Wall clock time and date at job start Wed Apr 1 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.34783 * 120.00002 * 89.99956 * 3 2 1 5 5 O 1.21276 * 119.99907 * 174.91987 * 4 3 2 6 6 C 1.50695 * 119.99959 * 354.92494 * 4 3 2 7 7 N 1.46902 * 109.47253 * 179.97438 * 6 4 3 8 8 C 1.47478 * 110.99986 * 265.96926 * 7 6 4 9 9 C 1.53510 * 87.93339 * 221.29588 * 8 7 6 10 10 N 1.46507 * 114.17054 * 272.38246 * 9 8 7 11 11 C 1.34781 * 119.99623 * 248.83888 * 10 9 8 12 12 O 1.21282 * 119.99903 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99713 * 179.97438 * 11 10 9 14 14 S 1.81003 * 109.47245 * 180.02562 * 13 11 10 15 15 C 1.76192 * 100.00236 * 180.02562 * 14 13 11 16 16 H 1.08007 * 120.00320 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00172 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99590 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47516 * 59.99782 * 19 17 15 21 21 H 1.48501 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47433 * 299.99552 * 19 17 15 23 23 C 1.47483 * 111.00016 * 169.99746 * 7 6 4 24 24 C 1.46504 * 120.00346 * 269.99958 * 3 2 1 25 25 C 1.53003 * 117.49255 * 13.48893 * 24 3 2 26 26 C 1.52996 * 117.49355 * 304.87025 * 24 3 2 27 27 H 1.09000 * 109.46886 * 299.99712 * 1 2 3 28 28 H 1.08996 * 109.47028 * 59.99642 * 1 2 3 29 29 H 1.08997 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47289 * 239.99701 * 2 1 3 31 31 H 1.09003 * 109.46678 * 120.00282 * 2 1 3 32 32 H 1.08999 * 109.47475 * 59.99752 * 6 4 3 33 33 H 1.08997 * 109.47194 * 299.99842 * 6 4 3 34 34 H 1.08995 * 113.47836 * 336.06769 * 8 7 6 35 35 H 1.09006 * 113.47302 * 106.52949 * 8 7 6 36 36 H 1.08999 * 114.17093 * 139.67264 * 9 8 7 37 37 H 0.96996 * 120.00060 * 68.83849 * 10 9 8 38 38 H 1.08999 * 109.47174 * 299.99852 * 13 11 10 39 39 H 1.08997 * 109.47168 * 60.00350 * 13 11 10 40 40 H 0.97003 * 120.00061 * 180.02562 * 18 17 15 41 41 H 1.08993 * 113.47495 * 253.47039 * 23 7 6 42 42 H 1.09002 * 113.47577 * 23.94385 * 23 7 6 43 43 H 1.08994 * 115.55290 * 159.19654 * 24 3 2 44 44 H 1.08996 * 117.50150 * 359.97438 * 25 24 3 45 45 H 1.08999 * 117.49579 * 145.02230 * 25 24 3 46 46 H 1.09004 * 117.50043 * 214.97673 * 26 24 3 47 47 H 1.08999 * 117.50495 * 359.97183 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.7338 3.1255 1.1693 6 6 1.8845 1.3488 2.4697 7 7 2.2253 2.2398 3.5869 8 6 3.5701 1.9383 4.1120 9 6 2.9999 2.1264 5.5248 10 7 3.0368 3.5093 6.0074 11 6 3.8658 3.8497 7.0141 12 8 4.5814 3.0114 7.5201 13 6 3.9041 5.2722 7.5101 14 16 5.1069 5.4097 8.8557 15 6 4.9489 7.1234 9.2334 16 1 4.2549 7.7371 8.6782 17 6 5.7171 7.6851 10.2438 18 7 6.5633 6.9374 10.9202 19 14 5.5491 9.5018 10.6447 20 1 4.1512 9.7913 11.0538 21 1 6.4716 9.8511 11.7547 22 1 5.8905 10.3072 9.4448 23 6 1.6761 1.7290 4.8568 24 6 2.2626 2.0718 -1.2687 25 6 1.7008 1.4328 -2.5403 26 6 3.2061 1.4001 -2.2684 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.4415 0.4169 2.5658 33 1 0.8155 1.1365 2.4870 34 1 3.8975 0.9189 3.9080 35 1 4.3184 2.6839 3.8429 36 1 3.3665 1.4039 6.2539 37 1 2.4647 4.1797 5.6024 38 1 4.1952 5.9337 6.6942 39 1 2.9170 5.5568 7.8742 40 1 7.1000 7.3298 11.6266 41 1 0.8193 2.2971 5.2189 42 1 1.4980 0.6537 4.8516 43 1 2.2770 3.1604 -1.2162 44 1 1.1500 0.4984 -2.4330 45 1 1.3455 2.1011 -3.3247 46 1 3.8412 2.0469 -2.8739 47 1 3.6456 0.4446 -1.9820 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567783889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:26 Heat of formation + Delta-G solvation = -21.889342 kcal Electronic energy + Delta-G solvation = -26652.615259 eV Core-core repulsion = 22770.197673 eV Total energy + Delta-G solvation = -3882.417586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89721 -40.89410 -39.79916 -38.26391 -35.49842 -34.91329 -34.57982 -31.81915 -31.20162 -30.10841 -27.67446 -27.00051 -26.12926 -24.52586 -23.33074 -22.79286 -22.16473 -20.81801 -19.96703 -19.78436 -18.51516 -18.10542 -17.51740 -17.31226 -16.87803 -16.82611 -16.66138 -16.23671 -16.03040 -15.59146 -15.31190 -15.10565 -14.71210 -14.66084 -14.48926 -13.99112 -13.92648 -13.87183 -13.62201 -13.44156 -13.16975 -12.88305 -12.85002 -12.65016 -12.53733 -12.40775 -12.35755 -12.03853 -11.93665 -11.83357 -11.71950 -11.50485 -11.12959 -11.02365 -10.83315 -10.29243 -10.10337 -9.84304 -9.47809 -8.66324 -8.34466 -6.12407 1.26123 1.43862 1.45751 1.55963 1.56757 1.57348 1.80121 2.22775 2.28391 2.91073 2.97069 2.99300 3.31690 3.40360 3.57003 3.72481 3.78169 3.94423 3.95913 3.98173 4.00575 4.03645 4.24906 4.29225 4.31288 4.39715 4.44686 4.50826 4.54636 4.62649 4.69750 4.73007 4.79382 4.83925 4.92666 4.98341 5.02968 5.15336 5.19192 5.38704 5.41724 5.51237 5.59181 5.88136 6.19798 6.38832 6.49916 7.06553 7.20829 7.22440 8.74530 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.001766 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.391266 B =15851.420500 C =16525.968864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 N -0.586 5.586 4 C 0.510 3.490 5 O -0.571 6.571 6 C 0.005 3.995 7 N -0.474 5.474 8 C -0.011 4.011 9 C 0.108 3.892 10 N -0.691 5.691 11 C 0.539 3.461 12 O -0.562 6.562 13 C -0.131 4.131 14 S -0.145 6.145 15 C -0.550 4.550 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.910 5.910 19 Si 0.998 3.002 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.264 1.264 23 C 0.010 3.990 24 C 0.053 3.947 25 C -0.163 4.163 26 C -0.192 4.192 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.416 0.584 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.272 0.728 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 -19.247 -27.961 38.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.299 3.701 5 O -0.448 6.448 6 C -0.126 4.126 7 N -0.197 5.197 8 C -0.141 4.141 9 C 0.001 3.999 10 N -0.343 5.343 11 C 0.325 3.675 12 O -0.440 6.440 13 C -0.282 4.282 14 S 0.082 5.918 15 C -0.697 4.697 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.546 5.546 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.118 4.118 24 C -0.052 4.052 25 C -0.200 4.200 26 C -0.230 4.230 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.252 0.748 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.070 -19.414 -27.256 37.122 hybrid contribution -0.423 1.669 -0.338 1.755 sum -16.494 -17.746 -27.594 36.720 Atomic orbital electron populations 1.22248 0.94556 1.03632 1.02443 1.21900 0.95516 0.80424 1.04972 1.47585 1.65287 1.14998 1.03960 1.21091 0.77296 0.85649 0.86064 1.90709 1.44292 1.22205 1.87633 1.22781 1.05025 0.95610 0.89196 1.68804 1.05219 1.43599 1.02070 1.24462 0.93549 1.01811 0.94296 1.22037 0.98712 0.84120 0.94987 1.45340 1.42408 1.11319 1.35226 1.20013 0.79087 0.89205 0.79157 1.90675 1.42584 1.52228 1.58540 1.23373 1.05183 0.96741 1.02939 1.85475 1.51857 1.13521 1.40910 1.23184 1.28572 0.94588 1.23401 0.90096 1.26122 0.93793 1.04502 0.94671 1.70171 1.24061 1.38365 1.22029 0.85007 0.78742 0.76133 0.78130 1.18598 1.20188 1.18885 1.24310 0.97103 1.02457 0.87969 1.21570 1.06398 0.96046 0.81155 1.23476 0.95990 1.03616 0.96928 1.23428 0.93802 1.03271 1.02513 0.92664 0.92578 0.89234 0.88825 0.88420 0.87914 0.85208 0.87969 0.92340 0.87724 0.74761 0.87857 0.87094 0.91945 0.87994 0.86281 0.87759 0.86479 0.87103 0.88095 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.06 71.98 0.72 0.15 16 2 C 0.09 0.47 5.15 86.38 0.44 0.91 16 3 N -0.59 -8.05 2.82 -797.85 -2.25 -10.30 16 4 C 0.51 10.25 7.73 87.65 0.68 10.93 16 5 O -0.57 -18.04 16.12 -3.02 -0.05 -18.08 16 6 C 0.00 0.06 3.97 85.55 0.34 0.40 16 7 N -0.47 -8.81 5.82 -932.52 -5.43 -14.23 16 8 C -0.01 -0.23 7.52 83.58 0.63 0.40 16 9 C 0.11 2.41 4.59 45.45 0.21 2.62 16 10 N -0.69 -19.27 5.39 -441.68 -2.38 -21.65 16 11 C 0.54 20.81 7.85 87.65 0.69 21.50 16 12 O -0.56 -26.35 15.46 -3.04 -0.05 -26.39 16 13 C -0.13 -5.50 6.16 71.23 0.44 -5.06 16 14 S -0.14 -8.26 20.57 -56.49 -1.16 -9.42 16 15 C -0.55 -32.29 9.50 67.96 0.65 -31.64 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.81 5.49 84.86 0.47 1.28 16 18 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 19 Si 1.00 44.65 29.55 68.60 2.03 46.68 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 C 0.01 0.14 7.45 83.58 0.62 0.76 16 24 C 0.05 0.79 6.26 44.99 0.28 1.07 16 25 C -0.16 -1.28 9.51 30.60 0.29 -0.99 16 26 C -0.19 -2.06 10.02 30.59 0.31 -1.75 16 27 H 0.05 0.26 6.94 -2.39 -0.02 0.24 16 28 H 0.06 0.29 7.21 -2.39 -0.02 0.27 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 30 H 0.09 0.26 6.25 -2.39 -0.01 0.25 16 31 H 0.10 0.17 6.48 -2.39 -0.02 0.16 16 32 H 0.10 0.73 6.41 -2.39 -0.02 0.71 16 33 H 0.13 0.96 6.87 -2.39 -0.02 0.94 16 34 H 0.10 1.58 7.42 -2.39 -0.02 1.56 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 2.56 7.46 -2.39 -0.02 2.54 16 37 H 0.42 9.98 8.76 -92.71 -0.81 9.17 16 38 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.11 4.18 8.14 -2.40 -0.02 4.16 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.12 0.78 7.91 -2.39 -0.02 0.76 16 43 H 0.10 2.14 7.62 -2.39 -0.02 2.12 16 44 H 0.12 0.53 5.85 -2.39 -0.01 0.51 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.10 0.96 7.83 -2.39 -0.02 0.94 16 Total: -1.00 -87.08 397.64 -2.06 -89.14 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.18 Total: 20.15 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.76 Total: 0.59 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -9.77 Total: -102.65 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.10 Total: -44.48 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -87.08 -2.06 -89.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.250 kcal (2) G-P(sol) polarization free energy of solvation -87.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds