Wall clock time and date at job start Wed Apr 1 2020 01:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48538 * 110.99951 * 2 1 4 4 C 1.54941 * 103.22580 * 159.71912 * 3 2 1 5 5 C 1.54594 * 102.92302 * 322.58423 * 4 3 2 6 6 C 1.47903 * 110.99832 * 117.39391 * 2 1 3 7 7 H 1.09006 * 110.08252 * 333.60042 * 6 2 1 8 8 C 1.50699 * 109.91954 * 94.80419 * 6 2 1 9 9 O 1.21280 * 119.99565 * 17.59141 * 8 6 2 10 10 N 1.34769 * 120.00430 * 197.59121 * 8 6 2 11 11 C 1.47026 * 125.64648 * 359.95279 * 10 8 6 12 12 C 1.54324 * 107.27134 * 181.09757 * 11 10 8 13 13 C 1.55151 * 102.94303 * 22.19452 * 12 11 10 14 14 H 1.09006 * 111.03721 * 82.58642 * 13 12 11 15 15 N 1.46503 * 111.00704 * 206.42414 * 13 12 11 16 16 C 1.34781 * 119.99634 * 267.19781 * 15 13 12 17 17 O 1.21274 * 120.00344 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99423 * 179.97438 * 16 15 13 19 19 S 1.81001 * 109.46896 * 180.02562 * 18 16 15 20 20 C 1.76201 * 99.99894 * 180.02562 * 19 18 16 21 21 H 1.07991 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31633 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46807 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.46906 * 300.00462 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47421 * 125.65412 * 180.02562 * 10 8 6 29 29 H 1.08998 * 109.47503 * 302.60929 * 1 2 3 30 30 H 1.09005 * 109.47419 * 62.60673 * 1 2 3 31 31 H 1.09004 * 109.47148 * 182.60764 * 1 2 3 32 32 H 1.09002 * 110.66612 * 41.28675 * 3 2 1 33 33 H 1.08997 * 110.66546 * 278.15488 * 3 2 1 34 34 H 1.09001 * 110.71858 * 204.22557 * 4 3 2 35 35 H 1.08998 * 110.72173 * 80.94574 * 4 3 2 36 36 H 1.09003 * 110.30911 * 263.04847 * 5 4 3 37 37 H 1.08998 * 110.31200 * 140.87520 * 5 4 3 38 38 H 1.08998 * 109.88813 * 300.51634 * 11 10 8 39 39 H 1.09002 * 109.88075 * 61.52932 * 11 10 8 40 40 H 1.09000 * 110.72182 * 263.83375 * 12 11 10 41 41 H 1.08999 * 110.72412 * 140.56368 * 12 11 10 42 42 H 0.96994 * 119.99836 * 87.19901 * 15 13 12 43 43 H 1.09001 * 109.47454 * 60.00304 * 18 16 15 44 44 H 1.09003 * 109.47322 * 299.99933 * 18 16 15 45 45 H 0.97001 * 119.99662 * 179.97438 * 23 22 20 46 46 H 1.09004 * 110.36444 * 36.99006 * 28 10 8 47 47 H 1.08996 * 110.45926 * 274.72491 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5228 5 6 3.2982 0.1054 1.5931 6 6 1.9989 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0898 0.9642 9 8 2.3970 -2.4920 -0.1753 10 7 2.4426 -2.9436 1.9962 11 6 2.3445 -2.5918 3.4204 12 6 2.6124 -3.8782 4.2297 13 6 3.4041 -4.7601 3.2284 14 1 4.4613 -4.4945 3.2240 15 7 3.2244 -6.1833 3.5262 16 6 4.1029 -6.8206 4.3253 17 8 5.0423 -6.2162 4.7976 18 6 3.9178 -8.2845 4.6320 19 16 5.2485 -8.8452 5.7233 20 6 4.7968 -10.5378 5.9118 21 1 3.9176 -10.9207 5.4151 22 6 5.5709 -11.3792 6.6989 23 7 6.6422 -10.9124 7.3048 24 14 5.0916 -13.1735 6.8994 25 1 6.0740 -13.8526 7.7820 26 1 3.7386 -13.2597 7.5053 27 1 5.0816 -13.8347 5.5698 28 6 2.7322 -4.3848 1.8843 29 1 -0.3634 0.5538 0.8656 30 1 -0.3634 0.4728 -0.9125 31 1 -0.3634 -1.0266 0.0468 32 1 1.4237 2.0205 0.6729 33 1 2.0040 1.7977 -1.0095 34 1 3.8122 2.1353 0.9716 35 1 4.1115 0.8836 -0.2787 36 1 3.2134 0.5487 2.5854 37 1 4.1469 -0.5774 1.5542 38 1 3.0901 -1.8362 3.6678 39 1 1.3463 -2.2135 3.6409 40 1 1.6755 -4.3594 4.5103 41 1 3.2145 -3.6606 5.1118 42 1 2.4734 -6.6668 3.1481 43 1 3.9430 -8.8561 3.7043 44 1 2.9570 -8.4338 5.1248 45 1 7.1830 -11.5004 7.8551 46 1 3.4136 -4.5714 1.0543 47 1 1.8095 -4.9496 1.7509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577886156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:51 Heat of formation + Delta-G solvation = -83.389951 kcal Electronic energy + Delta-G solvation = -26990.691363 eV Core-core repulsion = 23105.606911 eV Total energy + Delta-G solvation = -3885.084453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62750 -40.70774 -39.35224 -38.12617 -35.36045 -34.57323 -33.21992 -32.35301 -30.72732 -30.68601 -28.83813 -27.63296 -26.65512 -24.86065 -22.86372 -22.35053 -22.09493 -21.71821 -20.12590 -19.84790 -18.51081 -18.10084 -17.45341 -17.04164 -16.99871 -16.86802 -16.37010 -16.34674 -15.62918 -15.42143 -15.24828 -14.83762 -14.75888 -14.63911 -14.56382 -14.38784 -13.95263 -13.72002 -13.62180 -13.39509 -13.16225 -12.95581 -12.93923 -12.85543 -12.69248 -12.57771 -12.52862 -12.34186 -12.02004 -11.89112 -11.76089 -11.72945 -11.12144 -11.00895 -10.84815 -10.27076 -10.18526 -9.74569 -9.41749 -8.65276 -8.33856 -6.11518 1.24719 1.44215 1.44462 1.53550 1.55868 1.58537 1.72941 2.27604 2.34199 2.99658 3.00339 3.27263 3.32800 3.49760 3.57397 3.63692 3.87782 3.92870 3.96699 3.99608 4.18452 4.20650 4.24544 4.32305 4.40459 4.46378 4.52782 4.53418 4.57958 4.70138 4.71028 4.76770 4.82558 4.95071 4.97451 4.99328 5.06332 5.08358 5.14381 5.21608 5.42717 5.43769 5.77457 5.99206 6.20458 6.40702 6.47306 7.07646 7.13541 7.21012 8.74923 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037706 B = 0.001732 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.418709 B =16166.890492 C =16464.904716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.038 3.962 4 C -0.122 4.122 5 C -0.119 4.119 6 C 0.057 3.943 7 H 0.098 0.902 8 C 0.532 3.468 9 O -0.566 6.566 10 N -0.619 5.619 11 C 0.104 3.896 12 C -0.138 4.138 13 C 0.135 3.865 14 H 0.083 0.917 15 N -0.703 5.703 16 C 0.541 3.459 17 O -0.560 6.560 18 C -0.131 4.131 19 S -0.149 6.149 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.279 1.279 26 H -0.261 1.261 27 H -0.264 1.264 28 C 0.108 3.892 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.418 0.582 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 25.700 -10.964 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.258 5.258 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.157 4.157 6 C -0.055 4.055 7 H 0.116 0.884 8 C 0.321 3.679 9 O -0.444 6.444 10 N -0.354 5.354 11 C -0.018 4.018 12 C -0.177 4.177 13 C 0.028 3.972 14 H 0.101 0.899 15 N -0.357 5.357 16 C 0.327 3.673 17 O -0.437 6.437 18 C -0.282 4.282 19 S 0.078 5.922 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.205 1.205 26 H -0.186 1.186 27 H -0.188 1.188 28 C -0.016 4.016 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.256 0.744 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.313 26.246 -11.234 31.937 hybrid contribution -1.442 -1.894 0.101 2.382 sum -15.755 24.353 -11.134 31.069 Atomic orbital electron populations 1.22522 0.86366 1.01713 1.02269 1.64244 1.09386 1.16272 1.35927 1.23324 0.95135 0.88166 1.02241 1.22515 0.96503 0.99094 0.97920 1.22402 0.94531 0.97491 1.01278 1.22353 0.99665 0.90011 0.93469 0.88422 1.20765 0.75801 0.88117 0.83215 1.90688 1.51545 1.79019 1.23101 1.48459 1.71003 1.08547 1.07439 1.22247 1.03795 0.97773 0.78019 1.23045 1.01613 0.94851 0.98154 1.21956 1.00422 0.80618 0.94165 0.89872 1.45531 1.29668 1.10200 1.50348 1.20012 0.81462 0.88148 0.77719 1.90698 1.32429 1.68388 1.52220 1.23379 1.04850 0.95215 1.04747 1.85554 1.34860 1.10540 1.61230 1.23182 1.15274 0.95127 1.35959 0.89884 1.26108 0.94277 1.04574 0.94138 1.70173 1.15996 1.38137 1.30390 0.85026 0.78411 0.76051 0.78653 1.20458 1.18594 1.18819 1.22225 1.00607 0.82127 0.96622 0.93268 0.90289 0.92801 0.91400 0.89526 0.88080 0.92197 0.87362 0.92075 0.89527 0.88406 0.88609 0.89700 0.74396 0.87287 0.86856 0.92014 0.91462 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 127.69 1.20 1.45 16 2 N -0.53 -8.82 4.75 -888.40 -4.22 -13.05 16 3 C 0.04 0.41 6.56 86.65 0.57 0.98 16 4 C -0.12 -1.29 7.06 31.80 0.22 -1.07 16 5 C -0.12 -1.34 6.33 31.47 0.20 -1.14 16 6 C 0.06 0.83 2.25 44.31 0.10 0.93 16 7 H 0.10 0.94 7.20 -2.38 -0.02 0.93 16 8 C 0.53 11.62 6.89 87.66 0.60 12.22 16 9 O -0.57 -17.96 16.81 -3.03 -0.05 -18.01 16 10 N -0.62 -10.91 3.33 -811.85 -2.70 -13.61 16 11 C 0.10 1.17 6.28 86.73 0.54 1.71 16 12 C -0.14 -2.07 6.65 31.78 0.21 -1.86 16 13 C 0.13 2.77 3.42 46.37 0.16 2.93 16 14 H 0.08 2.18 7.54 -2.38 -0.02 2.16 16 15 N -0.70 -15.98 5.20 -436.00 -2.27 -18.24 16 16 C 0.54 18.58 7.85 87.66 0.69 19.27 16 17 O -0.56 -24.46 15.50 -3.01 -0.05 -24.50 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.08 20.57 -56.49 -1.16 -9.25 16 20 C -0.55 -30.80 9.50 67.96 0.65 -30.15 16 21 H 0.08 4.31 7.80 -2.92 -0.02 4.29 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.43 13.22 21.65 0.29 -55.15 16 24 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 28 C 0.11 2.04 6.55 86.85 0.57 2.61 16 29 H 0.05 0.41 8.01 -2.39 -0.02 0.39 16 30 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.47 7.96 -2.39 -0.02 0.45 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 38 H 0.09 0.78 7.92 -2.39 -0.02 0.76 16 39 H 0.10 0.64 7.96 -2.39 -0.02 0.62 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.42 6.67 8.56 -92.71 -0.79 5.88 16 43 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.07 1.55 8.04 -2.39 -0.02 1.53 16 47 H 0.09 1.40 8.00 -2.39 -0.02 1.38 16 Total: -1.00 -83.37 397.04 -1.35 -84.72 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.17 Total: 17.29 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.62 Total: 4.63 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -8.90 Total: -100.05 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.10 Total: -42.51 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.25 kcal Total: -83.37 -1.35 -84.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577886156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -83.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds