Wall clock time and date at job start Wed Apr 1 2020 01:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47337 * 2 1 4 4 C 1.46496 * 119.99970 * 89.99549 * 3 2 1 5 5 C 1.53002 * 109.47237 * 270.00680 * 4 3 2 6 6 N 1.46906 * 109.47053 * 180.02562 * 5 4 3 7 7 C 1.46895 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47030 * 179.97438 * 7 6 5 9 9 N 1.34476 * 126.16891 * 269.69672 * 8 7 6 10 10 C 1.30249 * 108.70140 * 179.82241 * 9 8 7 11 11 C 1.50704 * 125.62006 * 180.18446 * 10 9 8 12 12 O 1.33966 * 108.76609 * 0.43549 * 10 9 8 13 13 C 1.34333 * 126.16626 * 89.99688 * 8 7 6 14 14 C 1.50704 * 126.44131 * 359.97438 * 13 8 7 15 15 C 1.34771 * 119.99789 * 270.00452 * 3 2 1 16 16 O 1.21285 * 119.99914 * 179.97438 * 15 3 2 17 17 C 1.50706 * 120.00395 * 359.97438 * 15 3 2 18 18 S 1.81001 * 109.47179 * 180.02562 * 17 15 3 19 19 C 1.76197 * 99.99854 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00227 * 180.02562 * 19 18 17 22 22 N 1.31639 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00338 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47215 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47389 * 119.99880 * 23 21 19 26 26 H 1.48500 * 109.47462 * 239.99793 * 23 21 19 27 27 H 1.08994 * 109.47069 * 299.99930 * 1 2 3 28 28 H 1.09000 * 109.46920 * 60.00123 * 1 2 3 29 29 H 1.09003 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47402 * 240.00455 * 2 1 3 31 31 H 1.08996 * 109.47389 * 119.99740 * 2 1 3 32 32 H 1.09001 * 109.47059 * 150.00623 * 4 3 2 33 33 H 1.09004 * 109.47074 * 30.00579 * 4 3 2 34 34 H 1.08992 * 109.47056 * 59.99825 * 5 4 3 35 35 H 1.09004 * 109.47006 * 299.99941 * 5 4 3 36 36 H 1.00899 * 110.99484 * 303.95475 * 6 5 4 37 37 H 1.08996 * 109.47424 * 299.99656 * 7 6 5 38 38 H 1.09002 * 109.47411 * 60.00282 * 7 6 5 39 39 H 1.08998 * 109.47429 * 180.31603 * 11 10 9 40 40 H 1.09000 * 109.47071 * 300.31688 * 11 10 9 41 41 H 1.09008 * 109.46736 * 60.31292 * 11 10 9 42 42 H 1.09002 * 109.46899 * 89.99732 * 14 13 8 43 43 H 1.08996 * 109.46962 * 209.99615 * 14 13 8 44 44 H 1.08997 * 109.47102 * 330.00345 * 14 13 8 45 45 H 1.08998 * 109.46786 * 300.00563 * 17 15 3 46 46 H 1.08999 * 109.46534 * 60.00763 * 17 15 3 47 47 H 0.97002 * 119.99605 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9874 2.7930 1.7104 6 7 1.2324 3.4861 2.9823 7 6 0.0273 4.1918 3.4379 8 6 0.3162 4.8886 4.7425 9 7 0.1492 4.3713 5.9725 10 6 0.5059 5.2628 6.8525 11 6 0.4758 5.0808 8.3482 12 8 0.8989 6.3702 6.2092 13 6 0.7818 6.1404 4.8866 14 6 1.1117 7.1059 3.7775 15 6 2.2429 2.0165 -1.1672 16 8 2.6468 3.1602 -1.1672 17 6 1.9922 1.3060 -2.4724 18 16 2.3848 2.4148 -3.8481 19 6 2.0111 1.3589 -5.2082 20 1 1.6560 0.3545 -5.0305 21 6 2.1741 1.8174 -6.5080 22 7 2.6074 3.0414 -6.7247 23 14 1.7787 0.6978 -7.9500 24 1 1.3135 -0.6178 -7.4422 25 1 0.7113 1.3149 -8.7778 26 1 2.9974 0.5059 -8.7766 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.0644 2.7986 1.1384 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0664 1.8407 35 1 0.6993 3.5197 0.9507 36 1 1.5634 2.8434 3.6862 37 1 -0.2673 4.9279 2.6899 38 1 -0.7814 3.4751 3.5805 39 1 0.8242 5.9931 8.8324 40 1 -0.5441 4.8666 8.6677 41 1 1.1255 4.2509 8.6264 42 1 0.2274 7.6945 3.5331 43 1 1.9126 7.7708 4.1009 44 1 1.4336 6.5509 2.8964 45 1 2.6226 0.4187 -2.5299 46 1 0.9443 1.0116 -2.5302 47 1 2.7217 3.3618 -7.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568726758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:54 Heat of formation + Delta-G solvation = -45.223476 kcal Electronic energy + Delta-G solvation = -26572.482599 eV Core-core repulsion = 22689.053169 eV Total energy + Delta-G solvation = -3883.429430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.37204 -40.97725 -38.05972 -36.92242 -35.59708 -34.58071 -34.21454 -32.21318 -31.14908 -30.96211 -29.54871 -27.70082 -26.92539 -25.07505 -24.33503 -23.26208 -22.66991 -21.64627 -20.54698 -19.50357 -18.20351 -17.93726 -17.72948 -17.24413 -16.88310 -16.80518 -16.58347 -15.97704 -15.58671 -15.32884 -15.10389 -14.82754 -14.79862 -14.51634 -14.40373 -14.26388 -14.07228 -13.83070 -13.60111 -13.54457 -13.41181 -13.19304 -13.14208 -13.02399 -12.93221 -12.86750 -12.59766 -12.57902 -12.28006 -12.14916 -11.81158 -11.66499 -11.55078 -11.15330 -10.87033 -10.25303 -9.79453 -9.62836 -9.43058 -8.66295 -8.34369 -6.12355 0.41114 1.25890 1.41409 1.44377 1.50984 1.58350 1.59987 1.70722 2.09192 2.27715 2.97508 2.99808 3.25475 3.37710 3.66949 3.70525 3.78948 3.99999 4.04977 4.14959 4.20956 4.22938 4.34178 4.40296 4.40929 4.47183 4.49201 4.60125 4.60863 4.62480 4.64339 4.78314 4.81844 4.85026 4.91609 4.97767 5.03482 5.06788 5.17147 5.34710 5.36462 5.42362 5.58240 5.84127 6.20287 6.25802 6.31847 6.71322 7.07006 7.16742 8.75099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.001865 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.645230 B =15013.566804 C =15846.103421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.123 3.877 5 C 0.057 3.943 6 N -0.683 5.683 7 C 0.151 3.849 8 C -0.033 4.033 9 N -0.506 5.506 10 C 0.180 3.820 11 C -0.054 4.054 12 O -0.213 6.213 13 C -0.034 4.034 14 C -0.069 4.069 15 C 0.532 3.468 16 O -0.560 6.560 17 C -0.123 4.123 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.348 0.652 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -2.280 29.546 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.000 4.000 5 C -0.073 4.073 6 N -0.315 5.315 7 C 0.021 3.979 8 C -0.152 4.152 9 N -0.237 5.237 10 C -0.027 4.027 11 C -0.111 4.111 12 O -0.101 6.101 13 C -0.088 4.088 14 C -0.125 4.125 15 C 0.320 3.680 16 O -0.438 6.438 17 C -0.274 4.274 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.722 -0.500 29.318 29.875 hybrid contribution -0.905 -1.516 -1.025 2.042 sum -6.627 -2.017 28.293 29.128 Atomic orbital electron populations 1.22265 0.95271 1.03488 1.01833 1.21908 0.95058 0.80388 1.05027 1.47933 1.66074 1.15271 1.04522 1.21361 0.97183 0.97049 0.84440 1.22222 0.97349 0.96623 0.91121 1.60296 1.31832 1.33898 1.05486 1.20021 0.91316 0.97054 0.89467 1.21413 1.06407 0.93348 0.94011 1.70267 1.21441 1.32250 0.99729 1.27170 0.96810 0.79637 0.99065 1.20499 1.06114 1.05721 0.78717 1.84407 1.66465 1.40485 1.18734 1.23679 1.04133 0.98550 0.82431 1.20419 1.03726 0.96596 0.91778 1.20134 0.76462 0.85942 0.85506 1.90690 1.46306 1.19382 1.87450 1.23401 1.05814 1.03081 0.95142 1.85575 1.87590 1.22040 0.97256 1.23225 1.51611 1.01755 0.92666 0.89963 1.26123 0.94180 0.97159 1.01665 1.70197 1.44290 1.17881 1.22394 0.84911 0.78093 0.78202 0.76778 1.17974 1.19947 1.19930 0.91879 0.94206 0.89264 0.89938 0.87073 0.91573 0.87451 0.93228 0.93014 0.83344 0.89132 0.93397 0.87624 0.87297 0.87327 0.88426 0.89371 0.88684 0.87572 0.87712 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.24 71.98 0.74 -2.14 16 2 C 0.10 1.77 5.98 86.38 0.52 2.29 16 3 N -0.60 -15.89 2.47 -821.80 -2.03 -17.92 16 4 C 0.12 2.81 5.71 86.38 0.49 3.30 16 5 C 0.06 1.25 6.01 86.30 0.52 1.77 16 6 N -0.68 -14.06 6.49 -517.93 -3.36 -17.42 16 7 C 0.15 3.07 5.84 85.56 0.50 3.57 16 8 C -0.03 -0.73 6.62 41.26 0.27 -0.46 16 9 N -0.51 -11.51 11.29 -291.98 -3.30 -14.81 16 10 C 0.18 3.33 8.34 88.34 0.74 4.07 16 11 C -0.05 -0.40 10.51 71.24 0.75 0.34 16 12 O -0.21 -4.44 10.78 -3.71 -0.04 -4.48 16 13 C -0.03 -0.72 7.39 24.79 0.18 -0.54 16 14 C -0.07 -1.09 10.05 71.24 0.72 -0.37 16 15 C 0.53 20.18 7.69 87.66 0.67 20.86 16 16 O -0.56 -26.44 15.44 -3.05 -0.05 -26.49 16 17 C -0.12 -4.99 4.71 71.24 0.34 -4.65 16 18 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 19 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.77 5.49 84.85 0.47 1.23 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 23 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H 0.06 1.00 6.26 -2.39 -0.01 0.98 16 28 H 0.04 0.86 7.22 -2.39 -0.02 0.85 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.55 6.44 -2.39 -0.02 1.54 16 31 H 0.11 1.30 7.89 -2.39 -0.02 1.28 16 32 H 0.07 1.93 7.42 -2.39 -0.02 1.91 16 33 H 0.11 1.70 7.89 -2.38 -0.02 1.68 16 34 H 0.05 0.94 6.26 -2.39 -0.01 0.93 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.35 6.53 8.72 -89.69 -0.78 5.75 16 37 H 0.09 1.80 7.79 -2.39 -0.02 1.78 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.66 7.80 -2.39 -0.02 1.64 16 45 H 0.11 3.89 7.40 -2.40 -0.02 3.88 16 46 H 0.10 3.89 7.19 -2.40 -0.02 3.87 16 47 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.53 404.76 0.12 -81.42 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.20 Total: 20.91 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 7.54 Total: -1.32 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -8.40 Total: -106.03 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.09 Total: -30.97 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -81.53 0.12 -81.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568726758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.195 kcal (2) G-P(sol) polarization free energy of solvation -81.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds