Wall clock time and date at job start Wed Apr 1 2020 00:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47223 * 2 1 4 4 C 1.53001 * 109.47279 * 120.00389 * 2 1 3 5 5 N 1.46501 * 109.46881 * 175.00229 * 4 2 1 6 6 C 1.34783 * 119.99516 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00032 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99478 * 179.97438 * 6 5 4 9 9 S 1.81008 * 109.47026 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00039 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00082 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99679 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00290 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99699 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47240 * 89.99720 * 14 12 10 16 16 H 1.48503 * 109.46650 * 209.99711 * 14 12 10 17 17 H 1.48500 * 109.47129 * 329.99149 * 14 12 10 18 18 N 1.46503 * 109.47075 * 240.00523 * 2 1 3 19 19 C 1.34777 * 120.00189 * 84.99900 * 18 2 1 20 20 O 1.21279 * 119.99729 * 359.97438 * 19 18 2 21 21 C 1.50699 * 120.00001 * 180.02562 * 19 18 2 22 22 C 1.56244 * 116.68982 * 298.98595 * 21 19 18 23 23 C 1.54657 * 103.21589 * 158.95541 * 22 21 19 24 24 N 1.49516 * 105.28321 * 0.65888 * 23 22 21 25 25 C 1.49521 * 105.92605 * 71.26075 * 24 23 22 26 26 C 1.54652 * 105.28355 * 288.73703 * 25 24 23 27 27 C 1.50462 * 102.03650 * 324.84896 * 24 23 22 28 28 H 1.08997 * 109.47534 * 59.99974 * 1 2 3 29 29 H 1.09003 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47126 * 299.99244 * 1 2 3 31 31 H 1.08999 * 109.47012 * 294.99984 * 4 2 1 32 32 H 1.09004 * 109.47103 * 55.00130 * 4 2 1 33 33 H 0.96998 * 120.00114 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47931 * 299.99766 * 8 6 5 35 35 H 1.09004 * 109.47033 * 60.00290 * 8 6 5 36 36 H 0.96999 * 120.00509 * 180.02562 * 13 12 10 37 37 H 0.97002 * 119.99517 * 265.00074 * 18 2 1 38 38 H 1.08996 * 110.67261 * 40.52058 * 22 21 19 39 39 H 1.08999 * 110.66447 * 277.38724 * 22 21 19 40 40 H 1.09003 * 110.27845 * 119.60780 * 23 22 21 41 41 H 1.08997 * 110.27860 * 241.70534 * 23 22 21 42 42 H 1.08999 * 110.27828 * 47.69056 * 25 24 23 43 43 H 1.08994 * 110.27748 * 169.78580 * 25 24 23 44 44 H 1.08998 * 110.66837 * 240.91137 * 26 25 24 45 45 H 1.09004 * 110.66659 * 117.77354 * 26 25 24 46 46 H 1.09003 * 111.91171 * 171.60204 * 27 24 23 47 47 H 1.09003 * 111.90947 * 297.74219 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1731 -1.4293 2.1906 7 8 3.5700 -1.8843 3.1393 8 6 5.6749 -1.5378 2.1299 9 16 6.2783 -2.3910 3.6078 10 6 8.0101 -2.3780 3.2829 11 1 8.3863 -1.9247 2.3778 12 6 8.8907 -2.9502 4.1904 13 7 8.4322 -3.5022 5.2939 14 14 10.7267 -2.9358 3.8464 15 1 11.3278 -1.7042 4.4182 16 1 11.3561 -4.1285 4.4681 17 1 10.9557 -2.9634 2.3794 18 7 2.0183 -0.6905 -1.1963 19 6 2.1470 -0.0181 -2.3572 20 8 1.8581 1.1585 -2.4116 21 6 2.6488 -0.7286 -3.5878 22 6 4.0850 -1.3388 -3.5093 23 6 4.0770 -2.4069 -4.6278 24 7 2.7169 -2.3230 -5.2431 25 6 2.6897 -1.0365 -6.0047 26 6 2.6550 0.0736 -4.9286 27 6 1.8536 -2.0015 -4.0535 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4627 0.4315 34 1 5.9630 -2.1006 1.2420 35 1 6.1098 -0.5393 2.0842 36 1 9.0476 -3.9018 5.9283 37 1 2.2490 -1.6317 -1.1527 38 1 4.2539 -1.8014 -2.5369 39 1 4.8382 -0.5770 -3.7102 40 1 4.8423 -2.1817 -5.3707 41 1 4.2399 -3.3981 -4.2049 42 1 3.5863 -0.9411 -6.6172 43 1 1.7976 -0.9858 -6.6288 44 1 1.7492 0.6725 -5.0228 45 1 3.5424 0.7030 -4.9963 46 1 0.8321 -1.7585 -4.3460 47 1 1.8794 -2.7945 -3.3060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584258421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:50 Heat of formation + Delta-G solvation = -83.383482 kcal Electronic energy + Delta-G solvation = -27572.985249 eV Core-core repulsion = 23687.901076 eV Total energy + Delta-G solvation = -3885.084172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21363 -40.82678 -40.02804 -37.47046 -34.87205 -34.57720 -32.82507 -31.60614 -31.31237 -30.67046 -29.09620 -27.73816 -26.84360 -24.27198 -23.41423 -22.30472 -21.76080 -21.60882 -20.38501 -19.80432 -18.34230 -17.86256 -17.66767 -17.12533 -16.87448 -16.86799 -16.43561 -16.36716 -15.93675 -15.84699 -15.51408 -14.85421 -14.55117 -14.30069 -14.23693 -13.94589 -13.79173 -13.72546 -13.61293 -13.25981 -13.16226 -13.15271 -13.01368 -12.89100 -12.72775 -12.60170 -12.41482 -12.30371 -12.07109 -11.72362 -11.68882 -11.23778 -11.14211 -11.00182 -10.99561 -10.28283 -10.26897 -10.17034 -10.02268 -8.65836 -8.34503 -6.12077 1.26854 1.42411 1.42567 1.47304 1.57189 1.59713 1.94956 2.24936 2.29137 2.92107 2.99902 3.27182 3.32009 3.42369 3.54759 3.80151 3.89970 3.95973 4.03543 4.05496 4.16120 4.22850 4.25809 4.29567 4.48181 4.50990 4.51163 4.57293 4.63666 4.69577 4.75404 4.79390 4.80218 4.92100 4.93578 4.96365 5.04959 5.11915 5.21933 5.35264 5.41440 5.42420 5.48826 5.64752 6.20077 6.40243 6.43123 7.07227 7.12076 7.19834 8.74560 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.002552 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.646880 B =10970.084382 C =12721.357972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.714 5.714 6 C 0.537 3.463 7 O -0.560 6.560 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.257 1.257 18 N -0.711 5.711 19 C 0.556 3.444 20 O -0.572 6.572 21 C -0.133 4.133 22 C -0.132 4.132 23 C 0.013 3.987 24 N -0.475 5.475 25 C 0.015 3.985 26 C -0.122 4.122 27 C 0.030 3.970 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.412 0.588 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 5.706 -23.643 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.181 1.181 18 N -0.364 5.364 19 C 0.343 3.657 20 O -0.450 6.450 21 C -0.138 4.138 22 C -0.171 4.171 23 C -0.116 4.116 24 N -0.195 5.195 25 C -0.114 4.114 26 C -0.161 4.161 27 C -0.099 4.099 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.253 5.081 -22.395 27.568 hybrid contribution 2.245 1.097 -0.584 2.566 sum -13.008 6.178 -22.978 27.118 Atomic orbital electron populations 1.22057 0.92756 1.03501 1.03104 1.21132 0.95767 0.96941 0.82442 0.89647 1.21736 0.79342 1.01919 0.97823 1.45719 1.07750 1.59937 1.23377 1.19987 0.88768 0.76956 0.82020 1.90707 1.70318 1.48348 1.34445 1.23378 0.94864 1.05642 1.04358 1.85562 1.05723 1.74955 1.25843 1.23194 0.91772 1.44275 1.10116 0.89964 1.26099 1.05096 0.93836 0.94056 1.70171 1.37365 1.36576 1.10625 0.84981 0.76021 0.78034 0.79127 1.19497 1.20340 1.18100 1.45994 1.66826 1.14703 1.08855 1.19654 0.76216 0.85979 0.83858 1.90709 1.51435 1.17498 1.85379 1.23691 0.98626 0.97999 0.93485 1.23271 0.93609 0.98916 1.01326 1.23676 0.92129 0.99569 0.96199 1.69952 1.06013 1.29560 1.13940 1.23661 1.03939 0.87365 0.96436 1.22994 1.02964 0.98064 0.92084 1.24581 0.97812 0.93912 0.93598 0.92579 0.90805 0.90095 0.90140 0.90255 0.75224 0.87016 0.87662 0.92004 0.75086 0.89803 0.90409 0.89497 0.88926 0.89321 0.89248 0.91525 0.90856 0.89099 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 71.98 0.68 -1.28 16 2 C 0.14 2.06 2.73 44.99 0.12 2.19 16 3 H 0.09 1.51 7.58 -2.39 -0.02 1.49 16 4 C 0.12 2.08 5.23 86.38 0.45 2.53 16 5 N -0.71 -15.63 5.39 -463.05 -2.50 -18.12 16 6 C 0.54 18.14 7.85 87.65 0.69 18.82 16 7 O -0.56 -24.15 15.86 -3.02 -0.05 -24.20 16 8 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 9 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 10 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 11 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 12 C 0.01 0.78 5.49 84.86 0.47 1.25 16 13 N -0.91 -55.16 13.22 21.65 0.29 -54.88 16 14 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 18 N -0.71 -9.19 4.52 -442.53 -2.00 -11.19 16 19 C 0.56 9.45 7.28 87.66 0.64 10.09 16 20 O -0.57 -14.31 16.21 -3.03 -0.05 -14.36 16 21 C -0.13 -1.74 1.39 -49.21 -0.07 -1.81 16 22 C -0.13 -1.47 6.03 32.29 0.19 -1.28 16 23 C 0.01 0.14 6.61 86.36 0.57 0.71 16 24 N -0.47 -5.99 6.94 -856.50 -5.94 -11.93 16 25 C 0.01 0.16 6.61 86.35 0.57 0.74 16 26 C -0.12 -1.66 5.68 32.28 0.18 -1.48 16 27 C 0.03 0.34 6.47 87.06 0.56 0.90 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.41 7.10 8.14 -92.71 -0.75 6.35 16 34 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.41 4.03 8.60 -92.71 -0.80 3.23 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.91 7.82 -2.39 -0.02 0.90 16 40 H 0.09 0.84 7.69 -2.39 -0.02 0.82 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.09 0.84 7.69 -2.39 -0.02 0.82 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 45 H 0.07 1.03 7.82 -2.39 -0.02 1.01 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.45 397.34 -3.80 -81.25 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.57 Total: 20.60 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 6.15 Total: -2.89 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -10.15 Total: -96.13 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.10 Total: -38.56 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -77.45 -3.80 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584258421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.132 kcal (2) G-P(sol) polarization free energy of solvation -77.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds