.27032 3.31555 3.58166 3.71746 3.83530 4.00819 4.21278 4.32523 4.44950 4.47846 4.52484 4.61785 4.73106 4.88901 4.91499 4.97036 4.99078 5.09072 5.14170 5.15031 5.20510 5.23573 5.26708 5.35952 5.41222 5.50188 5.62964 5.65562 5.68955 5.70077 5.87651 5.90015 6.00513 6.13416 6.16123 6.41306 6.53548 6.69862 6.90405 7.60881 7.67937 7.88153 8.36606 8.56516 9.24809 10.86964 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.001820 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.200593 B =15383.852743 C =15787.433218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.623 5.623 4 C 0.106 3.894 5 C -0.135 4.135 6 C 0.051 3.949 7 H 0.086 0.914 8 N -0.655 5.655 9 C 0.077 3.923 10 H 0.101 0.899 11 C -0.116 4.116 12 C 0.098 3.902 13 N -0.623 5.623 14 C 0.548 3.452 15 O -0.518 6.518 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.084 3.916 27 C 0.530 3.470 28 O -0.517 6.517 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.353 0.647 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -27.014 -17.755 32.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.359 5.359 4 C -0.017 4.017 5 C -0.174 4.174 6 C -0.063 4.063 7 H 0.104 0.896 8 N -0.288 5.288 9 C -0.034 4.034 10 H 0.119 0.881 11 C -0.154 4.154 12 C -0.025 4.025 13 N -0.361 5.361 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.041 4.041 27 C 0.316 3.684 28 O -0.391 6.391 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.174 0.826 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.930 -26.431 -18.103 32.581 hybrid contribution 0.488 0.088 1.624 1.698 sum -5.443 -26.344 -16.479 31.546 Atomic orbital electron populations 1.22171 0.95787 1.02428 1.02486 1.21334 0.94329 0.81022 1.03170 1.48266 1.66590 1.13790 1.07235 1.22031 0.99392 0.92707 0.87613 1.22836 1.01588 0.99095 0.93832 1.22232 0.94870 0.95715 0.93448 0.89610 1.60374 1.15087 1.48249 1.05086 1.22757 0.99941 0.90514 0.90142 0.88101 1.22743 0.99159 0.97892 0.95645 1.22376 1.00791 0.86175 0.93168 1.48415 1.65362 1.05238 1.17078 1.20066 0.77563 0.79803 0.88909 1.90700 1.48201 1.51513 1.48812 1.23506 1.03312 1.06898 0.95966 1.85381 1.83726 0.91897 1.22488 1.22865 1.48807 0.95146 1.01472 0.90897 1.24993 0.95211 0.94923 0.98453 1.70020 1.45003 0.98549 1.36735 0.86164 0.79117 0.77858 0.82341 1.20263 1.20751 1.19673 1.22615 0.99508 0.93666 0.88305 1.20685 0.76270 0.87115 0.84355 1.90703 1.52425 1.74912 1.21034 0.92178 0.92459 0.91371 0.90396 0.89972 0.90140 0.91009 0.88769 0.88746 0.82600 0.89384 0.90143 0.91216 0.90019 0.89234 0.89235 0.92198 0.91681 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.15 0.38 -0.53 16 2 C 0.12 0.72 6.65 -4.04 -0.03 0.69 16 3 N -0.62 -4.36 2.93 -172.42 -0.51 -4.87 16 4 C 0.11 0.41 7.35 -3.13 -0.02 0.39 16 5 C -0.14 -0.55 6.62 -25.10 -0.17 -0.72 16 6 C 0.05 0.37 3.10 -67.72 -0.21 0.16 16 7 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 8 N -0.66 -5.45 6.18 -97.84 -0.61 -6.06 16 9 C 0.08 0.77 2.95 -65.88 -0.19 0.58 16 10 H 0.10 1.14 7.19 -51.93 -0.37 0.77 16 11 C -0.12 -1.14 6.77 -24.58 -0.17 -1.31 16 12 C 0.10 1.15 6.69 -2.52 -0.02 1.13 16 13 N -0.62 -9.38 3.33 -170.52 -0.57 -9.95 16 14 C 0.55 10.92 7.87 -10.98 -0.09 10.83 16 15 O -0.52 -12.28 16.19 5.56 0.09 -12.19 16 16 C -0.15 -3.08 5.16 36.01 0.19 -2.90 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.08 1.04 6.59 -3.07 -0.02 1.02 16 27 C 0.53 5.26 7.62 -10.86 -0.08 5.18 16 28 O -0.52 -7.18 16.77 5.55 0.09 -7.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.35 2.47 7.79 -39.29 -0.31 2.16 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.92 7.47 -51.93 -0.39 0.53 16 43 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.09 1.75 7.85 -51.91 -0.41 1.34 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.06 0.78 7.51 -51.93 -0.39 0.39 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -37.51 398.22 -9.95 -47.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.72 Total: -1.75 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.23 Total: 1.42 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.94 Total: -46.50 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.51 -9.95 -47.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567090384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.992 kcal (2) G-P(sol) polarization free energy of solvation -37.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds