Wall clock time and date at job start Wed Apr 1 2020 00:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47697 * 2 1 4 4 C 1.50702 * 109.47286 * 120.00478 * 2 1 3 5 5 H 1.07996 * 120.00327 * 119.99577 * 4 2 1 6 6 C 1.37883 * 119.99729 * 300.00271 * 4 2 1 7 7 N 1.31509 * 120.00105 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99843 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46957 * 90.00577 * 8 6 4 10 10 H 1.48504 * 109.47197 * 210.00317 * 8 6 4 11 11 H 1.48498 * 109.47180 * 330.00577 * 8 6 4 12 12 C 1.50704 * 109.47328 * 240.00088 * 2 1 3 13 13 O 1.21290 * 120.00155 * 277.67769 * 12 2 1 14 14 N 1.34772 * 119.99914 * 97.67203 * 12 2 1 15 15 C 1.39739 * 120.00078 * 4.81708 * 14 12 2 16 16 C 1.38749 * 120.12772 * 85.65983 * 15 14 12 17 17 C 1.38139 * 120.04018 * 179.97438 * 16 15 14 18 18 C 1.38405 * 120.31295 * 0.02562 * 17 16 15 19 19 C 1.38016 * 120.26573 * 0.02562 * 18 17 16 20 20 C 1.39250 * 119.95276 * 359.70129 * 19 18 17 21 21 C 1.48374 * 120.15651 * 180.29697 * 20 19 18 22 22 N 1.34076 * 126.67555 * 179.97438 * 21 20 19 23 23 N 1.28986 * 107.26066 * 179.87144 * 22 21 20 24 24 N 1.28732 * 108.95689 * 0.39654 * 23 22 21 25 25 H 0.96993 * 125.34030 * 179.74650 * 24 23 22 26 26 N 1.28874 * 109.31928 * 359.74777 * 24 23 22 27 27 C 1.46504 * 120.00006 * 184.81721 * 14 12 2 28 28 C 1.53777 * 113.61368 * 42.70068 * 27 14 12 29 29 C 1.53785 * 87.07989 * 220.01835 * 28 27 14 30 30 C 1.53777 * 113.61371 * 305.20120 * 27 14 12 31 31 H 1.08995 * 109.47012 * 306.17170 * 1 2 3 32 32 H 1.08995 * 109.47253 * 186.16582 * 1 2 3 33 33 H 1.08999 * 109.46783 * 66.16736 * 1 2 3 34 34 H 0.96998 * 120.00109 * 179.97438 * 7 6 4 35 35 H 1.07993 * 119.98070 * 0.02562 * 16 15 14 36 36 H 1.07996 * 119.84233 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.86421 * 180.02562 * 18 17 16 38 38 H 1.08003 * 120.02009 * 179.97438 * 19 18 17 39 39 H 1.09002 * 112.84755 * 174.01043 * 27 14 12 40 40 H 1.09001 * 113.61563 * 334.56648 * 28 27 14 41 41 H 1.09002 * 113.61738 * 105.47437 * 28 27 14 42 42 H 1.09000 * 113.61534 * 270.88211 * 29 28 27 43 43 H 1.09000 * 113.61406 * 139.98042 * 29 28 27 44 44 H 1.09004 * 113.61739 * 254.52845 * 30 27 14 45 45 H 1.09001 * 113.61486 * 25.34908 * 30 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.1023 -1.9212 -1.2457 14 7 2.4039 -0.0003 -2.3140 15 6 2.4192 1.3961 -2.2627 16 6 3.5353 2.0630 -1.7783 17 6 3.5487 3.4434 -1.7289 18 6 2.4517 4.1685 -2.1606 19 6 1.3344 3.5182 -2.6439 20 6 1.3112 2.1272 -2.7040 21 6 0.1149 1.4237 -3.2288 22 7 -0.0476 0.0979 -3.3452 23 7 -1.2221 -0.1018 -3.8395 24 7 -1.7896 1.0358 -4.0420 25 1 -2.6775 1.1620 -4.4113 26 7 -0.9928 1.9807 -3.6769 27 6 2.7918 -0.6924 -3.5457 28 6 1.8757 -1.8749 -3.9024 29 6 3.1472 -2.6316 -4.3214 30 6 3.9142 -1.7242 -3.3452 31 1 -0.3633 0.6065 0.8295 32 1 -0.3633 -1.0217 0.1104 33 1 -0.3633 0.4153 -0.9400 34 1 1.9031 -0.5282 4.4375 35 1 4.3944 1.5025 -1.4404 36 1 4.4193 3.9592 -1.3516 37 1 2.4702 5.2475 -2.1192 38 1 0.4805 4.0880 -2.9794 39 1 2.9695 -0.0097 -4.3767 40 1 1.3714 -2.3120 -3.0406 41 1 1.1979 -1.6678 -4.7307 42 1 3.4214 -2.4802 -5.3655 43 1 3.1455 -3.6823 -4.0313 44 1 4.8822 -1.3955 -3.7235 45 1 3.9682 -2.1191 -2.3306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:17 Heat of formation + Delta-G solvation = 165.252552 kcal Electronic energy + Delta-G solvation = -31862.727380 eV Core-core repulsion = 27885.273675 eV Total energy + Delta-G solvation = -3977.453705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.34061 -40.55052 -38.70119 -36.94861 -34.57084 -34.02922 -33.57809 -33.51115 -31.07094 -30.53994 -29.28946 -25.39890 -25.16629 -24.95611 -24.64374 -24.31223 -22.92706 -21.79589 -21.44329 -19.80743 -19.22212 -18.18455 -17.11967 -17.02158 -16.72377 -16.37209 -15.59715 -15.34806 -14.91057 -14.80167 -14.31085 -13.98059 -13.66714 -13.57431 -13.22428 -13.01473 -12.75868 -12.71232 -12.38470 -12.21029 -12.08187 -11.80014 -11.61598 -11.43852 -11.40692 -11.19473 -10.95801 -10.94273 -10.78777 -10.72698 -10.46207 -10.22382 -10.09587 -10.02769 -9.58727 -9.14630 -8.92767 -8.68609 -8.54917 -8.25698 -8.07280 -6.04767 -4.03755 0.71812 1.30583 1.33719 2.28878 2.47164 3.25932 3.34992 3.37336 3.49687 3.61464 3.73831 3.80830 4.28558 4.40312 4.96238 4.99668 5.01151 5.12623 5.19866 5.23230 5.26675 5.38722 5.42356 5.44121 5.53307 5.60413 5.80091 5.89581 5.97380 6.05465 6.24318 6.25616 6.29664 6.36453 6.38440 6.42848 6.46538 6.50304 6.55669 6.60267 6.68048 6.70745 6.84161 6.92679 7.23749 7.33199 7.60838 8.14885 8.27905 8.55139 9.06534 9.14587 9.55256 11.08195 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.006219 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.461186 B = 4501.363237 C = 5161.870233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.000 4.000 3 H 0.042 0.958 4 C -0.499 4.499 5 H 0.086 0.914 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.878 3.122 9 H -0.280 1.280 10 H -0.294 1.294 11 H -0.265 1.265 12 C 0.554 3.446 13 O -0.517 6.517 14 N -0.573 5.573 15 C 0.193 3.807 16 C -0.114 4.114 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.077 4.077 20 C -0.028 4.028 21 C 0.222 3.778 22 N -0.233 5.233 23 N -0.055 5.055 24 N -0.236 5.236 25 H 0.471 0.529 26 N -0.300 5.300 27 C 0.135 3.865 28 C -0.128 4.128 29 C -0.142 4.142 30 C -0.149 4.149 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 10.398 -18.201 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 H 0.060 0.940 4 C -0.537 4.537 5 H 0.104 0.896 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.709 3.291 9 H -0.207 1.207 10 H -0.222 1.222 11 H -0.190 1.190 12 C 0.346 3.654 13 O -0.390 6.390 14 N -0.303 5.303 15 C 0.099 3.901 16 C -0.133 4.133 17 C -0.109 4.109 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.033 4.033 21 C -0.057 4.057 22 N -0.106 5.106 23 N -0.050 5.050 24 N -0.080 5.080 25 H 0.325 0.675 26 N -0.152 5.152 27 C 0.033 3.967 28 C -0.166 4.166 29 C -0.180 4.180 30 C -0.187 4.187 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.692 9.124 -18.163 20.503 hybrid contribution -1.117 1.492 0.145 1.869 sum -3.809 10.615 -18.018 21.257 Atomic orbital electron populations 1.21974 0.97273 1.01606 0.98127 1.19311 0.93172 0.97152 0.92576 0.94030 1.20798 1.32145 1.13466 0.87315 0.89620 1.24898 0.95629 0.96441 0.95733 1.69873 1.45509 1.40082 0.97832 0.86983 0.80917 0.84178 0.77070 1.20704 1.22187 1.19027 1.21052 0.74305 0.87533 0.82503 1.90496 1.52500 1.14312 1.81741 1.45557 1.69040 1.02277 1.13465 1.17461 0.92014 0.84163 0.96422 1.21496 0.98092 0.94629 0.99100 1.21237 0.98623 0.93526 0.97515 1.21071 0.93242 1.00205 0.99915 1.21036 0.98733 0.91927 0.98067 1.17660 0.89345 0.92533 1.03725 1.23498 0.93649 0.88301 1.00252 1.76466 1.06417 1.14066 1.13626 1.79004 1.02984 1.09733 1.13273 1.47698 1.17325 1.01552 1.41454 0.67511 1.74851 1.02753 1.18804 1.18821 1.22481 0.96481 0.92167 0.85619 1.23275 0.95851 0.95403 1.02069 1.22651 0.98076 0.99365 0.97944 1.23401 0.96422 0.96948 1.01939 0.93862 0.92088 0.95771 0.92585 0.84445 0.85054 0.85191 0.84910 0.89045 0.86868 0.92808 0.91361 0.91337 0.92479 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.57 37.16 0.32 -2.81 16 2 C 0.00 -0.01 1.83 -92.92 -0.17 -0.18 16 3 H 0.04 1.01 5.35 -51.93 -0.28 0.73 16 4 C -0.50 -14.57 8.90 -34.44 -0.31 -14.87 16 5 H 0.09 2.80 7.56 -52.49 -0.40 2.40 16 6 C 0.07 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -27.75 13.96 55.43 0.77 -26.98 16 8 Si 0.88 22.11 24.31 -169.99 -4.13 17.98 16 9 H -0.28 -6.97 6.93 56.52 0.39 -6.57 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.32 6.53 56.52 0.37 -5.96 16 12 C 0.55 12.53 5.56 -10.99 -0.06 12.47 16 13 O -0.52 -12.93 11.90 5.55 0.07 -12.87 16 14 N -0.57 -10.51 1.43 -105.32 -0.15 -10.66 16 15 C 0.19 3.19 3.46 -83.45 -0.29 2.90 16 16 C -0.11 -1.65 9.47 -39.43 -0.37 -2.03 16 17 C -0.09 -1.04 10.03 -39.56 -0.40 -1.44 16 18 C -0.13 -1.37 10.03 -39.60 -0.40 -1.77 16 19 C -0.08 -0.96 9.69 -39.29 -0.38 -1.34 16 20 C -0.03 -0.42 5.89 -104.73 -0.62 -1.04 16 21 C 0.22 3.47 6.70 -156.29 -1.05 2.42 16 22 N -0.23 -3.88 7.07 32.14 0.23 -3.65 16 23 N -0.05 -0.78 13.47 60.35 0.81 0.04 16 24 N -0.24 -2.54 7.90 60.35 0.48 -2.07 16 25 H 0.47 2.64 8.96 -340.36 -3.05 -0.41 16 26 N -0.30 -3.92 12.08 32.16 0.39 -3.53 16 27 C 0.14 2.18 3.82 -67.12 -0.26 1.92 16 28 C -0.13 -2.12 5.61 -25.92 -0.15 -2.26 16 29 C -0.14 -2.05 8.08 -25.92 -0.21 -2.26 16 30 C -0.15 -2.36 7.44 -25.92 -0.19 -2.55 16 31 H 0.04 1.03 3.46 -51.93 -0.18 0.85 16 32 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.02 0.51 5.86 -51.93 -0.30 0.20 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.42 7.88 -52.48 -0.41 1.00 16 39 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.11 2.30 5.62 -51.93 -0.29 2.00 16 41 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.98 6.31 -51.93 -0.33 1.66 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -35.22 355.17 -9.01 -44.23 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.21 Total: 2.91 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -4.62 Total: -10.75 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 2.53 Total: -46.85 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.22 -9.01 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.482 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds