Wall clock time and date at job start Wed Apr 1 2020 00:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47223 * 2 1 4 4 C 1.53001 * 109.47279 * 120.00389 * 2 1 3 5 5 N 1.46501 * 109.46881 * 175.00229 * 4 2 1 6 6 C 1.34783 * 119.99516 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00032 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99478 * 179.97438 * 6 5 4 9 9 S 1.81008 * 109.47026 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00039 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00082 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99679 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99699 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47240 * 89.99720 * 14 12 10 16 16 H 1.48503 * 109.46650 * 209.99711 * 14 12 10 17 17 H 1.48500 * 109.47129 * 329.99149 * 14 12 10 18 18 N 1.46503 * 109.47075 * 240.00523 * 2 1 3 19 19 C 1.34777 * 120.00189 * 84.99900 * 18 2 1 20 20 O 1.21279 * 119.99729 * 359.97438 * 19 18 2 21 21 C 1.50699 * 120.00001 * 180.02562 * 19 18 2 22 22 C 1.56244 * 116.68982 * 298.98595 * 21 19 18 23 23 C 1.54657 * 103.21589 * 158.95541 * 22 21 19 24 24 N 1.49516 * 105.28321 * 0.65888 * 23 22 21 25 25 C 1.49521 * 105.92605 * 71.26075 * 24 23 22 26 26 C 1.54652 * 105.28355 * 288.73703 * 25 24 23 27 27 C 1.50462 * 102.03650 * 324.84896 * 24 23 22 28 28 H 1.08997 * 109.47534 * 59.99974 * 1 2 3 29 29 H 1.09003 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47126 * 299.99244 * 1 2 3 31 31 H 1.08999 * 109.47012 * 294.99984 * 4 2 1 32 32 H 1.09004 * 109.47103 * 55.00130 * 4 2 1 33 33 H 0.96998 * 120.00114 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47931 * 299.99766 * 8 6 5 35 35 H 1.09004 * 109.47033 * 60.00290 * 8 6 5 36 36 H 0.96999 * 120.00509 * 180.02562 * 13 12 10 37 37 H 0.97002 * 119.99517 * 265.00074 * 18 2 1 38 38 H 1.08996 * 110.67261 * 40.52058 * 22 21 19 39 39 H 1.08999 * 110.66447 * 277.38724 * 22 21 19 40 40 H 1.09003 * 110.27845 * 119.60780 * 23 22 21 41 41 H 1.08997 * 110.27860 * 241.70534 * 23 22 21 42 42 H 1.08999 * 110.27828 * 47.69056 * 25 24 23 43 43 H 1.08994 * 110.27748 * 169.78580 * 25 24 23 44 44 H 1.08998 * 110.66837 * 240.91137 * 26 25 24 45 45 H 1.09004 * 110.66659 * 117.77354 * 26 25 24 46 46 H 1.09003 * 111.91171 * 171.60204 * 27 24 23 47 47 H 1.09003 * 111.90947 * 297.74219 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4293 2.1906 7 8 3.5700 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1299 9 16 6.2783 -2.3910 3.6078 10 6 8.0101 -2.3780 3.2829 11 1 8.3863 -1.9247 2.3778 12 6 8.8907 -2.9502 4.1904 13 7 8.4322 -3.5022 5.2939 14 14 10.7267 -2.9358 3.8464 15 1 11.3278 -1.7042 4.4182 16 1 11.3561 -4.1285 4.4681 17 1 10.9557 -2.9634 2.3794 18 7 2.0183 -0.6905 -1.1963 19 6 2.1470 -0.0181 -2.3572 20 8 1.8581 1.1585 -2.4116 21 6 2.6488 -0.7286 -3.5878 22 6 4.0850 -1.3388 -3.5093 23 6 4.0770 -2.4069 -4.6278 24 7 2.7169 -2.3230 -5.2431 25 6 2.6897 -1.0365 -6.0047 26 6 2.6550 0.0736 -4.9286 27 6 1.8536 -2.0015 -4.0535 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4627 0.4315 34 1 5.9630 -2.1006 1.2420 35 1 6.1098 -0.5393 2.0842 36 1 9.0476 -3.9018 5.9283 37 1 2.2490 -1.6317 -1.1527 38 1 4.2539 -1.8014 -2.5369 39 1 4.8382 -0.5770 -3.7102 40 1 4.8423 -2.1817 -5.3707 41 1 4.2399 -3.3981 -4.2049 42 1 3.5863 -0.9411 -6.6172 43 1 1.7976 -0.9858 -6.6288 44 1 1.7492 0.6725 -5.0228 45 1 3.5424 0.7030 -4.9963 46 1 0.8321 -1.7585 -4.3460 47 1 1.8794 -2.7945 -3.3060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584258421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:51 Heat of formation + Delta-G solvation = -55.432339 kcal Electronic energy + Delta-G solvation = -27571.773196 eV Core-core repulsion = 23687.901076 eV Total energy + Delta-G solvation = -3883.872120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62144 -39.80827 -38.98162 -36.53726 -33.77591 -32.46477 -32.05348 -31.07487 -30.54722 -29.42738 -28.57174 -26.08355 -25.42424 -23.57173 -22.89393 -21.66245 -20.97930 -20.42190 -19.69524 -17.99399 -17.56490 -16.98886 -16.32707 -16.28483 -16.02495 -15.87086 -15.22920 -15.09840 -14.83765 -14.75557 -14.10133 -13.69689 -13.61120 -13.27343 -13.23999 -13.09038 -12.94994 -12.90803 -12.62627 -12.61385 -12.31524 -12.21344 -11.91210 -11.86048 -11.75302 -11.34319 -11.14726 -11.09446 -11.06004 -10.79426 -10.70917 -10.23811 -9.85881 -9.59540 -9.49906 -9.43913 -9.11129 -9.01716 -8.28499 -6.54410 -6.25207 -3.96203 2.14030 2.62300 2.96245 3.01236 3.19880 3.25231 3.28771 3.45124 3.64600 3.83892 3.98539 4.16907 4.28141 4.37926 4.48055 4.57051 4.66831 4.73870 4.78118 4.90811 5.00721 5.05332 5.08159 5.10129 5.16101 5.28451 5.28972 5.31639 5.35337 5.40963 5.44874 5.47626 5.55678 5.61710 5.65647 5.70216 5.82037 5.85490 5.99642 6.07275 6.08459 6.14963 6.47302 7.07533 7.55720 7.58261 7.81830 8.31574 8.50984 9.20223 10.82200 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.002552 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.646880 B =10970.084382 C =12721.357972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.722 5.722 19 C 0.554 3.446 20 O -0.533 6.533 21 C -0.133 4.133 22 C -0.136 4.136 23 C 0.012 3.988 24 N -0.463 5.463 25 C 0.011 3.989 26 C -0.123 4.123 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.403 0.597 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 5.613 -21.702 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.375 5.375 19 C 0.339 3.661 20 O -0.408 6.408 21 C -0.138 4.138 22 C -0.175 4.175 23 C -0.117 4.117 24 N -0.183 5.183 25 C -0.118 4.118 26 C -0.162 4.162 27 C -0.103 4.103 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.238 0.762 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.808 4.984 -20.405 26.288 hybrid contribution 2.541 1.069 -1.108 2.971 sum -13.267 6.052 -21.513 25.989 Atomic orbital electron populations 1.22101 0.93899 1.02771 1.03143 1.21279 0.95058 0.97843 0.83138 0.88590 1.21619 0.81168 1.01358 0.97022 1.46002 1.06771 1.62107 1.24673 1.20326 0.89533 0.76723 0.81593 1.90713 1.69843 1.45929 1.32394 1.23530 0.93469 1.05711 1.07717 1.85403 1.04655 1.73006 1.20177 1.22855 0.91496 1.44352 1.09728 0.90946 1.24991 0.99608 0.94500 0.94456 1.70009 1.35447 1.35421 1.09376 0.86169 0.82892 0.77882 0.78567 1.20256 1.20725 1.19688 1.46078 1.67535 1.14396 1.09449 1.19394 0.76959 0.86490 0.83229 1.90720 1.49587 1.15744 1.84772 1.23760 0.97872 0.97811 0.94373 1.23284 0.94392 0.98973 1.00887 1.23657 0.92335 0.99545 0.96174 1.69959 1.05501 1.29214 1.13597 1.23663 1.03289 0.88122 0.96745 1.23015 1.03717 0.97870 0.91577 1.24560 0.98017 0.94178 0.93539 0.91622 0.91916 0.90959 0.89863 0.90841 0.76807 0.89292 0.89253 0.92143 0.76172 0.90374 0.90204 0.90048 0.89234 0.90151 0.89629 0.90331 0.90541 0.89053 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.13 1.07 2.73 -67.93 -0.19 0.89 16 3 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 4 C 0.11 1.12 5.23 -4.04 -0.02 1.10 16 5 N -0.74 -8.89 5.39 -60.29 -0.32 -9.22 16 6 C 0.53 9.31 7.85 -10.98 -0.09 9.23 16 7 O -0.51 -11.11 15.86 5.56 0.09 -11.02 16 8 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 14 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 N -0.72 -5.38 4.52 -53.81 -0.24 -5.62 16 19 C 0.55 5.07 7.28 -10.99 -0.08 4.99 16 20 O -0.53 -6.83 16.21 5.56 0.09 -6.74 16 21 C -0.13 -0.97 1.39 -149.93 -0.21 -1.18 16 22 C -0.14 -0.90 6.03 -24.12 -0.15 -1.04 16 23 C 0.01 0.08 6.61 -1.49 -0.01 0.07 16 24 N -0.46 -3.35 6.94 -222.07 -1.54 -4.89 16 25 C 0.01 0.07 6.61 -1.49 -0.01 0.06 16 26 C -0.12 -0.89 5.68 -24.12 -0.14 -1.03 16 27 C 0.03 0.17 6.47 0.43 0.00 0.18 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.00 8.14 -40.82 -0.33 3.67 16 34 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 35 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.40 2.50 8.60 -40.82 -0.35 2.15 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.54 7.82 -51.93 -0.41 0.14 16 40 H 0.08 0.48 7.69 -51.93 -0.40 0.08 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.45 7.69 -51.93 -0.40 0.05 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -35.10 397.34 -10.28 -45.38 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.72 Total: 1.94 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.11 Total: -3.03 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.38 Total: -44.84 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.18 Total: -17.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.10 -10.28 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584258421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.054 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds