Wall clock time and date at job start Wed Apr 1 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46827 * 2 1 4 4 C 1.46498 * 119.99545 * 90.00115 * 3 2 1 5 5 C 1.52994 * 109.47398 * 269.99812 * 4 3 2 6 6 N 1.46902 * 109.47089 * 180.02562 * 5 4 3 7 7 C 1.46907 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46873 * 179.97438 * 7 6 5 9 9 O 1.34754 * 126.44374 * 270.01930 * 8 7 6 10 10 C 1.33964 * 107.75570 * 179.74137 * 9 8 7 11 11 C 1.50701 * 125.61941 * 179.97438 * 10 9 8 12 12 N 1.30258 * 108.76191 * 359.97438 * 10 9 8 13 13 C 1.34331 * 126.44432 * 89.71000 * 8 7 6 14 14 C 1.50699 * 126.16313 * 0.24342 * 13 8 7 15 15 C 1.34774 * 119.99815 * 269.99966 * 3 2 1 16 16 O 1.21284 * 119.99602 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00182 * 0.02562 * 15 3 2 18 18 S 1.80998 * 109.47017 * 179.97438 * 17 15 3 19 19 C 1.76194 * 100.00023 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47231 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47251 * 120.00022 * 23 21 19 26 26 H 1.48496 * 109.47441 * 240.00072 * 23 21 19 27 27 H 1.08994 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47070 * 299.99612 * 1 2 3 29 29 H 1.08996 * 109.47516 * 59.99569 * 1 2 3 30 30 H 1.08992 * 109.46974 * 240.00403 * 2 1 3 31 31 H 1.08992 * 109.47249 * 119.99734 * 2 1 3 32 32 H 1.09003 * 109.46543 * 149.99955 * 4 3 2 33 33 H 1.09000 * 109.47295 * 30.00556 * 4 3 2 34 34 H 1.08999 * 109.47141 * 60.00025 * 5 4 3 35 35 H 1.09005 * 109.46905 * 299.99969 * 5 4 3 36 36 H 1.00895 * 111.00246 * 56.04430 * 6 5 4 37 37 H 1.08995 * 109.47141 * 59.99408 * 7 6 5 38 38 H 1.09002 * 109.46801 * 299.99434 * 7 6 5 39 39 H 1.09004 * 109.46932 * 89.99806 * 11 10 9 40 40 H 1.08994 * 109.47103 * 209.99773 * 11 10 9 41 41 H 1.09002 * 109.47223 * 330.00368 * 11 10 9 42 42 H 1.08997 * 109.47862 * 90.00111 * 14 13 8 43 43 H 1.09010 * 109.47022 * 210.00055 * 14 13 8 44 44 H 1.08995 * 109.47218 * 329.99265 * 14 13 8 45 45 H 1.09001 * 109.46558 * 299.99407 * 17 15 3 46 46 H 1.08998 * 109.47172 * 59.99999 * 17 15 3 47 47 H 0.97000 * 119.99808 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 0.9875 2.7930 1.7105 6 7 1.2325 3.4859 2.9825 7 6 0.0270 4.1907 3.4388 8 6 0.3161 4.8874 4.7434 9 8 0.1575 4.3720 5.9784 10 6 0.5299 5.3072 6.8623 11 6 0.5129 5.1543 8.3614 12 7 0.9091 6.3705 6.2125 13 6 0.7858 6.1368 4.8939 14 6 1.1159 7.1024 3.7849 15 6 2.2429 2.0166 -1.1672 16 8 2.6467 3.1603 -1.1672 17 6 1.9912 1.3064 -2.4723 18 16 2.3827 2.4156 -3.8480 19 6 2.0095 1.3595 -5.2081 20 1 1.6552 0.3548 -5.0305 21 6 2.1709 1.8188 -6.5080 22 7 2.6032 3.0431 -6.7246 23 14 1.7760 0.6989 -7.9500 24 1 1.3119 -0.6171 -7.4422 25 1 0.7072 1.3148 -8.7769 26 1 2.9944 0.5090 -8.7775 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.0643 2.7985 1.1384 33 1 2.5506 1.3452 2.0284 34 1 0.1856 2.0664 1.8408 35 1 0.6994 3.5198 0.9509 36 1 2.0143 4.1190 2.9046 37 1 -0.7811 3.4734 3.5815 38 1 -0.2683 4.9268 2.6911 39 1 1.4714 4.7584 8.6971 40 1 0.3391 6.1259 8.8238 41 1 -0.2840 4.4678 8.6476 42 1 0.2329 7.6940 3.5433 43 1 1.9198 7.7644 4.1069 44 1 1.4340 6.5472 2.9026 45 1 2.6212 0.4188 -2.5302 46 1 0.9432 1.0126 -2.5299 47 1 2.7163 3.3638 -7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568726931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:50 Heat of formation + Delta-G solvation = -45.303544 kcal Electronic energy + Delta-G solvation = -26596.079902 eV Core-core repulsion = 22712.646999 eV Total energy + Delta-G solvation = -3883.432902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.38530 -40.99846 -38.00806 -36.82021 -36.17719 -34.58867 -34.00549 -32.27652 -31.15819 -30.38049 -29.78563 -27.80797 -27.39722 -24.75181 -24.31784 -23.28310 -22.76770 -21.63958 -20.57309 -19.51554 -18.26620 -17.94025 -17.83556 -17.26099 -16.88746 -16.86573 -16.38242 -15.98180 -15.85629 -15.28936 -15.20222 -14.82155 -14.61987 -14.47014 -14.37901 -14.28346 -14.05280 -14.04418 -13.82717 -13.50582 -13.46701 -13.35002 -13.18745 -12.94278 -12.89736 -12.85023 -12.64825 -12.59351 -12.26991 -11.93559 -11.78873 -11.64795 -11.55241 -11.16044 -10.89611 -10.26412 -9.82402 -9.79926 -9.49305 -8.67228 -8.35237 -6.13181 0.33553 1.25501 1.40960 1.45021 1.52518 1.57224 1.57833 1.65804 2.07776 2.27024 2.99121 3.02438 3.16806 3.27785 3.64842 3.70899 3.77767 3.92553 4.03173 4.11492 4.16546 4.21095 4.28412 4.40545 4.45470 4.47684 4.48921 4.61277 4.61963 4.62776 4.65135 4.72305 4.76886 4.82649 4.88380 4.98082 5.01687 5.04829 5.13411 5.37803 5.38611 5.41763 5.53000 5.75125 6.11466 6.19536 6.28018 6.69623 7.06317 7.14163 8.74195 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.001866 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.294940 B =15000.691086 C =15822.434696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.121 3.879 5 C 0.054 3.946 6 N -0.681 5.681 7 C 0.149 3.851 8 C -0.053 4.053 9 O -0.204 6.204 10 C 0.190 3.810 11 C -0.056 4.056 12 N -0.517 5.517 13 C -0.020 4.020 14 C -0.073 4.073 15 C 0.533 3.467 16 O -0.563 6.563 17 C -0.124 4.124 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.017 0.983 36 H 0.345 0.655 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -4.044 28.324 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.337 5.337 4 C -0.002 4.002 5 C -0.075 4.075 6 N -0.314 5.314 7 C 0.020 3.980 8 C -0.106 4.106 9 O -0.092 6.092 10 C -0.017 4.017 11 C -0.113 4.113 12 N -0.248 5.248 13 C -0.140 4.140 14 C -0.130 4.130 15 C 0.320 3.680 16 O -0.441 6.441 17 C -0.275 4.275 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.036 0.964 36 H 0.163 0.837 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.526 -2.321 28.904 29.722 hybrid contribution -0.743 -1.154 -2.060 2.475 sum -7.269 -3.474 26.844 28.027 Atomic orbital electron populations 1.22262 0.95115 1.03561 1.01924 1.21915 0.95195 0.80288 1.04994 1.47939 1.65986 1.15329 1.04426 1.21379 0.96757 0.97697 0.84343 1.22299 0.99040 0.97647 0.88557 1.60445 1.06576 1.34092 1.30245 1.20234 0.93895 0.97086 0.86753 1.23142 1.07587 0.94370 0.85528 1.84388 1.66175 1.42826 1.15797 1.27261 0.95839 0.81939 0.96639 1.20542 1.06155 1.06316 0.78280 1.70373 1.21831 1.27772 1.04838 1.21931 1.03671 0.95593 0.92806 1.20193 1.02964 0.96867 0.92961 1.20132 0.76393 0.85919 0.85534 1.90675 1.46517 1.19421 1.87505 1.23402 1.05866 1.03089 0.95130 1.85557 1.87665 1.21996 0.97294 1.23226 1.51651 1.01726 0.92650 0.89940 1.26120 0.94173 0.97145 1.01671 1.70190 1.44311 1.17864 1.22404 0.84916 0.78086 0.78229 0.76790 1.17941 1.19968 1.19952 0.89285 0.91566 0.94220 0.90037 0.87058 0.91930 0.87022 0.88931 0.96431 0.83664 0.88061 0.90698 0.87315 0.87149 0.87358 0.89727 0.90421 0.90275 0.87580 0.87646 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 71.98 0.74 -1.95 16 2 C 0.10 1.69 5.98 86.38 0.52 2.20 16 3 N -0.60 -15.15 2.47 -821.82 -2.03 -17.18 16 4 C 0.12 2.60 5.71 86.38 0.49 3.10 16 5 C 0.05 1.07 6.01 86.30 0.52 1.59 16 6 N -0.68 -12.47 6.49 -517.92 -3.36 -15.83 16 7 C 0.15 2.57 5.84 85.55 0.50 3.06 16 8 C -0.05 -1.11 6.90 24.79 0.17 -0.94 16 9 O -0.20 -4.37 10.78 -3.73 -0.04 -4.41 16 10 C 0.19 3.62 8.34 88.34 0.74 4.35 16 11 C -0.06 -0.45 10.51 71.24 0.75 0.30 16 12 N -0.52 -12.20 11.29 -291.98 -3.30 -15.50 16 13 C -0.02 -0.44 7.11 41.26 0.29 -0.15 16 14 C -0.07 -1.29 10.05 71.24 0.72 -0.57 16 15 C 0.53 19.55 7.69 87.66 0.67 20.23 16 16 O -0.56 -25.67 15.44 -3.04 -0.05 -25.72 16 17 C -0.12 -4.90 4.71 71.24 0.34 -4.57 16 18 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 19 C -0.54 -30.94 9.50 67.96 0.65 -30.30 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.80 13.22 21.65 0.29 -55.52 16 23 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.94 6.26 -2.38 -0.01 0.93 16 29 H 0.04 0.81 7.22 -2.39 -0.02 0.80 16 30 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 31 H 0.11 1.25 7.89 -2.39 -0.02 1.24 16 32 H 0.06 1.64 7.42 -2.39 -0.02 1.62 16 33 H 0.11 1.79 7.89 -2.39 -0.02 1.77 16 34 H 0.09 1.57 6.26 -2.39 -0.01 1.55 16 35 H 0.02 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.35 6.59 8.72 -89.70 -0.78 5.81 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.21 7.80 -2.39 -0.02 1.19 16 39 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.08 1.29 7.79 -2.39 -0.02 1.27 16 45 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 46 H 0.11 3.82 7.18 -2.40 -0.02 3.80 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -80.88 404.75 0.12 -80.75 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.20 Total: 20.06 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 7.55 Total: -2.40 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -8.40 Total: -104.03 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.09 Total: -30.13 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -80.88 0.12 -80.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568726931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.449 kcal (2) G-P(sol) polarization free energy of solvation -80.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds