Wall clock time and date at job start Wed Apr 1 2020 00:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47370 * 2 1 4 4 C 1.50694 * 109.47191 * 239.99437 * 2 1 3 5 5 H 1.07997 * 120.00537 * 274.89864 * 4 2 1 6 6 C 1.37886 * 119.99762 * 94.90220 * 4 2 1 7 7 N 1.31509 * 120.00288 * 184.82960 * 6 4 2 8 8 Si 1.86806 * 119.99753 * 4.83109 * 6 4 2 9 9 H 1.48500 * 109.46989 * 94.80565 * 8 6 4 10 10 H 1.48495 * 109.46663 * 214.80598 * 8 6 4 11 11 H 1.48504 * 109.47141 * 334.80410 * 8 6 4 12 12 N 1.46501 * 109.46848 * 119.99613 * 2 1 3 13 13 C 1.46501 * 119.99692 * 60.00353 * 12 2 1 14 14 C 1.34778 * 120.00415 * 239.99602 * 12 2 1 15 15 O 1.21278 * 119.99642 * 5.59593 * 14 12 2 16 16 C 1.50695 * 120.00091 * 185.59022 * 14 12 2 17 17 C 1.50695 * 115.55296 * 66.00172 * 16 14 12 18 18 C 1.38334 * 119.94099 * 209.54473 * 17 16 14 19 19 C 1.38293 * 120.23349 * 180.25183 * 18 17 16 20 20 C 1.38048 * 120.11998 * 359.49141 * 19 18 17 21 21 C 1.39279 * 119.87762 * 0.48332 * 20 19 18 22 22 C 1.48466 * 120.11782 * 179.79138 * 21 20 19 23 23 N 1.34044 * 126.67623 * 179.66237 * 22 21 20 24 24 N 1.28987 * 107.27014 * 179.83579 * 23 22 21 25 25 N 1.28737 * 108.94229 * 0.43860 * 24 23 22 26 26 H 0.96996 * 125.34067 * 179.74449 * 25 24 23 27 27 N 1.28875 * 109.31455 * 359.71858 * 25 24 23 28 28 C 1.38009 * 119.93900 * 29.51948 * 17 16 14 29 29 C 1.53002 * 117.49737 * 211.67055 * 16 14 12 30 30 C 1.53007 * 117.49820 * 280.32790 * 16 14 12 31 31 H 1.09002 * 109.47412 * 184.95381 * 1 2 3 32 32 H 1.09008 * 109.47300 * 304.95695 * 1 2 3 33 33 H 1.09009 * 109.47262 * 64.95423 * 1 2 3 34 34 H 0.97000 * 120.00630 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47117 * 264.75567 * 13 12 2 36 36 H 1.08994 * 109.47454 * 24.75744 * 13 12 2 37 37 H 1.09001 * 109.47128 * 144.76183 * 13 12 2 38 38 H 1.08002 * 119.88447 * 359.97071 * 18 17 16 39 39 H 1.08004 * 119.94045 * 179.71626 * 19 18 17 40 40 H 1.08002 * 120.06251 * 180.27869 * 20 19 18 41 41 H 1.07994 * 120.05982 * 0.02562 * 28 17 16 42 42 H 1.08997 * 117.50078 * 215.00617 * 29 16 14 43 43 H 1.09004 * 117.49884 * 0.02562 * 29 16 14 44 44 H 1.09001 * 117.49588 * 359.97438 * 30 16 14 45 45 H 1.08996 * 117.49821 * 145.00283 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1370 -1.7854 -1.2283 6 6 2.3583 0.0118 -2.3587 7 7 2.7056 -0.6135 -3.4623 8 14 2.3066 1.8788 -2.3198 9 1 3.6619 2.4052 -2.0178 10 1 1.8604 2.3891 -3.6410 11 1 1.3565 2.3259 -1.2698 12 7 2.0182 -0.6905 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0029 1.1509 1.9454 16 6 3.3988 -0.7776 3.2468 17 6 4.4242 -1.8223 2.8887 18 6 4.5920 -2.9311 3.6986 19 6 5.5347 -3.8909 3.3785 20 6 6.3065 -3.7521 2.2424 21 6 6.1412 -2.6379 1.4232 22 6 6.9716 -2.4809 0.2025 23 7 6.9188 -1.4710 -0.6773 24 7 7.8012 -1.7095 -1.5874 25 7 8.3899 -2.8220 -1.3173 26 1 9.0921 -3.2286 -1.8487 27 7 7.9002 -3.3105 -0.2299 28 6 5.1937 -1.6712 1.7531 29 6 3.6062 -0.0014 4.5489 30 6 2.4996 -1.0547 4.4534 31 1 -0.3634 -1.0238 0.0887 32 1 -0.3634 0.5888 0.8423 33 1 -0.3634 0.4351 -0.9311 34 1 2.9346 -0.1055 -4.2562 35 1 0.7901 -2.1448 2.0771 36 1 1.4386 -2.5731 0.4759 37 1 2.5007 -2.6051 1.9038 38 1 3.9877 -3.0454 4.5865 39 1 5.6650 -4.7525 4.0167 40 1 7.0393 -4.5045 1.9909 41 1 5.0619 -0.8052 1.1216 42 1 4.4843 -0.2463 5.1465 43 1 3.3041 1.0459 4.5642 44 1 1.4700 -0.6999 4.4057 45 1 2.6496 -1.9925 4.9880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:05 Heat of formation + Delta-G solvation = 152.750188 kcal Electronic energy + Delta-G solvation = -30473.312520 eV Core-core repulsion = 26495.316672 eV Total energy + Delta-G solvation = -3977.995848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.24603 -40.39931 -38.61124 -36.48740 -35.25752 -34.18331 -33.31567 -32.53247 -31.01486 -30.26737 -30.11448 -26.18482 -25.26946 -25.01562 -24.40567 -23.92590 -22.51989 -22.30337 -21.23729 -19.88634 -19.01358 -18.14494 -17.35821 -16.93574 -16.88414 -15.98126 -15.65666 -15.31938 -15.05709 -14.63543 -14.18101 -14.07902 -13.79326 -13.45578 -13.26456 -13.08286 -12.57979 -12.41138 -12.28761 -12.19356 -12.12027 -11.75347 -11.69063 -11.37917 -11.24832 -11.22210 -11.14411 -11.00151 -10.92025 -10.86411 -10.69921 -10.48203 -10.44288 -10.30226 -9.66058 -9.21636 -8.98047 -8.67990 -8.51478 -8.45669 -7.59363 -6.08238 -4.09521 0.79066 1.35994 1.41773 2.38192 2.50616 3.17952 3.37300 3.46636 3.53224 3.64122 3.81023 3.83253 4.12851 4.33759 4.46906 4.61183 4.83365 4.91167 5.02270 5.08848 5.11698 5.28676 5.35298 5.47085 5.57774 5.64711 5.66809 5.72770 5.88887 5.90714 5.95810 6.05030 6.09300 6.17390 6.32490 6.39291 6.44509 6.47908 6.50358 6.56082 6.60478 6.65934 6.91555 6.99854 7.13887 7.55477 7.71421 8.21256 8.36169 8.57406 8.92646 8.99208 9.54956 11.03744 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.006110 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.822091 B = 4581.641817 C = 7069.722915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.220 3.780 3 H 0.067 0.933 4 C -0.522 4.522 5 H 0.077 0.923 6 C 0.084 3.916 7 N -0.889 5.889 8 Si 0.868 3.132 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.260 1.260 12 N -0.577 5.577 13 C 0.083 3.917 14 C 0.542 3.458 15 O -0.551 6.551 16 C -0.115 4.115 17 C -0.037 4.037 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.010 4.010 22 C 0.219 3.781 23 N -0.246 5.246 24 N -0.045 5.045 25 N -0.234 5.234 26 H 0.472 0.528 27 N -0.301 5.301 28 C -0.053 4.053 29 C -0.137 4.137 30 C -0.158 4.158 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 -8.879 14.394 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.120 3.880 3 H 0.085 0.915 4 C -0.560 4.560 5 H 0.095 0.905 6 C -0.120 4.120 7 N -0.526 5.526 8 Si 0.695 3.305 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.306 5.306 13 C -0.061 4.061 14 C 0.327 3.673 15 O -0.430 6.430 16 C -0.118 4.118 17 C -0.038 4.038 18 C -0.120 4.120 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.013 4.013 22 C -0.060 4.060 23 N -0.119 5.119 24 N -0.041 5.041 25 N -0.079 5.079 26 H 0.326 0.674 27 N -0.153 5.153 28 C -0.073 4.073 29 C -0.174 4.174 30 C -0.195 4.195 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.424 -7.922 13.499 17.323 hybrid contribution 0.356 0.242 -0.383 0.576 sum 7.780 -7.679 13.117 17.075 Atomic orbital electron populations 1.22208 0.98447 1.00132 0.99586 1.19437 0.90801 0.95153 0.82648 0.91509 1.21051 1.44758 0.95558 0.94671 0.90536 1.24896 0.93658 0.98219 0.95217 1.69879 1.45115 1.35903 1.01669 0.86964 0.79725 0.86579 0.77217 1.19695 1.21373 1.18462 1.48214 1.48309 1.11672 1.22439 1.21657 0.99151 0.83143 1.02101 1.19187 0.79128 0.86652 0.82302 1.90642 1.61697 1.15344 1.75299 1.20176 1.00513 1.00548 0.90612 1.18613 0.95735 0.94319 0.95105 1.21138 0.98051 0.93269 0.99512 1.20938 0.96463 0.99430 0.97174 1.21111 0.99235 0.96242 0.93940 1.17152 0.96508 0.96940 0.90686 1.23657 0.95547 0.89150 0.97694 1.76306 1.12977 1.22383 1.00205 1.79020 1.04047 1.01342 1.19659 1.47717 1.28711 1.14944 1.16519 0.67415 1.74802 1.13915 1.25240 1.01346 1.21139 0.92163 0.98455 0.95558 1.23055 1.00232 0.98215 0.95933 1.23159 0.96618 1.01037 0.98660 0.93450 0.95658 0.92479 0.92545 0.94058 0.90195 0.92187 0.85323 0.85272 0.85122 0.84158 0.88015 0.87539 0.88063 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.25 37.15 0.34 -2.77 16 2 C 0.22 5.39 2.26 -69.09 -0.16 5.23 16 3 H 0.07 1.81 3.84 -51.93 -0.20 1.61 16 4 C -0.52 -14.55 8.69 -34.44 -0.30 -14.85 16 5 H 0.08 2.27 6.90 -52.49 -0.36 1.91 16 6 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 7 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 8 Si 0.87 22.77 27.31 -169.99 -4.64 18.13 16 9 H -0.27 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.61 6.37 56.52 0.36 -6.25 16 12 N -0.58 -12.16 2.75 -175.27 -0.48 -12.65 16 13 C 0.08 1.44 9.00 59.85 0.54 1.98 16 14 C 0.54 11.19 5.74 -10.99 -0.06 11.12 16 15 O -0.55 -13.48 16.05 5.56 0.09 -13.39 16 16 C -0.12 -1.77 1.37 -156.81 -0.22 -1.98 16 17 C -0.04 -0.55 3.55 -104.67 -0.37 -0.92 16 18 C -0.10 -1.12 9.30 -39.53 -0.37 -1.49 16 19 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16 20 C -0.09 -1.05 9.70 -39.26 -0.38 -1.43 16 21 C -0.01 -0.15 5.88 -104.89 -0.62 -0.77 16 22 C 0.22 3.79 7.94 -156.30 -1.24 2.55 16 23 N -0.25 -4.92 12.23 32.16 0.39 -4.53 16 24 N -0.05 -0.77 13.47 60.35 0.81 0.04 16 25 N -0.23 -2.93 7.90 60.35 0.48 -2.45 16 26 H 0.47 3.27 8.96 -340.37 -3.05 0.21 16 27 N -0.30 -4.32 12.08 32.17 0.39 -3.93 16 28 C -0.05 -0.93 8.97 -39.26 -0.35 -1.28 16 29 C -0.14 -1.74 9.73 -26.69 -0.26 -2.00 16 30 C -0.16 -1.79 9.42 -26.69 -0.25 -2.04 16 31 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 32 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.51 6.62 -51.93 -0.34 1.16 16 37 H 0.06 0.94 5.38 -51.93 -0.28 0.66 16 38 H 0.13 1.07 5.94 -52.49 -0.31 0.76 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.13 1.40 7.88 -52.49 -0.41 0.98 16 41 H 0.14 3.00 7.15 -52.49 -0.38 2.63 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.11 1.47 8.00 -51.93 -0.42 1.05 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 0.89 6.10 -51.93 -0.32 0.57 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -36.34 374.01 -8.91 -45.25 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.17 Total: 2.32 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -4.19 Total: -7.95 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 2.36 Total: -50.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.64 Total: 18.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.34 -8.91 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.004 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds