Wall clock time and date at job start Wed Apr 1 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46827 * 2 1 4 4 C 1.46498 * 119.99545 * 90.00115 * 3 2 1 5 5 C 1.52994 * 109.47398 * 269.99812 * 4 3 2 6 6 N 1.46902 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46873 * 179.97438 * 7 6 5 9 9 O 1.34754 * 126.44374 * 270.01930 * 8 7 6 10 10 C 1.33964 * 107.75570 * 179.74137 * 9 8 7 11 11 C 1.50701 * 125.61941 * 179.97438 * 10 9 8 12 12 N 1.30258 * 108.76191 * 359.97438 * 10 9 8 13 13 C 1.34331 * 126.44432 * 89.71000 * 8 7 6 14 14 C 1.50699 * 126.16313 * 0.24342 * 13 8 7 15 15 C 1.34774 * 119.99815 * 269.99966 * 3 2 1 16 16 O 1.21284 * 119.99602 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00182 * 0.02562 * 15 3 2 18 18 S 1.80998 * 109.47017 * 179.97438 * 17 15 3 19 19 C 1.76194 * 100.00023 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47231 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47251 * 120.00022 * 23 21 19 26 26 H 1.48496 * 109.47441 * 240.00072 * 23 21 19 27 27 H 1.08994 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47070 * 299.99612 * 1 2 3 29 29 H 1.08996 * 109.47516 * 59.99569 * 1 2 3 30 30 H 1.08992 * 109.46974 * 240.00403 * 2 1 3 31 31 H 1.08992 * 109.47249 * 119.99734 * 2 1 3 32 32 H 1.09003 * 109.46543 * 149.99955 * 4 3 2 33 33 H 1.09000 * 109.47295 * 30.00556 * 4 3 2 34 34 H 1.08999 * 109.47141 * 60.00025 * 5 4 3 35 35 H 1.09005 * 109.46905 * 299.99969 * 5 4 3 36 36 H 1.00895 * 111.00246 * 56.04430 * 6 5 4 37 37 H 1.08995 * 109.47141 * 59.99408 * 7 6 5 38 38 H 1.09002 * 109.46801 * 299.99434 * 7 6 5 39 39 H 1.09004 * 109.46932 * 89.99806 * 11 10 9 40 40 H 1.08994 * 109.47103 * 209.99773 * 11 10 9 41 41 H 1.09002 * 109.47223 * 330.00368 * 11 10 9 42 42 H 1.08997 * 109.47862 * 90.00111 * 14 13 8 43 43 H 1.09010 * 109.47022 * 210.00055 * 14 13 8 44 44 H 1.08995 * 109.47218 * 329.99265 * 14 13 8 45 45 H 1.09001 * 109.46558 * 299.99407 * 17 15 3 46 46 H 1.08998 * 109.47172 * 59.99999 * 17 15 3 47 47 H 0.97000 * 119.99808 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 0.9875 2.7930 1.7105 6 7 1.2325 3.4859 2.9825 7 6 0.0270 4.1907 3.4388 8 6 0.3161 4.8874 4.7434 9 8 0.1575 4.3720 5.9784 10 6 0.5299 5.3072 6.8623 11 6 0.5129 5.1543 8.3614 12 7 0.9091 6.3705 6.2125 13 6 0.7858 6.1368 4.8939 14 6 1.1159 7.1024 3.7849 15 6 2.2429 2.0166 -1.1672 16 8 2.6467 3.1603 -1.1672 17 6 1.9912 1.3064 -2.4723 18 16 2.3827 2.4156 -3.8480 19 6 2.0095 1.3595 -5.2081 20 1 1.6552 0.3548 -5.0305 21 6 2.1709 1.8188 -6.5080 22 7 2.6032 3.0431 -6.7246 23 14 1.7760 0.6989 -7.9500 24 1 1.3119 -0.6171 -7.4422 25 1 0.7072 1.3148 -8.7769 26 1 2.9944 0.5090 -8.7775 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.0643 2.7985 1.1384 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0664 1.8408 35 1 0.6994 3.5198 0.9509 36 1 2.0143 4.1190 2.9046 37 1 -0.7811 3.4734 3.5815 38 1 -0.2683 4.9268 2.6911 39 1 1.4714 4.7584 8.6971 40 1 0.3391 6.1259 8.8238 41 1 -0.2840 4.4678 8.6476 42 1 0.2329 7.6940 3.5433 43 1 1.9198 7.7644 4.1069 44 1 1.4340 6.5472 2.9026 45 1 2.6212 0.4188 -2.5302 46 1 0.9432 1.0126 -2.5299 47 1 2.7163 3.3638 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568726931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:50 Heat of formation + Delta-G solvation = -18.511288 kcal Electronic energy + Delta-G solvation = -26594.918102 eV Core-core repulsion = 22712.646999 eV Total energy + Delta-G solvation = -3882.271103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61560 -39.70176 -37.04971 -35.72601 -35.37259 -33.27403 -32.45006 -31.39526 -30.00703 -29.63411 -28.78544 -26.65057 -25.48913 -23.99088 -23.33094 -22.39252 -22.00430 -20.87730 -19.18019 -17.73124 -17.17171 -17.14827 -16.75146 -16.15483 -15.92958 -15.32750 -14.89377 -14.82645 -14.65231 -14.42712 -13.92920 -13.76746 -13.62831 -13.59262 -13.44798 -13.36981 -13.23008 -13.12132 -13.00669 -12.65964 -12.56031 -12.20941 -12.16877 -11.83335 -11.79579 -11.39806 -11.15757 -11.09275 -11.03378 -10.88452 -10.76405 -10.73991 -9.81617 -9.41862 -9.09438 -9.00735 -8.80544 -8.58841 -8.24527 -6.52464 -6.23969 -3.94542 1.10052 2.29908 2.36645 2.85953 3.01258 3.19739 3.23658 3.29109 3.53943 3.66339 4.02499 4.18166 4.39756 4.50816 4.66673 4.70422 4.88772 4.90616 4.92389 4.94722 5.05007 5.06847 5.11287 5.15751 5.20481 5.30814 5.30941 5.39590 5.39913 5.44034 5.51770 5.64277 5.71743 5.73064 5.76458 5.80447 5.90317 5.90895 6.03966 6.07287 6.20070 6.44060 6.67210 6.94425 7.46396 7.50031 7.57902 8.33240 8.51701 9.21599 10.83508 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.001866 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.294940 B =15000.691086 C =15822.434696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.619 5.619 4 C 0.121 3.879 5 C 0.042 3.958 6 N -0.684 5.684 7 C 0.145 3.855 8 C -0.042 4.042 9 O -0.193 6.193 10 C 0.189 3.811 11 C -0.056 4.056 12 N -0.483 5.483 13 C -0.004 4.004 14 C -0.074 4.074 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.347 0.653 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -1.330 26.843 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.355 5.355 4 C -0.002 4.002 5 C -0.088 4.088 6 N -0.317 5.317 7 C 0.016 3.984 8 C -0.096 4.096 9 O -0.080 6.080 10 C -0.018 4.018 11 C -0.113 4.113 12 N -0.214 5.214 13 C -0.125 4.125 14 C -0.132 4.132 15 C 0.322 3.678 16 O -0.390 6.390 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.165 0.835 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.430 0.429 27.376 27.913 hybrid contribution -1.069 -1.969 -1.808 2.879 sum -6.499 -1.540 25.568 26.426 Atomic orbital electron populations 1.22302 0.96062 1.02280 1.02653 1.21568 0.94451 0.82329 1.03318 1.47964 1.67834 1.14277 1.05420 1.21234 0.96785 0.97305 0.84904 1.22468 0.99353 0.98033 0.88945 1.60431 1.06272 1.33902 1.31097 1.20209 0.94095 0.96804 0.87260 1.22957 1.07167 0.94301 0.85151 1.84385 1.65820 1.42313 1.15471 1.26235 0.97726 0.82737 0.95103 1.20250 1.04552 1.05032 0.81503 1.70355 1.20217 1.26528 1.04269 1.21577 1.03565 0.94916 0.92460 1.20157 1.02650 0.97042 0.93322 1.20373 0.76278 0.86496 0.84652 1.90690 1.43950 1.17505 1.86846 1.23582 1.04764 1.04534 0.97215 1.85387 1.86905 1.17920 0.93408 1.22898 1.51712 1.01474 0.92185 0.90890 1.24994 0.94660 0.95541 0.98387 1.70028 1.43022 1.15639 1.21568 0.86122 0.78188 0.80086 0.81132 1.19606 1.20573 1.20548 0.91563 0.92400 0.91934 0.89872 0.90491 0.89915 0.89992 0.90405 0.93878 0.83487 0.89000 0.91262 0.88874 0.88176 0.89358 0.90555 0.90273 0.90761 0.89271 0.89223 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.11 1.09 5.98 -4.04 -0.02 1.07 16 3 N -0.62 -8.27 2.47 -173.69 -0.43 -8.70 16 4 C 0.12 1.40 5.71 -4.05 -0.02 1.38 16 5 C 0.04 0.44 6.01 -3.83 -0.02 0.42 16 6 N -0.68 -6.64 6.49 -115.05 -0.75 -7.38 16 7 C 0.15 1.32 5.84 -4.97 -0.03 1.29 16 8 C -0.04 -0.45 6.90 -35.69 -0.25 -0.70 16 9 O -0.19 -2.15 10.78 5.36 0.06 -2.09 16 10 C 0.19 1.88 8.34 -12.95 -0.11 1.77 16 11 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 12 N -0.48 -5.74 11.29 -7.36 -0.08 -5.82 16 13 C 0.00 -0.05 7.11 -82.81 -0.59 -0.64 16 14 C -0.07 -0.65 10.05 36.01 0.36 -0.29 16 15 C 0.53 9.80 7.69 -10.99 -0.08 9.71 16 16 O -0.52 -11.36 15.44 5.55 0.09 -11.27 16 17 C -0.15 -2.99 4.71 36.01 0.17 -2.82 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 6.26 -51.92 -0.33 0.18 16 29 H 0.06 0.71 7.22 -51.93 -0.37 0.33 16 30 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 31 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 32 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 33 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.08 0.76 6.26 -51.93 -0.33 0.44 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.35 3.36 8.72 -39.29 -0.34 3.02 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 45 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 46 H 0.09 1.66 7.18 -51.92 -0.37 1.28 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -35.81 404.75 -8.56 -44.37 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.40 Total: 0.50 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 0.36 Total: -2.77 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.53 Total: -47.14 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.14 Total: -13.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.81 -8.56 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568726931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds