Wall clock time and date at job start Wed Apr 1 2020 00:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47072 * 2 1 4 4 C 1.50702 * 109.47015 * 240.00271 * 2 1 3 5 5 H 1.07996 * 119.99987 * 240.00245 * 4 2 1 6 6 C 1.37876 * 120.00241 * 59.99887 * 4 2 1 7 7 N 1.31521 * 119.99997 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00243 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47349 * 89.99830 * 8 6 4 10 10 H 1.48506 * 109.47116 * 210.00291 * 8 6 4 11 11 H 1.48502 * 109.47010 * 330.00021 * 8 6 4 12 12 C 1.50699 * 109.47092 * 120.00466 * 2 1 3 13 13 O 1.21281 * 120.00280 * 83.76507 * 12 2 1 14 14 N 1.34775 * 119.99607 * 263.77089 * 12 2 1 15 15 C 1.39738 * 120.00195 * 4.04697 * 14 12 2 16 16 C 1.38744 * 120.13189 * 266.27437 * 15 14 12 17 17 C 1.38134 * 120.04265 * 179.97438 * 16 15 14 18 18 C 1.38413 * 120.31459 * 0.02562 * 17 16 15 19 19 C 1.38022 * 120.26087 * 359.67800 * 18 17 16 20 20 C 1.39244 * 119.95080 * 0.59652 * 19 18 17 21 21 C 1.48378 * 120.15293 * 179.69794 * 20 19 18 22 22 N 1.34083 * 126.67565 * 179.70365 * 21 20 19 23 23 N 1.28984 * 107.25970 * 180.02562 * 22 21 20 24 24 N 1.28728 * 108.95469 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.33396 * 180.02562 * 24 23 22 26 26 N 1.28867 * 109.32857 * 0.02562 * 24 23 22 27 27 C 1.46506 * 119.99771 * 184.05362 * 14 12 2 28 28 C 1.53779 * 113.61457 * 43.43114 * 27 14 12 29 29 C 1.53782 * 87.07898 * 220.02113 * 28 27 14 30 30 C 1.53772 * 87.08232 * 25.43201 * 29 28 27 31 31 H 1.09000 * 109.47081 * 52.69979 * 1 2 3 32 32 H 1.09003 * 109.47194 * 172.69708 * 1 2 3 33 33 H 1.08999 * 109.47276 * 292.69843 * 1 2 3 34 34 H 0.96993 * 119.99879 * 180.02562 * 7 6 4 35 35 H 1.08000 * 119.98408 * 359.97438 * 16 15 14 36 36 H 1.07999 * 119.84522 * 179.97438 * 17 16 15 37 37 H 1.07995 * 119.86546 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02382 * 180.31982 * 19 18 17 39 39 H 1.09003 * 112.84728 * 174.74325 * 27 14 12 40 40 H 1.09000 * 113.61376 * 334.57133 * 28 27 14 41 41 H 1.09003 * 113.61211 * 105.47445 * 28 27 14 42 42 H 1.08999 * 113.61300 * 270.88391 * 29 28 27 43 43 H 1.08994 * 113.61341 * 139.98670 * 29 28 27 44 44 H 1.09002 * 113.61968 * 220.01728 * 30 29 28 45 45 H 1.09005 * 113.68837 * 89.12886 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1412 -5.1124 11 1 3.6293 -1.7583 -3.7123 12 6 2.0324 -0.7105 1.2304 13 8 2.1270 -1.9196 1.2364 14 7 2.3764 -0.0022 2.3242 15 6 2.1879 1.3822 2.3480 16 6 3.2225 2.2322 1.9845 17 6 3.0340 3.6005 2.0082 18 6 1.8154 4.1313 2.3941 19 6 0.7756 3.2973 2.7523 20 6 0.9553 1.9166 2.7380 21 6 -0.1574 1.0160 3.1287 22 7 -0.1307 -0.3242 3.1570 23 7 -1.2932 -0.7219 3.5496 24 7 -2.0361 0.3069 3.7657 25 1 -2.9571 0.2800 4.0693 26 7 -1.3647 1.3780 3.5155 27 6 2.9480 -0.6838 3.4883 28 6 4.0067 -1.7387 3.1260 29 6 3.3940 -2.6181 4.2289 30 6 2.0835 -1.8442 4.0087 31 1 -0.3633 0.6228 -0.8175 32 1 -0.3634 -1.0193 -0.1306 33 1 -0.3634 0.3965 0.9481 34 1 0.7089 1.1615 -3.4844 35 1 4.1758 1.8240 1.6829 36 1 3.8416 4.2592 1.7250 37 1 1.6761 5.2021 2.4103 38 1 -0.1753 3.7154 3.0479 39 1 3.2672 0.0070 4.2687 40 1 3.8882 -2.1498 2.1235 41 1 5.0283 -1.4224 3.3370 42 1 3.8363 -2.4569 5.2119 43 1 3.3288 -3.6725 3.9607 44 1 1.5524 -1.6131 4.9320 45 1 1.4382 -2.2833 3.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:14 Heat of formation + Delta-G solvation = 137.755835 kcal Electronic energy + Delta-G solvation = -31815.877181 eV Core-core repulsion = 27837.231129 eV Total energy + Delta-G solvation = -3978.646052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.36348 -41.84592 -39.78184 -38.39158 -35.83499 -35.50116 -35.15426 -34.52472 -32.35090 -31.49078 -30.34488 -27.34125 -26.46757 -26.43334 -25.70276 -25.36248 -24.20012 -23.11699 -22.54823 -21.13249 -20.24761 -19.52800 -18.65205 -18.18329 -18.06864 -17.38405 -17.04862 -16.57148 -16.50761 -16.00739 -15.46996 -15.16999 -15.02224 -14.91962 -14.58642 -14.45253 -14.03055 -13.86235 -13.59258 -13.48257 -13.23820 -13.02176 -13.00846 -12.77547 -12.63115 -12.47275 -12.35846 -12.23453 -12.14540 -12.10056 -12.03549 -11.80001 -11.76215 -11.33779 -11.29838 -11.04873 -10.56617 -10.20086 -9.69419 -9.55253 -9.37489 -8.15669 -6.26593 -0.24752 0.29546 0.38681 1.37866 1.39542 1.43773 1.50304 1.51542 2.02726 2.20196 2.45795 2.75367 2.86830 3.13464 3.27608 3.75967 3.83968 3.99150 4.03782 4.12320 4.19102 4.21949 4.34271 4.51432 4.55686 4.57488 4.60744 4.66359 4.79435 4.84995 4.88894 5.00166 5.01619 5.04012 5.10034 5.28578 5.36275 5.39558 5.44227 5.51825 5.54208 5.57698 5.67441 5.70296 5.83612 5.94343 6.00965 6.17564 6.74166 6.84271 7.25098 7.38294 7.61977 8.90700 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.005569 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.730305 B = 5026.271657 C = 5572.599195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.039 3.961 3 H 0.033 0.967 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.273 1.273 12 C 0.549 3.451 13 O -0.562 6.562 14 N -0.562 5.562 15 C 0.158 3.842 16 C -0.128 4.128 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.077 4.077 20 C -0.042 4.042 21 C 0.208 3.792 22 N -0.265 5.265 23 N -0.072 5.072 24 N -0.206 5.206 25 H 0.491 0.509 26 N -0.291 5.291 27 C 0.127 3.873 28 C -0.154 4.154 29 C -0.125 4.125 30 C -0.125 4.125 31 H 0.063 0.937 32 H 0.005 0.995 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 8.903 16.651 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 H 0.051 0.949 4 C -0.564 4.564 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.198 1.198 12 C 0.341 3.659 13 O -0.440 6.440 14 N -0.290 5.290 15 C 0.065 3.935 16 C -0.148 4.148 17 C -0.102 4.102 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.047 4.047 21 C -0.071 4.071 22 N -0.137 5.137 23 N -0.068 5.068 24 N -0.056 5.056 25 H 0.349 0.651 26 N -0.144 5.144 27 C 0.025 3.975 28 C -0.192 4.192 29 C -0.163 4.163 30 C -0.164 4.164 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.149 0.851 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.720 7.730 16.638 18.360 hybrid contribution -0.510 -0.472 -1.077 1.282 sum -1.230 7.258 15.562 17.215 Atomic orbital electron populations 1.21375 0.96746 0.98333 0.99015 1.18652 0.93775 0.95779 0.90011 0.94868 1.21154 1.31972 1.12156 0.91147 0.93914 1.25586 0.95101 0.95635 1.01329 1.69987 1.37049 1.23493 1.24226 0.85621 0.78724 0.78524 0.79198 1.20571 1.19533 1.19809 1.21131 0.74137 0.87041 0.83547 1.90427 1.54083 1.15837 1.83609 1.45298 1.63498 1.04630 1.15542 1.17709 0.93000 0.83582 0.99188 1.21544 0.98821 0.94501 0.99903 1.21592 0.98880 0.93697 0.96007 1.21526 0.91807 1.01637 0.97892 1.21330 1.00900 0.89924 0.97643 1.17855 0.89167 0.92445 1.05204 1.23725 0.92392 0.90016 1.00950 1.76461 1.11329 1.10136 1.15805 1.78915 0.98029 1.15692 1.14117 1.47733 1.16514 0.99978 1.41397 0.65057 1.74784 1.05371 1.13836 1.20455 1.22777 0.94866 0.92695 0.87141 1.23330 0.98084 0.97334 1.00486 1.22637 0.96407 0.98460 0.98814 1.23056 0.96792 0.96610 0.99907 0.91824 0.97580 0.95507 0.92618 0.85104 0.81900 0.81257 0.83303 0.86131 0.91178 0.90198 0.87841 0.92113 0.92509 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.15 8.85 71.98 0.64 -4.51 16 2 C 0.04 2.12 2.13 -12.28 -0.03 2.09 16 3 H 0.03 1.84 6.53 -2.39 -0.02 1.83 16 4 C -0.53 -31.57 8.31 25.60 0.21 -31.35 16 5 H 0.04 2.70 7.29 -2.91 -0.02 2.68 16 6 C 0.02 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -52.59 11.41 21.45 0.24 -52.35 16 8 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.55 27.02 4.93 87.66 0.43 27.45 16 13 O -0.56 -30.64 11.84 -3.03 -0.04 -30.67 16 14 N -0.56 -22.09 1.49 -605.50 -0.90 -22.99 16 15 C 0.16 5.49 3.48 38.40 0.13 5.62 16 16 C -0.13 -3.76 9.55 22.37 0.21 -3.55 16 17 C -0.08 -1.79 10.03 22.29 0.22 -1.57 16 18 C -0.11 -2.19 10.03 22.26 0.22 -1.97 16 19 C -0.08 -1.92 9.69 22.46 0.22 -1.70 16 20 C -0.04 -1.36 5.63 -19.93 -0.11 -1.47 16 21 C 0.21 7.05 5.89 137.34 0.81 7.86 16 22 N -0.27 -9.90 6.76 -52.21 -0.35 -10.26 16 23 N -0.07 -2.32 13.47 37.02 0.50 -1.83 16 24 N -0.21 -4.89 7.90 37.02 0.29 -4.60 16 25 H 0.49 6.14 8.96 -347.53 -3.12 3.03 16 26 N -0.29 -8.13 12.08 -52.16 -0.63 -8.76 16 27 C 0.13 4.27 4.28 45.52 0.19 4.47 16 28 C -0.15 -5.16 7.37 31.12 0.23 -4.94 16 29 C -0.13 -3.65 8.08 31.12 0.25 -3.40 16 30 C -0.12 -4.31 5.63 31.12 0.18 -4.14 16 31 H 0.06 3.61 6.30 -2.39 -0.02 3.59 16 32 H 0.00 0.29 8.13 -2.39 -0.02 0.27 16 33 H 0.03 1.27 4.43 -2.39 -0.01 1.26 16 34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 3.10 7.88 -2.91 -0.02 3.08 16 39 H 0.12 3.35 8.05 -2.39 -0.02 3.33 16 40 H 0.07 3.01 5.66 -2.39 -0.01 3.00 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 3.12 5.79 -2.38 -0.01 3.10 16 Total: -1.00 -77.78 359.05 3.34 -74.44 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -2.06 Total: 18.48 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.26 Total: -9.32 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -0.85 Total: -100.78 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -77.78 3.34 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.201 kcal (2) G-P(sol) polarization free energy of solvation -77.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds