Wall clock time and date at job start Wed Apr 1 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48538 * 110.99951 * 2 1 4 4 C 1.54941 * 103.22580 * 159.71912 * 3 2 1 5 5 C 1.54594 * 102.92302 * 322.58423 * 4 3 2 6 6 C 1.47903 * 110.99832 * 117.39391 * 2 1 3 7 7 H 1.09006 * 110.08252 * 333.60042 * 6 2 1 8 8 C 1.50699 * 109.91954 * 94.80419 * 6 2 1 9 9 O 1.21280 * 119.99565 * 17.59141 * 8 6 2 10 10 N 1.34769 * 120.00430 * 197.59121 * 8 6 2 11 11 C 1.47026 * 125.64648 * 359.95279 * 10 8 6 12 12 C 1.54324 * 107.27134 * 181.09757 * 11 10 8 13 13 C 1.55151 * 102.94303 * 22.19452 * 12 11 10 14 14 H 1.09006 * 111.03721 * 82.58642 * 13 12 11 15 15 N 1.46503 * 111.00704 * 206.42414 * 13 12 11 16 16 C 1.34781 * 119.99634 * 267.19781 * 15 13 12 17 17 O 1.21274 * 120.00344 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99423 * 179.97438 * 16 15 13 19 19 S 1.81001 * 109.46896 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99894 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46807 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.46906 * 300.00462 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47421 * 125.65412 * 180.02562 * 10 8 6 29 29 H 1.08998 * 109.47503 * 302.60929 * 1 2 3 30 30 H 1.09005 * 109.47419 * 62.60673 * 1 2 3 31 31 H 1.09004 * 109.47148 * 182.60764 * 1 2 3 32 32 H 1.09002 * 110.66612 * 41.28675 * 3 2 1 33 33 H 1.08997 * 110.66546 * 278.15488 * 3 2 1 34 34 H 1.09001 * 110.71858 * 204.22557 * 4 3 2 35 35 H 1.08998 * 110.72173 * 80.94574 * 4 3 2 36 36 H 1.09003 * 110.30911 * 263.04847 * 5 4 3 37 37 H 1.08998 * 110.31200 * 140.87520 * 5 4 3 38 38 H 1.08998 * 109.88813 * 300.51634 * 11 10 8 39 39 H 1.09002 * 109.88075 * 61.52932 * 11 10 8 40 40 H 1.09000 * 110.72182 * 263.83375 * 12 11 10 41 41 H 1.08999 * 110.72412 * 140.56368 * 12 11 10 42 42 H 0.96994 * 119.99836 * 87.19901 * 15 13 12 43 43 H 1.09001 * 109.47454 * 60.00304 * 18 16 15 44 44 H 1.09003 * 109.47322 * 299.99933 * 18 16 15 45 45 H 0.97001 * 119.99662 * 179.97438 * 23 22 20 46 46 H 1.09004 * 110.36444 * 36.99006 * 28 10 8 47 47 H 1.08996 * 110.45926 * 274.72491 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5931 6 6 1.9989 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0898 0.9642 9 8 2.3970 -2.4920 -0.1753 10 7 2.4426 -2.9436 1.9962 11 6 2.3445 -2.5918 3.4204 12 6 2.6124 -3.8782 4.2297 13 6 3.4041 -4.7601 3.2284 14 1 4.4613 -4.4945 3.2240 15 7 3.2244 -6.1833 3.5262 16 6 4.1029 -6.8206 4.3253 17 8 5.0423 -6.2162 4.7976 18 6 3.9178 -8.2845 4.6320 19 16 5.2485 -8.8452 5.7233 20 6 4.7968 -10.5378 5.9118 21 1 3.9176 -10.9207 5.4151 22 6 5.5709 -11.3792 6.6989 23 7 6.6422 -10.9124 7.3048 24 14 5.0916 -13.1735 6.8994 25 1 6.0740 -13.8526 7.7820 26 1 3.7386 -13.2597 7.5053 27 1 5.0816 -13.8347 5.5698 28 6 2.7322 -4.3848 1.8843 29 1 -0.3634 0.5538 0.8656 30 1 -0.3634 0.4728 -0.9125 31 1 -0.3634 -1.0266 0.0468 32 1 1.4237 2.0205 0.6729 33 1 2.0040 1.7977 -1.0095 34 1 3.8122 2.1353 0.9716 35 1 4.1115 0.8836 -0.2787 36 1 3.2134 0.5487 2.5854 37 1 4.1469 -0.5774 1.5542 38 1 3.0901 -1.8362 3.6678 39 1 1.3463 -2.2135 3.6409 40 1 1.6755 -4.3594 4.5103 41 1 3.2145 -3.6606 5.1118 42 1 2.4734 -6.6668 3.1481 43 1 3.9430 -8.8561 3.7043 44 1 2.9570 -8.4338 5.1248 45 1 7.1830 -11.5004 7.8551 46 1 3.4136 -4.5714 1.0543 47 1 1.8095 -4.9496 1.7509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577886156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:52 Heat of formation + Delta-G solvation = -55.867651 kcal Electronic energy + Delta-G solvation = -26989.497907 eV Core-core repulsion = 23105.606911 eV Total energy + Delta-G solvation = -3883.890996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83249 -39.59770 -38.49960 -37.18715 -34.21552 -32.68169 -32.44758 -31.35327 -30.06592 -29.52116 -27.86085 -26.13704 -25.50322 -24.07371 -22.13061 -21.69652 -21.37298 -20.51730 -19.38706 -17.97250 -17.68730 -16.95389 -16.39541 -16.27241 -16.20918 -15.23017 -14.96864 -14.81977 -14.77820 -14.57080 -14.17646 -14.14163 -13.89883 -13.73112 -13.30876 -13.27026 -12.86751 -12.75256 -12.62066 -12.45548 -12.38667 -12.04838 -11.95352 -11.81843 -11.63592 -11.52404 -11.26162 -11.10787 -11.06195 -11.04954 -10.78784 -10.02905 -9.85017 -9.50353 -9.09992 -9.04832 -8.94216 -8.86787 -8.27573 -6.52847 -6.23612 -3.94596 2.36767 2.39690 2.98073 3.01919 3.22377 3.26443 3.29590 3.53514 3.66920 3.98428 4.10870 4.18493 4.23650 4.30482 4.40745 4.58592 4.67332 4.74665 4.89148 4.90158 4.92095 4.92440 5.02330 5.11622 5.12432 5.15370 5.23396 5.28818 5.40475 5.45666 5.46147 5.50924 5.56120 5.59718 5.69505 5.74243 5.84383 5.85881 5.93595 6.10188 6.29884 6.48397 6.51393 7.18492 7.57113 7.59507 7.95716 8.33023 8.51088 9.21711 10.83712 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.001732 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.418709 B =16166.890492 C =16464.904716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.500 5.500 3 C 0.036 3.964 4 C -0.123 4.123 5 C -0.120 4.120 6 C 0.053 3.947 7 H 0.074 0.926 8 C 0.537 3.463 9 O -0.513 6.513 10 N -0.621 5.621 11 C 0.102 3.898 12 C -0.145 4.145 13 C 0.136 3.864 14 H 0.107 0.893 15 N -0.729 5.729 16 C 0.536 3.464 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.283 1.283 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.103 3.897 29 H 0.029 0.971 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.400 0.600 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 46 H 0.086 0.914 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 24.889 -11.212 30.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.224 5.224 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.159 4.159 6 C -0.059 4.059 7 H 0.092 0.908 8 C 0.324 3.676 9 O -0.386 6.386 10 N -0.358 5.358 11 C -0.022 4.022 12 C -0.184 4.184 13 C 0.029 3.971 14 H 0.125 0.875 15 N -0.384 5.384 16 C 0.322 3.678 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.208 1.208 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.021 4.021 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.635 25.411 -11.475 30.212 hybrid contribution -2.216 -1.727 0.269 2.822 sum -13.852 23.684 -11.206 29.637 Atomic orbital electron populations 1.22542 0.87130 1.02301 1.01141 1.64313 1.08342 1.14698 1.35076 1.23285 0.95047 0.89099 1.01694 1.22498 0.96791 0.98298 0.98479 1.22352 0.96018 0.97811 0.99672 1.22315 0.98398 0.92232 0.92953 0.90772 1.20079 0.76869 0.86792 0.83820 1.90718 1.48923 1.77959 1.20982 1.48393 1.71978 1.08966 1.06444 1.22086 1.01621 0.98345 0.80126 1.23098 1.01736 0.94624 0.98973 1.21944 1.01109 0.81463 0.92548 0.87462 1.45854 1.30616 1.09523 1.52372 1.20344 0.81304 0.88883 0.77228 1.90704 1.30298 1.67785 1.49978 1.23538 1.07282 0.93858 1.05781 1.85391 1.29999 1.09545 1.58311 1.22826 1.14942 0.94872 1.35871 0.90941 1.24992 0.94508 0.99341 0.94701 1.70006 1.14591 1.36249 1.29421 0.86222 0.78378 0.82593 0.78301 1.20799 1.19940 1.19927 1.22338 1.00435 0.81185 0.98097 0.95257 0.90664 0.91311 0.93405 0.89410 0.90395 0.90218 0.90198 0.90304 0.90951 0.91272 0.89959 0.88983 0.76511 0.89067 0.89107 0.92106 0.89549 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.69 16 2 N -0.50 -4.46 4.75 -232.15 -1.10 -5.56 16 3 C 0.04 0.23 6.56 -1.89 -0.01 0.22 16 4 C -0.12 -0.75 7.06 -24.87 -0.18 -0.92 16 5 C -0.12 -0.80 6.33 -25.37 -0.16 -0.96 16 6 C 0.05 0.44 2.25 -67.79 -0.15 0.29 16 7 H 0.07 0.49 7.20 -51.93 -0.37 0.12 16 8 C 0.54 6.05 6.89 -10.99 -0.08 5.97 16 9 O -0.51 -7.93 16.81 5.56 0.09 -7.84 16 10 N -0.62 -5.92 3.33 -170.54 -0.57 -6.48 16 11 C 0.10 0.72 6.28 -3.06 -0.02 0.70 16 12 C -0.15 -1.25 6.65 -24.90 -0.17 -1.42 16 13 C 0.14 1.46 3.42 -65.80 -0.23 1.24 16 14 H 0.11 1.38 7.54 -51.93 -0.39 0.99 16 15 N -0.73 -8.83 5.20 -51.74 -0.27 -9.10 16 16 C 0.54 9.34 7.85 -10.98 -0.09 9.26 16 17 O -0.51 -10.99 15.50 5.56 0.09 -10.91 16 18 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 24 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.10 1.02 6.55 -2.54 -0.02 1.00 16 29 H 0.03 0.16 8.01 -51.93 -0.42 -0.25 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.24 7.96 -51.93 -0.41 -0.17 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 39 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 3.72 8.56 -40.82 -0.35 3.37 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 47 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -36.48 397.04 -10.16 -46.64 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.77 Total: -0.50 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.11 Total: 0.53 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -1.21 Total: -46.29 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.48 -10.16 -46.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577886156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.228 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds