Wall clock time and date at job start Wed Apr 1 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47337 * 2 1 4 4 C 1.46496 * 119.99970 * 89.99549 * 3 2 1 5 5 C 1.53002 * 109.47237 * 270.00680 * 4 3 2 6 6 N 1.46906 * 109.47053 * 180.02562 * 5 4 3 7 7 C 1.46895 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47030 * 179.97438 * 7 6 5 9 9 N 1.34476 * 126.16891 * 269.69672 * 8 7 6 10 10 C 1.30249 * 108.70140 * 179.82241 * 9 8 7 11 11 C 1.50704 * 125.62006 * 180.18446 * 10 9 8 12 12 O 1.33966 * 108.76609 * 0.43549 * 10 9 8 13 13 C 1.34333 * 126.16626 * 89.99688 * 8 7 6 14 14 C 1.50704 * 126.44131 * 359.97438 * 13 8 7 15 15 C 1.34771 * 119.99789 * 270.00452 * 3 2 1 16 16 O 1.21285 * 119.99914 * 179.97438 * 15 3 2 17 17 C 1.50706 * 120.00395 * 359.97438 * 15 3 2 18 18 S 1.81001 * 109.47179 * 180.02562 * 17 15 3 19 19 C 1.76197 * 99.99854 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00227 * 180.02562 * 19 18 17 22 22 N 1.31639 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00338 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47389 * 119.99880 * 23 21 19 26 26 H 1.48500 * 109.47462 * 239.99793 * 23 21 19 27 27 H 1.08994 * 109.47069 * 299.99930 * 1 2 3 28 28 H 1.09000 * 109.46920 * 60.00123 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47402 * 240.00455 * 2 1 3 31 31 H 1.08996 * 109.47389 * 119.99740 * 2 1 3 32 32 H 1.09001 * 109.47059 * 150.00623 * 4 3 2 33 33 H 1.09004 * 109.47074 * 30.00579 * 4 3 2 34 34 H 1.08992 * 109.47056 * 59.99825 * 5 4 3 35 35 H 1.09004 * 109.47006 * 299.99941 * 5 4 3 36 36 H 1.00899 * 110.99484 * 303.95475 * 6 5 4 37 37 H 1.08996 * 109.47424 * 299.99656 * 7 6 5 38 38 H 1.09002 * 109.47411 * 60.00282 * 7 6 5 39 39 H 1.08998 * 109.47429 * 180.31603 * 11 10 9 40 40 H 1.09000 * 109.47071 * 300.31688 * 11 10 9 41 41 H 1.09008 * 109.46736 * 60.31292 * 11 10 9 42 42 H 1.09002 * 109.46899 * 89.99732 * 14 13 8 43 43 H 1.08996 * 109.46962 * 209.99615 * 14 13 8 44 44 H 1.08997 * 109.47102 * 330.00345 * 14 13 8 45 45 H 1.08998 * 109.46786 * 300.00563 * 17 15 3 46 46 H 1.08999 * 109.46534 * 60.00763 * 17 15 3 47 47 H 0.97002 * 119.99605 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9874 2.7930 1.7104 6 7 1.2324 3.4861 2.9823 7 6 0.0273 4.1918 3.4379 8 6 0.3162 4.8886 4.7425 9 7 0.1492 4.3713 5.9725 10 6 0.5059 5.2628 6.8525 11 6 0.4758 5.0808 8.3482 12 8 0.8989 6.3702 6.2092 13 6 0.7818 6.1404 4.8866 14 6 1.1117 7.1059 3.7775 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1602 -1.1672 17 6 1.9922 1.3060 -2.4724 18 16 2.3848 2.4148 -3.8481 19 6 2.0111 1.3589 -5.2082 20 1 1.6560 0.3545 -5.0305 21 6 2.1741 1.8174 -6.5080 22 7 2.6074 3.0414 -6.7247 23 14 1.7787 0.6978 -7.9500 24 1 1.3135 -0.6178 -7.4422 25 1 0.7113 1.3149 -8.7778 26 1 2.9974 0.5059 -8.7766 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7986 1.1384 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0664 1.8407 35 1 0.6993 3.5197 0.9507 36 1 1.5634 2.8434 3.6862 37 1 -0.2673 4.9279 2.6899 38 1 -0.7814 3.4751 3.5805 39 1 0.8242 5.9931 8.8324 40 1 -0.5441 4.8666 8.6677 41 1 1.1255 4.2509 8.6264 42 1 0.2274 7.6945 3.5331 43 1 1.9126 7.7708 4.1009 44 1 1.4336 6.5509 2.8964 45 1 2.6226 0.4187 -2.5299 46 1 0.9443 1.0116 -2.5302 47 1 2.7217 3.3618 -7.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568726758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:55 Heat of formation + Delta-G solvation = -18.232837 kcal Electronic energy + Delta-G solvation = -26571.312198 eV Core-core repulsion = 22689.053169 eV Total energy + Delta-G solvation = -3882.259028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.61115 -39.63344 -37.05881 -35.77192 -34.76609 -33.49451 -32.42396 -31.22651 -30.44171 -29.83901 -28.42678 -26.12712 -25.44835 -24.30191 -23.30501 -22.29388 -21.90657 -20.86782 -19.10643 -17.69678 -17.17176 -16.91891 -16.78592 -16.20181 -15.73539 -15.36404 -14.80336 -14.72116 -14.56212 -14.44841 -13.90832 -13.82586 -13.74511 -13.71531 -13.34466 -13.18282 -13.08521 -13.03168 -12.82886 -12.59661 -12.48906 -12.26179 -12.13475 -11.76590 -11.68238 -11.36916 -11.32338 -11.07186 -11.00615 -10.88429 -10.76417 -10.72029 -9.78869 -9.34127 -9.06948 -8.84565 -8.67959 -8.52964 -8.20871 -6.49106 -6.21376 -3.91611 1.16421 2.28826 2.38628 2.91599 3.07859 3.21495 3.25879 3.30975 3.57296 3.66766 4.20310 4.22260 4.45564 4.50901 4.73827 4.78497 4.91794 4.93985 4.95036 5.00202 5.12243 5.13734 5.14621 5.19770 5.22942 5.25921 5.31174 5.39628 5.41849 5.49355 5.55434 5.68369 5.76562 5.77948 5.83454 5.89159 5.94034 5.99803 6.03640 6.07716 6.23351 6.60540 6.77802 7.10444 7.47954 7.56077 7.60461 8.35794 8.58774 9.24123 10.86077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.001865 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.645230 B =15013.566804 C =15846.103421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.620 5.620 4 C 0.122 3.878 5 C 0.044 3.956 6 N -0.681 5.681 7 C 0.145 3.855 8 C -0.016 4.016 9 N -0.478 5.478 10 C 0.180 3.820 11 C -0.054 4.054 12 O -0.204 6.204 13 C -0.022 4.022 14 C -0.072 4.072 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.342 0.658 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 0.130 27.906 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.002 4.002 5 C -0.086 4.086 6 N -0.313 5.313 7 C 0.016 3.984 8 C -0.136 4.136 9 N -0.208 5.208 10 C -0.027 4.027 11 C -0.111 4.111 12 O -0.091 6.091 13 C -0.076 4.076 14 C -0.128 4.128 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.160 0.840 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.853 1.956 27.632 28.123 hybrid contribution -1.153 -2.232 -0.718 2.613 sum -6.006 -0.276 26.914 27.578 Atomic orbital electron populations 1.22307 0.96106 1.02188 1.02699 1.21555 0.94414 0.82508 1.03201 1.47958 1.67907 1.14166 1.05553 1.21244 0.97608 0.96597 0.84724 1.22454 0.97448 0.97188 0.91539 1.60365 1.31451 1.33780 1.05682 1.20078 0.91596 0.97130 0.89617 1.21265 1.05721 0.92846 0.93755 1.70269 1.19988 1.31268 0.99294 1.26135 0.98622 0.80444 0.97490 1.20213 1.04838 1.04246 0.81826 1.84392 1.66186 1.39910 1.18624 1.23284 1.04147 0.98175 0.81946 1.20376 1.02761 0.96862 0.92836 1.20345 0.76415 0.86537 0.84573 1.90705 1.43667 1.17382 1.86762 1.23585 1.04709 1.04505 0.97288 1.85395 1.86826 1.17952 0.93359 1.22901 1.51600 1.01515 0.92227 0.90920 1.24990 0.94693 0.95537 0.98371 1.70034 1.43046 1.15648 1.21529 0.86127 0.78173 0.80091 0.81162 1.19627 1.20581 1.20572 0.92485 0.91868 0.91648 0.89866 0.90716 0.88925 0.91202 0.94776 0.90065 0.83985 0.89161 0.93450 0.89494 0.88681 0.88611 0.89871 0.90307 0.87864 0.89346 0.89282 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.24 37.16 0.38 -1.35 16 2 C 0.11 1.13 5.98 -4.04 -0.02 1.11 16 3 N -0.62 -8.59 2.47 -173.68 -0.43 -9.02 16 4 C 0.12 1.48 5.71 -4.04 -0.02 1.45 16 5 C 0.04 0.49 6.01 -3.82 -0.02 0.47 16 6 N -0.68 -7.20 6.49 -115.06 -0.75 -7.94 16 7 C 0.15 1.49 5.84 -4.98 -0.03 1.46 16 8 C -0.02 -0.18 6.62 -82.81 -0.55 -0.73 16 9 N -0.48 -5.58 11.29 -7.36 -0.08 -5.66 16 10 C 0.18 1.75 8.34 -12.95 -0.11 1.64 16 11 C -0.05 -0.26 10.51 36.01 0.38 0.12 16 12 O -0.20 -2.18 10.78 5.37 0.06 -2.13 16 13 C -0.02 -0.23 7.39 -35.68 -0.26 -0.49 16 14 C -0.07 -0.57 10.05 36.01 0.36 -0.21 16 15 C 0.53 10.05 7.69 -10.99 -0.08 9.96 16 16 O -0.51 -11.58 15.44 5.55 0.09 -11.50 16 17 C -0.15 -3.04 4.71 36.01 0.17 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H 0.06 0.54 6.26 -51.93 -0.33 0.21 16 28 H 0.06 0.74 7.22 -51.93 -0.38 0.37 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 31 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 32 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 34 H 0.03 0.36 6.26 -51.93 -0.33 0.03 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.34 3.43 8.72 -39.29 -0.34 3.09 16 37 H 0.09 0.87 7.79 -51.93 -0.40 0.47 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.87 7.80 -51.93 -0.40 0.46 16 45 H 0.09 1.67 7.40 -51.92 -0.38 1.28 16 46 H 0.09 1.68 7.19 -51.92 -0.37 1.31 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -35.88 404.76 -8.53 -44.42 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.40 Total: 0.99 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 0.38 Total: -2.32 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.53 Total: -48.02 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.14 Total: -13.62 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.88 -8.53 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568726758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.184 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds