Wall clock time and date at job start Wed Apr 1 2020 00:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47072 * 2 1 4 4 C 1.50702 * 109.47015 * 240.00271 * 2 1 3 5 5 H 1.07996 * 119.99987 * 240.00245 * 4 2 1 6 6 C 1.37876 * 120.00241 * 59.99887 * 4 2 1 7 7 N 1.31521 * 119.99997 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47349 * 89.99830 * 8 6 4 10 10 H 1.48506 * 109.47116 * 210.00291 * 8 6 4 11 11 H 1.48502 * 109.47010 * 330.00021 * 8 6 4 12 12 C 1.50699 * 109.47092 * 120.00466 * 2 1 3 13 13 O 1.21281 * 120.00280 * 83.76507 * 12 2 1 14 14 N 1.34775 * 119.99607 * 263.77089 * 12 2 1 15 15 C 1.39738 * 120.00195 * 4.04697 * 14 12 2 16 16 C 1.38744 * 120.13189 * 266.27437 * 15 14 12 17 17 C 1.38134 * 120.04265 * 179.97438 * 16 15 14 18 18 C 1.38413 * 120.31459 * 0.02562 * 17 16 15 19 19 C 1.38022 * 120.26087 * 359.67800 * 18 17 16 20 20 C 1.39244 * 119.95080 * 0.59652 * 19 18 17 21 21 C 1.48378 * 120.15293 * 179.69794 * 20 19 18 22 22 N 1.34083 * 126.67565 * 179.70365 * 21 20 19 23 23 N 1.28984 * 107.25970 * 180.02562 * 22 21 20 24 24 N 1.28728 * 108.95469 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.33396 * 180.02562 * 24 23 22 26 26 N 1.28867 * 109.32857 * 0.02562 * 24 23 22 27 27 C 1.46506 * 119.99771 * 184.05362 * 14 12 2 28 28 C 1.53779 * 113.61457 * 43.43114 * 27 14 12 29 29 C 1.53782 * 87.07898 * 220.02113 * 28 27 14 30 30 C 1.53772 * 87.08232 * 25.43201 * 29 28 27 31 31 H 1.09000 * 109.47081 * 52.69979 * 1 2 3 32 32 H 1.09003 * 109.47194 * 172.69708 * 1 2 3 33 33 H 1.08999 * 109.47276 * 292.69843 * 1 2 3 34 34 H 0.96993 * 119.99879 * 180.02562 * 7 6 4 35 35 H 1.08000 * 119.98408 * 359.97438 * 16 15 14 36 36 H 1.07999 * 119.84522 * 179.97438 * 17 16 15 37 37 H 1.07995 * 119.86546 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02382 * 180.31982 * 19 18 17 39 39 H 1.09003 * 112.84728 * 174.74325 * 27 14 12 40 40 H 1.09000 * 113.61376 * 334.57133 * 28 27 14 41 41 H 1.09003 * 113.61211 * 105.47445 * 28 27 14 42 42 H 1.08999 * 113.61300 * 270.88391 * 29 28 27 43 43 H 1.08994 * 113.61341 * 139.98670 * 29 28 27 44 44 H 1.09002 * 113.61968 * 220.01728 * 30 29 28 45 45 H 1.09005 * 113.68837 * 89.12886 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1412 -5.1124 11 1 3.6293 -1.7583 -3.7123 12 6 2.0324 -0.7105 1.2304 13 8 2.1270 -1.9196 1.2364 14 7 2.3764 -0.0022 2.3242 15 6 2.1879 1.3822 2.3480 16 6 3.2225 2.2322 1.9845 17 6 3.0340 3.6005 2.0082 18 6 1.8154 4.1313 2.3941 19 6 0.7756 3.2973 2.7523 20 6 0.9553 1.9166 2.7380 21 6 -0.1574 1.0160 3.1287 22 7 -0.1307 -0.3242 3.1570 23 7 -1.2932 -0.7219 3.5496 24 7 -2.0361 0.3069 3.7657 25 1 -2.9571 0.2800 4.0693 26 7 -1.3647 1.3780 3.5155 27 6 2.9480 -0.6838 3.4883 28 6 4.0067 -1.7387 3.1260 29 6 3.3940 -2.6181 4.2289 30 6 2.0835 -1.8442 4.0087 31 1 -0.3633 0.6228 -0.8175 32 1 -0.3634 -1.0193 -0.1306 33 1 -0.3634 0.3965 0.9481 34 1 0.7089 1.1615 -3.4844 35 1 4.1758 1.8240 1.6829 36 1 3.8416 4.2592 1.7250 37 1 1.6761 5.2021 2.4103 38 1 -0.1753 3.7154 3.0479 39 1 3.2672 0.0070 4.2687 40 1 3.8882 -2.1498 2.1235 41 1 5.0283 -1.4224 3.3370 42 1 3.8363 -2.4569 5.2119 43 1 3.3288 -3.6725 3.9607 44 1 1.5524 -1.6131 4.9320 45 1 1.4382 -2.2833 3.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:15 Heat of formation + Delta-G solvation = 158.250758 kcal Electronic energy + Delta-G solvation = -31814.988455 eV Core-core repulsion = 27837.231129 eV Total energy + Delta-G solvation = -3977.757326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.17066 -40.39940 -38.56475 -36.79630 -34.41618 -33.86668 -33.51246 -33.34565 -30.39485 -30.24665 -29.14286 -25.25836 -25.06420 -24.93439 -24.50500 -24.12970 -22.73329 -21.61352 -21.32301 -19.74167 -19.05741 -18.08883 -17.13314 -16.83894 -16.33135 -16.06686 -15.40857 -15.23548 -14.83032 -14.62415 -14.13106 -13.82313 -13.58913 -13.39037 -13.17717 -12.79837 -12.62317 -12.39503 -12.19330 -12.00689 -11.66330 -11.60152 -11.41860 -11.25303 -11.01563 -10.93110 -10.88350 -10.77876 -10.55741 -10.53195 -10.38663 -10.15834 -10.07324 -9.99955 -9.90779 -8.95905 -8.75965 -8.53562 -8.39449 -8.06337 -7.90094 -5.98300 -4.01506 0.88689 1.46841 1.49530 2.45644 2.64989 3.35462 3.41030 3.46035 3.64719 3.81917 3.88645 3.99373 4.46105 4.49710 5.07298 5.09947 5.12119 5.20390 5.29462 5.33858 5.34899 5.47361 5.53668 5.58067 5.68695 5.75100 5.88853 6.06692 6.10085 6.23591 6.29754 6.36488 6.44887 6.53885 6.60110 6.66029 6.66851 6.73388 6.78169 6.87590 6.96127 7.04452 7.12231 7.43550 7.56923 7.81879 8.02600 8.20614 8.45808 8.49558 9.01934 9.33798 9.62514 11.09187 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.005569 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.730305 B = 5026.271657 C = 5572.599195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.035 3.965 3 H 0.043 0.957 4 C -0.498 4.498 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.546 3.454 13 O -0.528 6.528 14 N -0.575 5.575 15 C 0.197 3.803 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.022 4.022 21 C 0.227 3.773 22 N -0.230 5.230 23 N -0.056 5.056 24 N -0.238 5.238 25 H 0.470 0.530 26 N -0.302 5.302 27 C 0.130 3.870 28 C -0.152 4.152 29 C -0.142 4.142 30 C -0.127 4.127 31 H 0.083 0.917 32 H 0.032 0.968 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 6.468 15.492 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.014 3.986 3 H 0.061 0.939 4 C -0.537 4.537 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.339 3.661 13 O -0.403 6.403 14 N -0.305 5.305 15 C 0.103 3.897 16 C -0.135 4.135 17 C -0.110 4.110 18 C -0.144 4.144 19 C -0.096 4.096 20 C -0.026 4.026 21 C -0.052 4.052 22 N -0.103 5.103 23 N -0.052 5.052 24 N -0.082 5.082 25 H 0.323 0.677 26 N -0.154 5.154 27 C 0.027 3.973 28 C -0.190 4.190 29 C -0.180 4.180 30 C -0.166 4.166 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.110 0.890 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.139 5.269 15.445 16.358 hybrid contribution -0.286 0.156 -0.780 0.845 sum -1.425 5.425 14.664 15.701 Atomic orbital electron populations 1.21629 0.96515 1.00575 0.98740 1.18840 0.94021 0.96457 0.89248 0.93904 1.21003 1.31266 1.12206 0.89180 0.91617 1.24913 0.95125 0.94990 0.98926 1.69909 1.36960 1.22928 1.23355 0.86509 0.79422 0.79312 0.82306 1.20686 1.21294 1.19781 1.21750 0.73823 0.87626 0.82890 1.90440 1.52386 1.14656 1.82779 1.45620 1.64955 1.03609 1.16362 1.17410 0.91479 0.84557 0.96264 1.21411 0.99339 0.93201 0.99525 1.21177 0.97539 0.94656 0.97585 1.21032 0.93003 0.99810 1.00515 1.21013 0.99483 0.91005 0.98100 1.17642 0.89648 0.91188 1.04171 1.23434 0.91444 0.90149 1.00196 1.76455 1.10240 1.09177 1.14421 1.78979 0.97944 1.14914 1.13357 1.47660 1.15909 1.01012 1.43616 0.67653 1.74831 1.06042 1.13621 1.20890 1.22504 0.95095 0.92324 0.87376 1.23462 0.96620 0.96836 1.02063 1.22639 0.98133 0.99361 0.97828 1.23255 0.96422 0.96099 1.00792 0.89843 0.94891 0.97697 0.93060 0.84856 0.85323 0.85338 0.85006 0.88971 0.86983 0.92645 0.91419 0.91461 0.93439 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 8.85 37.16 0.33 -2.65 16 2 C 0.04 0.92 2.13 -92.92 -0.20 0.72 16 3 H 0.04 1.15 6.53 -51.93 -0.34 0.81 16 4 C -0.50 -14.33 8.31 -34.44 -0.29 -14.62 16 5 H 0.07 1.96 7.29 -52.49 -0.38 1.58 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.54 11.41 55.43 0.63 -24.91 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.55 12.79 4.93 -10.99 -0.05 12.73 16 13 O -0.53 -13.48 11.84 5.56 0.07 -13.41 16 14 N -0.58 -11.03 1.49 -105.32 -0.16 -11.19 16 15 C 0.20 3.43 3.48 -83.45 -0.29 3.14 16 16 C -0.12 -1.75 9.55 -39.43 -0.38 -2.12 16 17 C -0.09 -1.12 10.03 -39.56 -0.40 -1.51 16 18 C -0.13 -1.48 10.03 -39.60 -0.40 -1.88 16 19 C -0.08 -1.03 9.69 -39.29 -0.38 -1.41 16 20 C -0.02 -0.36 5.63 -104.73 -0.59 -0.95 16 21 C 0.23 3.88 5.89 -156.28 -0.92 2.96 16 22 N -0.23 -4.21 6.76 32.15 0.22 -3.99 16 23 N -0.06 -0.90 13.47 60.35 0.81 -0.09 16 24 N -0.24 -2.93 7.90 60.35 0.48 -2.45 16 25 H 0.47 3.29 8.96 -340.36 -3.05 0.24 16 26 N -0.30 -4.39 12.08 32.16 0.39 -4.00 16 27 C 0.13 2.18 4.28 -67.12 -0.29 1.89 16 28 C -0.15 -2.52 7.37 -25.92 -0.19 -2.71 16 29 C -0.14 -2.11 8.08 -25.92 -0.21 -2.32 16 30 C -0.13 -2.16 5.63 -25.92 -0.15 -2.31 16 31 H 0.08 2.29 6.30 -51.93 -0.33 1.97 16 32 H 0.03 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.00 0.10 4.43 -51.93 -0.23 -0.13 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.57 7.88 -52.49 -0.41 1.16 16 39 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 40 H 0.11 2.28 5.66 -51.93 -0.29 1.98 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.11 2.30 5.79 -51.93 -0.30 2.00 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -33.86 359.05 -9.93 -43.79 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.27 Total: 3.20 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -4.49 Total: -9.39 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 2.37 Total: -46.63 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.86 -9.93 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.042 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds