Wall clock time and date at job start Wed Apr 1 2020 00:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.34783 * 120.00002 * 89.99956 * 3 2 1 5 5 O 1.21276 * 119.99907 * 174.91987 * 4 3 2 6 6 C 1.50695 * 119.99959 * 354.92494 * 4 3 2 7 7 N 1.46902 * 109.47253 * 179.97438 * 6 4 3 8 8 C 1.47478 * 110.99986 * 265.96926 * 7 6 4 9 9 C 1.53510 * 87.93339 * 221.29588 * 8 7 6 10 10 N 1.46507 * 114.17054 * 272.38246 * 9 8 7 11 11 C 1.34781 * 119.99623 * 248.83888 * 10 9 8 12 12 O 1.21282 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99713 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47245 * 180.02562 * 13 11 10 15 15 C 1.76192 * 100.00236 * 180.02562 * 14 13 11 16 16 H 1.08007 * 120.00320 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99590 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47516 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47433 * 299.99552 * 19 17 15 23 23 C 1.47483 * 111.00016 * 169.99746 * 7 6 4 24 24 C 1.46504 * 120.00346 * 269.99958 * 3 2 1 25 25 C 1.53003 * 117.49255 * 13.48893 * 24 3 2 26 26 C 1.52996 * 117.49355 * 304.87025 * 24 3 2 27 27 H 1.09000 * 109.46886 * 299.99712 * 1 2 3 28 28 H 1.08996 * 109.47028 * 59.99642 * 1 2 3 29 29 H 1.08997 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47289 * 239.99701 * 2 1 3 31 31 H 1.09003 * 109.46678 * 120.00282 * 2 1 3 32 32 H 1.08999 * 109.47475 * 59.99752 * 6 4 3 33 33 H 1.08997 * 109.47194 * 299.99842 * 6 4 3 34 34 H 1.08995 * 113.47836 * 336.06769 * 8 7 6 35 35 H 1.09006 * 113.47302 * 106.52949 * 8 7 6 36 36 H 1.08999 * 114.17093 * 139.67264 * 9 8 7 37 37 H 0.96996 * 120.00060 * 68.83849 * 10 9 8 38 38 H 1.08999 * 109.47174 * 299.99852 * 13 11 10 39 39 H 1.08997 * 109.47168 * 60.00350 * 13 11 10 40 40 H 0.97003 * 120.00061 * 180.02562 * 18 17 15 41 41 H 1.08993 * 113.47495 * 253.47039 * 23 7 6 42 42 H 1.09002 * 113.47577 * 23.94385 * 23 7 6 43 43 H 1.08994 * 115.55290 * 159.19654 * 24 3 2 44 44 H 1.08996 * 117.50150 * 359.97438 * 25 24 3 45 45 H 1.08999 * 117.49579 * 145.02230 * 25 24 3 46 46 H 1.09004 * 117.50043 * 214.97673 * 26 24 3 47 47 H 1.08999 * 117.50495 * 359.97183 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.7338 3.1255 1.1693 6 6 1.8845 1.3488 2.4697 7 7 2.2253 2.2398 3.5869 8 6 3.5701 1.9383 4.1120 9 6 2.9999 2.1264 5.5248 10 7 3.0368 3.5093 6.0074 11 6 3.8658 3.8497 7.0141 12 8 4.5814 3.0114 7.5201 13 6 3.9041 5.2722 7.5101 14 16 5.1069 5.4097 8.8557 15 6 4.9489 7.1234 9.2334 16 1 4.2549 7.7371 8.6782 17 6 5.7171 7.6851 10.2438 18 7 6.5633 6.9374 10.9202 19 14 5.5491 9.5018 10.6447 20 1 4.1512 9.7913 11.0538 21 1 6.4716 9.8511 11.7547 22 1 5.8905 10.3072 9.4448 23 6 1.6761 1.7290 4.8568 24 6 2.2626 2.0718 -1.2687 25 6 1.7008 1.4328 -2.5403 26 6 3.2061 1.4001 -2.2684 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.4415 0.4169 2.5658 33 1 0.8155 1.1365 2.4870 34 1 3.8975 0.9189 3.9080 35 1 4.3184 2.6839 3.8429 36 1 3.3665 1.4039 6.2539 37 1 2.4647 4.1797 5.6024 38 1 4.1952 5.9337 6.6942 39 1 2.9170 5.5568 7.8742 40 1 7.1000 7.3298 11.6266 41 1 0.8193 2.2971 5.2189 42 1 1.4980 0.6537 4.8516 43 1 2.2770 3.1604 -1.2162 44 1 1.1500 0.4984 -2.4330 45 1 1.3455 2.1011 -3.3247 46 1 3.8412 2.0469 -2.8739 47 1 3.6456 0.4446 -1.9820 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567783889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:27 Heat of formation + Delta-G solvation = 7.212879 kcal Electronic energy + Delta-G solvation = -26651.353292 eV Core-core repulsion = 22770.197673 eV Total energy + Delta-G solvation = -3881.155619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08496 -40.08335 -38.50308 -37.55659 -34.95604 -33.68572 -32.38410 -30.87581 -30.65181 -28.75547 -26.23531 -25.54595 -25.20896 -24.17740 -22.89679 -22.17137 -20.85188 -19.80586 -19.33877 -17.91222 -17.81140 -17.12331 -16.50823 -16.30296 -16.00470 -15.71338 -15.01576 -14.86453 -14.76592 -14.65065 -14.43322 -14.26974 -13.96413 -13.53089 -13.30647 -13.16733 -13.03571 -12.96853 -12.52969 -12.30275 -12.14736 -12.03124 -11.92551 -11.66862 -11.44458 -11.40280 -11.03757 -11.00091 -10.99628 -10.96851 -10.72309 -10.10040 -9.77976 -9.40050 -9.18029 -9.01864 -8.91647 -8.82998 -8.19529 -6.45157 -6.17278 -3.87403 2.27065 2.34698 3.02789 3.08178 3.27480 3.30583 3.33839 3.38777 3.60901 3.80426 4.05972 4.21856 4.24994 4.27992 4.33791 4.41740 4.46322 4.52841 4.59108 4.69866 4.78390 4.81814 5.01235 5.07572 5.11028 5.14600 5.17485 5.17863 5.19650 5.35644 5.36983 5.48199 5.55698 5.56140 5.62776 5.67694 5.86959 5.95122 5.96324 6.10794 6.21866 6.53255 6.71839 6.96790 7.64095 7.79138 7.89251 8.39767 8.65016 9.28031 10.90113 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.001766 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.391266 B =15851.420500 C =16525.968864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.593 5.593 4 C 0.520 3.480 5 O -0.507 6.507 6 C 0.001 3.999 7 N -0.449 5.449 8 C -0.017 4.017 9 C 0.127 3.873 10 N -0.711 5.711 11 C 0.536 3.464 12 O -0.519 6.519 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.012 4.012 24 C 0.085 3.915 25 C -0.189 4.189 26 C -0.194 4.194 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.406 0.594 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.925 -17.953 -26.337 35.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.327 5.327 4 C 0.307 3.693 5 O -0.379 6.379 6 C -0.131 4.131 7 N -0.171 5.171 8 C -0.147 4.147 9 C 0.019 3.981 10 N -0.365 5.365 11 C 0.323 3.677 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.142 4.142 24 C -0.019 4.019 25 C -0.227 4.227 26 C -0.232 4.232 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.241 0.759 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.152 0.848 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.496 -18.066 -25.560 34.086 hybrid contribution -1.139 1.373 -0.660 1.902 sum -14.635 -16.693 -26.220 34.356 Atomic orbital electron populations 1.22282 0.95435 1.02535 1.03042 1.21591 0.94845 0.82422 1.03413 1.47499 1.66564 1.13913 1.04768 1.20486 0.78102 0.86194 0.84492 1.90739 1.41083 1.19427 1.86674 1.22698 1.03124 0.95602 0.91650 1.68872 1.05905 1.41795 1.00574 1.24533 0.93584 1.01457 0.95100 1.21770 0.95369 0.86144 0.94832 1.45559 1.44185 1.09577 1.37149 1.20352 0.78680 0.90423 0.78284 1.90690 1.40480 1.51499 1.56663 1.23527 1.06667 0.94793 1.05375 1.85350 1.48263 1.12672 1.37045 1.22841 1.28158 0.94440 1.22912 0.90941 1.24987 0.94495 0.99010 0.95091 1.70010 1.23056 1.35936 1.21362 0.86224 0.78174 0.83026 0.78076 1.19954 1.20847 1.19932 1.24342 0.99322 1.00243 0.90274 1.21589 1.03474 0.96936 0.79939 1.23415 0.96804 1.03401 0.99035 1.23392 0.92988 1.03381 1.03480 0.92156 0.91819 0.91255 0.90114 0.90166 0.90745 0.87851 0.90564 0.88715 0.86863 0.75944 0.89039 0.89117 0.92175 0.88682 0.90020 0.84844 0.88194 0.87883 0.87975 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.06 37.16 0.37 -0.21 16 2 C 0.10 0.41 5.15 -4.04 -0.02 0.39 16 3 N -0.59 -4.45 2.82 -166.11 -0.47 -4.92 16 4 C 0.52 5.40 7.73 -10.98 -0.08 5.32 16 5 O -0.51 -7.67 16.12 5.56 0.09 -7.58 16 6 C 0.00 0.01 3.97 -4.98 -0.02 -0.01 16 7 N -0.45 -4.60 5.82 -246.10 -1.43 -6.03 16 8 C -0.02 -0.18 7.52 -7.55 -0.06 -0.24 16 9 C 0.13 1.49 4.59 -67.71 -0.31 1.17 16 10 N -0.71 -10.11 5.39 -53.54 -0.29 -10.40 16 11 C 0.54 10.22 7.85 -10.99 -0.09 10.14 16 12 O -0.52 -11.79 15.46 5.56 0.09 -11.71 16 13 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.52 9.50 30.94 0.29 -15.23 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 19 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.01 -0.10 7.45 -7.54 -0.06 -0.16 16 24 C 0.09 0.64 6.26 -67.93 -0.43 0.21 16 25 C -0.19 -0.91 9.51 -26.73 -0.25 -1.16 16 26 C -0.19 -1.13 10.02 -26.73 -0.27 -1.40 16 27 H 0.06 0.24 6.94 -51.93 -0.36 -0.12 16 28 H 0.06 0.25 7.21 -51.93 -0.37 -0.13 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.26 6.25 -51.93 -0.32 -0.07 16 31 H 0.08 0.24 6.48 -51.93 -0.34 -0.10 16 32 H 0.07 0.42 6.41 -51.93 -0.33 0.09 16 33 H 0.10 0.59 6.87 -51.93 -0.36 0.24 16 34 H 0.08 0.67 7.42 -51.93 -0.39 0.29 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.11 1.43 7.46 -51.93 -0.39 1.04 16 37 H 0.41 5.08 8.76 -40.82 -0.36 4.72 16 38 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.48 7.91 -51.93 -0.41 0.06 16 43 H 0.13 1.23 7.62 -51.93 -0.40 0.83 16 44 H 0.10 0.38 5.85 -51.93 -0.30 0.08 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.53 7.83 -51.93 -0.41 0.12 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -37.44 397.64 -10.55 -47.99 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.24 Total: 1.63 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.79 Total: -2.11 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -1.46 Total: -47.11 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.44 -10.55 -47.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.202 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds