Wall clock time and date at job start Wed Apr 1 2020 00:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47016 * 2 1 4 4 C 1.46758 * 124.35033 * 269.94718 * 3 2 1 5 5 C 1.54474 * 105.47491 * 197.03824 * 4 3 2 6 6 C 1.54629 * 101.76449 * 334.58592 * 5 4 3 7 7 H 1.08997 * 110.60385 * 266.06359 * 6 5 4 8 8 N 1.46903 * 110.48773 * 143.47707 * 6 5 4 9 9 C 1.46897 * 111.00170 * 158.77176 * 8 6 5 10 10 H 1.08993 * 110.64061 * 31.86049 * 9 8 6 11 11 C 1.55157 * 110.71795 * 154.99744 * 9 8 6 12 12 C 1.54918 * 101.58155 * 154.04052 * 11 9 8 13 13 N 1.47425 * 104.82827 * 322.99497 * 12 11 9 14 14 C 1.34781 * 125.64420 * 204.16865 * 13 12 11 15 15 O 1.21281 * 119.99960 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99923 * 359.94683 * 14 13 12 17 17 S 1.81002 * 109.47071 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99892 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00128 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99625 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99678 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47183 * 90.00090 * 22 20 18 24 24 H 1.48498 * 109.46982 * 209.99929 * 22 20 18 25 25 H 1.48503 * 109.47213 * 330.00372 * 22 20 18 26 26 C 1.47015 * 108.70882 * 24.12597 * 13 12 11 27 27 C 1.34419 * 124.34713 * 89.97687 * 3 2 1 28 28 O 1.21283 * 124.94705 * 359.60307 * 27 3 2 29 29 H 1.09006 * 109.47663 * 299.99809 * 1 2 3 30 30 H 1.09003 * 109.47377 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47357 * 240.00045 * 2 1 3 33 33 H 1.09003 * 109.47377 * 119.99974 * 2 1 3 34 34 H 1.09000 * 110.24611 * 316.04649 * 4 3 2 35 35 H 1.09007 * 110.24307 * 77.95371 * 4 3 2 36 36 H 1.09001 * 110.97214 * 216.47096 * 5 4 3 37 37 H 1.08994 * 110.97249 * 92.70700 * 5 4 3 38 38 H 1.00897 * 111.00119 * 34.81403 * 8 6 5 39 39 H 1.09001 * 111.00846 * 272.11760 * 11 9 8 40 40 H 1.09000 * 111.00346 * 35.97292 * 11 9 8 41 41 H 1.08999 * 110.35942 * 81.82689 * 12 11 9 42 42 H 1.08996 * 110.36556 * 204.15522 * 12 11 9 43 43 H 1.08995 * 109.47462 * 299.99937 * 16 14 13 44 44 H 1.09009 * 109.46879 * 60.00324 * 16 14 13 45 45 H 0.97000 * 119.99587 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.88350 * 239.52260 * 26 13 12 47 47 H 1.08998 * 109.88602 * 118.35926 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2953 2.1616 -1.2116 5 6 3.1754 3.3436 -0.7484 6 6 2.7695 3.4753 0.7379 7 1 1.9753 4.2127 0.8547 8 7 3.9324 3.8399 1.5581 9 6 3.5116 4.4493 2.8268 10 1 2.5618 4.0299 3.1580 11 6 4.6029 4.2629 3.9138 12 6 4.3209 5.4667 4.8472 13 7 3.9328 6.5634 3.9417 14 6 4.0368 7.8796 4.2126 15 8 3.6857 8.6978 3.3891 16 6 4.5890 8.3347 5.5389 17 16 4.6019 10.1436 5.5985 18 6 5.2747 10.3920 7.2079 19 1 5.5375 9.5422 7.8204 20 6 5.4669 11.6799 7.6885 21 7 5.1462 12.7156 6.9422 22 14 6.1796 11.9432 9.3950 23 1 7.6599 12.0220 9.3066 24 1 5.6496 13.2088 9.9629 25 1 5.7959 10.8080 10.2723 26 6 3.4144 5.9837 2.6941 27 6 2.2706 2.0965 1.1098 28 8 2.1208 1.6946 2.2443 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.8335 1.5524 -1.9378 35 1 1.3649 2.5294 -1.6444 36 1 2.9322 4.2511 -1.3010 37 1 4.2341 3.1026 -0.8437 38 1 4.5545 4.4519 1.0517 39 1 4.4705 3.3190 4.4426 40 1 5.6010 4.3297 3.4809 41 1 3.5053 5.2330 5.5315 42 1 5.2194 5.7339 5.4035 43 1 3.9641 7.9487 6.3443 44 1 5.6060 7.9604 5.6568 45 1 5.2802 13.6156 7.2783 46 1 4.0160 6.3217 1.8503 47 1 2.3747 6.2784 2.5523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567090384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:17 Heat of formation + Delta-G solvation = -84.806318 kcal Electronic energy + Delta-G solvation = -27034.114700 eV Core-core repulsion = 23148.968829 eV Total energy + Delta-G solvation = -3885.145871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63564 -40.98548 -38.84520 -37.46755 -36.28635 -34.59813 -33.90733 -31.93539 -30.88622 -29.97905 -28.75761 -27.68976 -26.91201 -24.62417 -24.09655 -22.75338 -21.78189 -20.79927 -20.16137 -19.60674 -18.17333 -17.98456 -17.76438 -17.27183 -16.89334 -16.71536 -16.56414 -15.94384 -15.78422 -15.55256 -15.13046 -14.90346 -14.72721 -14.50130 -14.45485 -14.38267 -13.88625 -13.72098 -13.63795 -13.33777 -13.26283 -13.17209 -13.09716 -12.89395 -12.79975 -12.74502 -12.63108 -12.23552 -12.11491 -11.87590 -11.80292 -11.68051 -11.15129 -11.05151 -10.91010 -10.30638 -9.81683 -9.70095 -9.52514 -8.69473 -8.35724 -6.14577 1.21494 1.42216 1.43195 1.51049 1.54286 1.56940 2.01922 2.06369 2.26191 2.98410 3.01660 3.22422 3.32044 3.43524 3.57013 3.61321 3.86208 4.02441 4.05828 4.12012 4.15327 4.19619 4.26125 4.29325 4.33936 4.42360 4.44887 4.49404 4.57932 4.70364 4.72507 4.76986 4.83261 4.94148 4.97849 5.04262 5.07120 5.17763 5.25841 5.27827 5.40833 5.65341 5.80250 6.11867 6.18827 6.28624 6.33438 7.05131 7.05718 7.20956 8.73616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.001820 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.200593 B =15383.852743 C =15787.433218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.620 5.620 4 C 0.102 3.898 5 C -0.125 4.125 6 C 0.048 3.952 7 H 0.084 0.916 8 N -0.654 5.654 9 C 0.092 3.908 10 H 0.088 0.912 11 C -0.106 4.106 12 C 0.091 3.909 13 N -0.614 5.614 14 C 0.546 3.454 15 O -0.566 6.566 16 C -0.121 4.121 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.259 1.259 26 C 0.084 3.916 27 C 0.515 3.485 28 O -0.569 6.569 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.362 0.638 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -29.133 -18.364 34.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.354 5.354 4 C -0.020 4.020 5 C -0.163 4.163 6 C -0.065 4.065 7 H 0.102 0.898 8 N -0.287 5.287 9 C -0.019 4.019 10 H 0.106 0.894 11 C -0.144 4.144 12 C -0.031 4.031 13 N -0.349 5.349 14 C 0.335 3.665 15 O -0.445 6.445 16 C -0.272 4.272 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.041 4.041 27 C 0.302 3.698 28 O -0.448 6.448 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.185 0.815 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.010 -28.621 -18.769 34.591 hybrid contribution 0.141 0.574 1.695 1.795 sum -4.869 -28.047 -17.073 33.194 Atomic orbital electron populations 1.22116 0.95457 1.03121 1.01564 1.21472 0.94598 0.80662 1.03641 1.48455 1.65187 1.14160 1.07634 1.22310 1.00444 0.92606 0.86647 1.22879 1.02004 1.00191 0.91210 1.22299 0.94525 0.94233 0.95444 0.89792 1.60339 1.15659 1.47898 1.04851 1.22546 0.99550 0.88472 0.91320 0.89404 1.22701 0.99338 0.97261 0.95101 1.22674 1.01572 0.85582 0.93310 1.48349 1.63603 1.04319 1.18640 1.19804 0.77587 0.81125 0.88013 1.90678 1.50652 1.53261 1.49910 1.23311 1.04957 1.01397 0.97512 1.85546 1.84185 0.98930 1.23490 1.23197 1.48909 0.95925 1.01466 0.89923 1.26137 0.95312 0.94426 1.03208 1.70182 1.46252 0.99170 1.39096 0.84941 0.78449 0.78145 0.76364 1.19174 1.20218 1.18259 1.22810 0.98956 0.95129 0.87194 1.21195 0.76035 0.88251 0.84274 1.90662 1.54872 1.76147 1.23093 0.94986 0.91326 0.89959 0.87343 0.92028 0.87756 0.89521 0.86709 0.88119 0.81509 0.88485 0.89371 0.90169 0.89137 0.87704 0.87329 0.91940 0.91121 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 71.98 0.74 -0.86 16 2 C 0.12 1.22 6.65 86.38 0.57 1.79 16 3 N -0.62 -7.76 2.93 -818.00 -2.40 -10.16 16 4 C 0.10 0.48 7.35 86.83 0.64 1.12 16 5 C -0.12 -0.66 6.62 31.65 0.21 -0.45 16 6 C 0.05 0.65 3.10 44.91 0.14 0.79 16 7 H 0.08 1.17 7.92 -2.39 -0.02 1.15 16 8 N -0.65 -9.91 6.18 -463.46 -2.87 -12.78 16 9 C 0.09 1.76 2.95 46.10 0.14 1.89 16 10 H 0.09 1.97 7.19 -2.39 -0.02 1.96 16 11 C -0.11 -1.88 6.77 31.99 0.22 -1.66 16 12 C 0.09 1.95 6.69 86.86 0.58 2.54 16 13 N -0.61 -17.98 3.33 -811.79 -2.70 -20.68 16 14 C 0.55 21.84 7.87 87.66 0.69 22.53 16 15 O -0.57 -27.62 16.19 -3.03 -0.05 -27.66 16 16 C -0.12 -5.06 5.16 71.24 0.37 -4.69 16 17 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 18 C -0.55 -31.74 9.50 67.96 0.65 -31.09 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 22 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 C 0.08 2.00 6.59 86.73 0.57 2.58 16 27 C 0.52 10.03 7.62 87.90 0.67 10.70 16 28 O -0.57 -16.30 16.77 -3.04 -0.05 -16.35 16 29 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 34 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.10 0.45 8.08 -2.39 -0.02 0.43 16 38 H 0.36 4.31 7.79 -89.70 -0.70 3.61 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 1.83 7.47 -2.39 -0.02 1.81 16 43 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.11 4.11 7.85 -2.39 -0.02 4.09 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.07 1.64 7.51 -2.39 -0.02 1.62 16 47 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -85.33 398.22 0.00 -85.34 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.27 Total: 15.56 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.64 Total: 6.44 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -7.68 Total: -99.73 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -0.10 Total: -44.02 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -85.33 0.00 -85.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567090384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.530 kcal (2) G-P(sol) polarization free energy of solvation -85.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds