Wall clock time and date at job start Wed Apr 1 2020 00:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47697 * 2 1 4 4 C 1.50702 * 109.47286 * 120.00478 * 2 1 3 5 5 H 1.07996 * 120.00327 * 119.99577 * 4 2 1 6 6 C 1.37883 * 119.99729 * 300.00271 * 4 2 1 7 7 N 1.31509 * 120.00105 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99843 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46957 * 90.00577 * 8 6 4 10 10 H 1.48504 * 109.47197 * 210.00317 * 8 6 4 11 11 H 1.48498 * 109.47180 * 330.00577 * 8 6 4 12 12 C 1.50704 * 109.47328 * 240.00088 * 2 1 3 13 13 O 1.21290 * 120.00155 * 277.67769 * 12 2 1 14 14 N 1.34772 * 119.99914 * 97.67203 * 12 2 1 15 15 C 1.39739 * 120.00078 * 4.81708 * 14 12 2 16 16 C 1.38749 * 120.12772 * 85.65983 * 15 14 12 17 17 C 1.38139 * 120.04018 * 179.97438 * 16 15 14 18 18 C 1.38405 * 120.31295 * 0.02562 * 17 16 15 19 19 C 1.38016 * 120.26573 * 0.02562 * 18 17 16 20 20 C 1.39250 * 119.95276 * 359.70129 * 19 18 17 21 21 C 1.48374 * 120.15651 * 180.29697 * 20 19 18 22 22 N 1.34076 * 126.67555 * 179.97438 * 21 20 19 23 23 N 1.28986 * 107.26066 * 179.87144 * 22 21 20 24 24 N 1.28732 * 108.95689 * 0.39654 * 23 22 21 25 25 H 0.96993 * 125.34030 * 179.74650 * 24 23 22 26 26 N 1.28874 * 109.31928 * 359.74777 * 24 23 22 27 27 C 1.46504 * 120.00006 * 184.81721 * 14 12 2 28 28 C 1.53777 * 113.61368 * 42.70068 * 27 14 12 29 29 C 1.53785 * 87.07989 * 220.01835 * 28 27 14 30 30 C 1.53777 * 113.61371 * 305.20120 * 27 14 12 31 31 H 1.08995 * 109.47012 * 306.17170 * 1 2 3 32 32 H 1.08995 * 109.47253 * 186.16582 * 1 2 3 33 33 H 1.08999 * 109.46783 * 66.16736 * 1 2 3 34 34 H 0.96998 * 120.00109 * 179.97438 * 7 6 4 35 35 H 1.07993 * 119.98070 * 0.02562 * 16 15 14 36 36 H 1.07996 * 119.84233 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.86421 * 180.02562 * 18 17 16 38 38 H 1.08003 * 120.02009 * 179.97438 * 19 18 17 39 39 H 1.09002 * 112.84755 * 174.01043 * 27 14 12 40 40 H 1.09001 * 113.61563 * 334.56648 * 28 27 14 41 41 H 1.09002 * 113.61738 * 105.47437 * 28 27 14 42 42 H 1.09000 * 113.61534 * 270.88211 * 29 28 27 43 43 H 1.09000 * 113.61406 * 139.98042 * 29 28 27 44 44 H 1.09004 * 113.61739 * 254.52845 * 30 27 14 45 45 H 1.09001 * 113.61486 * 25.34908 * 30 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1371 -0.8598 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1771 1.4923 12 6 2.0324 -0.7104 -1.2305 13 8 2.1023 -1.9212 -1.2457 14 7 2.4039 -0.0003 -2.3140 15 6 2.4192 1.3961 -2.2627 16 6 3.5353 2.0630 -1.7783 17 6 3.5487 3.4434 -1.7289 18 6 2.4517 4.1685 -2.1606 19 6 1.3344 3.5182 -2.6439 20 6 1.3112 2.1272 -2.7040 21 6 0.1149 1.4237 -3.2288 22 7 -0.0476 0.0979 -3.3452 23 7 -1.2221 -0.1018 -3.8395 24 7 -1.7896 1.0358 -4.0420 25 1 -2.6775 1.1620 -4.4113 26 7 -0.9928 1.9807 -3.6769 27 6 2.7918 -0.6924 -3.5457 28 6 1.8757 -1.8749 -3.9024 29 6 3.1472 -2.6316 -4.3214 30 6 3.9142 -1.7242 -3.3452 31 1 -0.3633 0.6065 0.8295 32 1 -0.3633 -1.0217 0.1104 33 1 -0.3633 0.4153 -0.9400 34 1 1.9031 -0.5282 4.4375 35 1 4.3944 1.5025 -1.4404 36 1 4.4193 3.9592 -1.3516 37 1 2.4702 5.2475 -2.1192 38 1 0.4805 4.0880 -2.9794 39 1 2.9695 -0.0097 -4.3767 40 1 1.3714 -2.3120 -3.0406 41 1 1.1979 -1.6678 -4.7307 42 1 3.4214 -2.4802 -5.3655 43 1 3.1455 -3.6823 -4.0313 44 1 4.8822 -1.3955 -3.7235 45 1 3.9682 -2.1191 -2.3306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:17 Heat of formation + Delta-G solvation = 141.863484 kcal Electronic energy + Delta-G solvation = -31863.741606 eV Core-core repulsion = 27885.273675 eV Total energy + Delta-G solvation = -3978.467931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.38105 -41.94419 -39.84743 -38.49867 -35.91177 -35.54293 -35.18311 -34.55095 -33.20823 -31.52889 -30.40494 -27.31668 -26.63782 -26.47371 -25.70561 -25.41211 -24.30701 -23.21800 -22.54262 -21.14945 -20.28875 -19.54989 -18.85904 -18.49723 -18.09425 -17.43393 -17.16454 -16.85284 -16.44744 -16.02461 -15.56797 -15.38389 -15.04680 -14.98257 -14.70620 -14.55214 -14.33147 -14.07584 -13.82922 -13.65462 -13.49338 -13.22102 -13.15305 -12.81859 -12.66492 -12.50352 -12.32895 -12.28347 -12.22074 -12.04274 -11.90039 -11.86873 -11.55884 -11.35092 -11.31521 -11.29243 -10.82363 -10.30814 -9.75514 -9.65308 -9.43703 -8.32517 -6.38323 -0.29628 0.26635 0.33471 1.25760 1.29795 1.39688 1.41895 1.48756 1.88547 2.11989 2.27672 2.72185 2.80487 3.01008 3.23937 3.67274 3.81301 3.91074 4.01330 4.06118 4.10524 4.19113 4.28458 4.32449 4.38749 4.49243 4.51664 4.55394 4.58421 4.63384 4.73170 4.82467 4.86546 5.01233 5.01961 5.08680 5.21751 5.26249 5.35704 5.38093 5.46375 5.47066 5.51840 5.56591 5.68243 5.89362 5.94826 6.20544 6.61235 6.77612 7.22174 7.22594 7.49538 8.84913 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.006219 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.461186 B = 4501.363237 C = 5161.870233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 H 0.053 0.947 4 C -0.510 4.510 5 H 0.028 0.972 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.237 1.237 12 C 0.553 3.447 13 O -0.557 6.557 14 N -0.558 5.558 15 C 0.153 3.847 16 C -0.130 4.130 17 C -0.083 4.083 18 C -0.109 4.109 19 C -0.075 4.075 20 C -0.042 4.042 21 C 0.205 3.795 22 N -0.269 5.269 23 N -0.069 5.069 24 N -0.204 5.204 25 H 0.492 0.508 26 N -0.287 5.287 27 C 0.136 3.864 28 C -0.125 4.125 29 C -0.128 4.128 30 C -0.151 4.151 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.269 0.731 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 14.898 -20.401 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.017 4.017 3 H 0.071 0.929 4 C -0.549 4.549 5 H 0.047 0.953 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.769 3.231 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.161 1.161 12 C 0.345 3.655 13 O -0.435 6.435 14 N -0.286 5.286 15 C 0.060 3.940 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.095 4.095 20 C -0.047 4.047 21 C -0.075 4.075 22 N -0.141 5.141 23 N -0.064 5.064 24 N -0.054 5.054 25 H 0.350 0.650 26 N -0.141 5.141 27 C 0.034 3.966 28 C -0.164 4.164 29 C -0.166 4.166 30 C -0.189 4.189 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.172 0.828 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.659 13.648 -20.418 24.830 hybrid contribution -0.807 0.117 0.761 1.116 sum -4.466 13.765 -19.657 24.409 Atomic orbital electron populations 1.21823 0.96368 1.00456 0.99359 1.19137 0.93783 0.97083 0.91735 0.92890 1.20886 1.31770 1.12238 0.89980 0.95321 1.25795 0.97002 1.00113 0.94895 1.70033 1.47265 1.42357 0.98632 0.85916 0.78797 0.80082 0.78301 1.19837 1.21197 1.16085 1.20640 0.74636 0.86962 0.83304 1.90488 1.54441 1.15893 1.82644 1.45244 1.67224 1.03502 1.12622 1.17739 0.93803 0.82878 0.99578 1.21577 0.97411 0.96218 0.99725 1.21617 1.00096 0.92156 0.96339 1.21568 0.91738 1.02180 0.97208 1.21373 1.00042 0.90707 0.97412 1.17820 0.88807 0.93732 1.04293 1.23717 0.94532 0.88134 1.01105 1.76474 1.07503 1.15135 1.15002 1.78953 1.02863 1.10688 1.13888 1.47778 1.17746 1.00513 1.39396 0.64954 1.74808 1.02213 1.18730 1.18298 1.22685 0.96058 0.92381 0.85446 1.23061 0.96548 0.96036 1.00741 1.22662 0.96150 0.98408 0.99371 1.23279 0.97988 0.97510 1.00141 0.93647 0.94302 0.93442 0.92204 0.85502 0.81951 0.81036 0.82810 0.86382 0.91027 0.91870 0.87799 0.92189 0.89926 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.57 71.98 0.62 -5.19 16 2 C 0.00 0.22 1.83 -12.28 -0.02 0.20 16 3 H 0.05 2.55 5.35 -2.39 -0.01 2.54 16 4 C -0.51 -31.46 8.90 25.60 0.23 -31.23 16 5 H 0.03 2.04 7.56 -2.91 -0.02 2.01 16 6 C 0.02 1.18 5.45 84.66 0.46 1.64 16 7 N -0.94 -60.84 13.96 21.45 0.30 -60.54 16 8 Si 0.94 45.19 24.31 68.60 1.67 46.86 16 9 H -0.27 -12.66 6.93 99.48 0.69 -11.97 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 12 C 0.55 26.29 5.56 87.66 0.49 26.78 16 13 O -0.56 -30.28 11.90 -3.06 -0.04 -30.32 16 14 N -0.56 -20.81 1.43 -605.50 -0.87 -21.68 16 15 C 0.15 4.87 3.46 38.40 0.13 5.00 16 16 C -0.13 -3.57 9.47 22.37 0.21 -3.36 16 17 C -0.08 -1.60 10.03 22.29 0.22 -1.38 16 18 C -0.11 -1.79 10.03 22.26 0.22 -1.57 16 19 C -0.07 -1.54 9.69 22.46 0.22 -1.32 16 20 C -0.04 -1.18 5.89 -19.93 -0.12 -1.29 16 21 C 0.20 5.97 6.70 137.34 0.92 6.89 16 22 N -0.27 -8.79 7.07 -52.22 -0.37 -9.15 16 23 N -0.07 -1.89 13.47 37.02 0.50 -1.39 16 24 N -0.20 -3.91 7.90 37.02 0.29 -3.62 16 25 H 0.49 4.11 8.96 -347.54 -3.12 1.00 16 26 N -0.29 -6.66 12.08 -52.17 -0.63 -7.29 16 27 C 0.14 4.40 3.82 45.51 0.17 4.58 16 28 C -0.13 -4.25 5.61 31.12 0.17 -4.08 16 29 C -0.13 -3.68 8.08 31.12 0.25 -3.43 16 30 C -0.15 -4.90 7.44 31.12 0.23 -4.67 16 31 H 0.05 2.10 3.46 -2.39 -0.01 2.09 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 2.00 5.86 -2.39 -0.01 1.99 16 34 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.15 2.48 7.88 -2.91 -0.02 2.46 16 39 H 0.12 3.19 8.05 -2.39 -0.02 3.17 16 40 H 0.07 3.10 5.62 -2.39 -0.01 3.09 16 41 H 0.06 1.97 7.84 -2.39 -0.02 1.95 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.48 6.31 -2.39 -0.02 2.46 16 Total: -1.00 -83.45 355.17 3.13 -80.32 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -2.13 Total: 19.24 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.42 Total: -12.43 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -0.78 Total: -103.67 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.04 Total: -30.32 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.86 kcal Total: -83.45 3.13 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.182 kcal (2) G-P(sol) polarization free energy of solvation -83.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds