Wall clock time and date at job start Wed Apr 1 2020 00:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46761 * 2 1 4 4 C 1.50698 * 109.47445 * 239.99494 * 2 1 3 5 5 H 1.08001 * 119.99913 * 239.99845 * 4 2 1 6 6 C 1.37876 * 120.00050 * 60.00101 * 4 2 1 7 7 N 1.31521 * 119.99853 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00304 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46934 * 89.99504 * 8 6 4 10 10 H 1.48493 * 109.47085 * 210.00039 * 8 6 4 11 11 H 1.48505 * 109.46682 * 329.99909 * 8 6 4 12 12 C 1.50701 * 109.47079 * 119.99242 * 2 1 3 13 13 O 1.21286 * 119.99747 * 98.51268 * 12 2 1 14 14 N 1.34781 * 120.00016 * 278.51940 * 12 2 1 15 15 C 1.39943 * 119.99466 * 186.65632 * 14 12 2 16 16 C 1.38966 * 120.00701 * 188.14161 * 15 14 12 17 17 C 1.38174 * 120.16366 * 180.02562 * 16 15 14 18 18 C 1.38092 * 120.18849 * 359.97438 * 17 16 15 19 19 C 1.39312 * 120.02834 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.08493 * 179.97438 * 19 18 17 21 21 N 1.34043 * 126.67555 * 179.68396 * 20 19 18 22 22 N 1.28991 * 107.27047 * 179.83545 * 21 20 19 23 23 N 1.28729 * 108.94125 * 0.43912 * 22 21 20 24 24 H 0.96995 * 125.34236 * 179.75316 * 23 22 21 25 25 N 1.28874 * 109.31700 * 359.72245 * 23 22 21 26 26 C 1.38656 * 120.01761 * 8.16200 * 15 14 12 27 27 C 1.46499 * 120.00214 * 6.65107 * 14 12 2 28 28 C 1.53774 * 113.61263 * 221.39279 * 27 14 12 29 29 C 1.53787 * 87.08032 * 220.01940 * 28 27 14 30 30 C 1.53780 * 87.08179 * 25.43305 * 29 28 27 31 31 H 1.08997 * 109.46945 * 173.40606 * 1 2 3 32 32 H 1.08992 * 109.47222 * 293.40865 * 1 2 3 33 33 H 1.08997 * 109.46760 * 53.40774 * 1 2 3 34 34 H 0.96993 * 119.99789 * 180.02562 * 7 6 4 35 35 H 1.07995 * 119.91768 * 0.03877 * 16 15 14 36 36 H 1.07997 * 119.90101 * 180.02562 * 17 16 15 37 37 H 1.08010 * 119.98224 * 180.28272 * 18 17 16 38 38 H 1.08005 * 120.09053 * 359.95481 * 26 15 14 39 39 H 1.08999 * 112.84826 * 352.70159 * 27 14 12 40 40 H 1.09000 * 113.61944 * 334.56980 * 28 27 14 41 41 H 1.08999 * 113.61427 * 105.47416 * 28 27 14 42 42 H 1.09004 * 113.61503 * 270.88685 * 29 28 27 43 43 H 1.08994 * 113.61360 * 139.98456 * 29 28 27 44 44 H 1.08998 * 113.61926 * 220.02384 * 30 29 28 45 45 H 1.09003 * 113.69286 * 89.12166 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.3451 -2.1619 -4.4121 10 1 2.4875 -0.1405 -5.1119 11 1 3.6311 -1.7567 -3.7116 12 6 2.0323 -0.7103 1.2306 13 8 2.3810 -1.8698 1.1615 14 7 2.0939 -0.0569 2.4078 15 6 2.6885 -0.6686 3.5172 16 6 2.6037 -0.0710 4.7689 17 6 3.1900 -0.6719 5.8663 18 6 3.8627 -1.8696 5.7254 19 6 3.9526 -2.4757 4.4742 20 6 4.6761 -3.7631 4.3212 21 7 4.8378 -4.4608 3.1881 22 7 5.5247 -5.5126 3.4808 23 7 5.7871 -5.5031 4.7410 24 1 6.2886 -6.1847 5.2149 25 7 5.2793 -4.4454 5.2742 26 6 3.3627 -1.8710 3.3678 27 6 1.5386 1.2936 2.5261 28 6 2.4164 2.2506 3.3496 29 6 1.1136 2.7968 3.9574 30 6 0.4839 1.4309 3.6368 31 1 -0.3633 -1.0208 -0.1180 32 1 -0.3633 0.4082 0.9430 33 1 -0.3633 0.6126 -0.8251 34 1 0.7091 1.1611 -3.4844 35 1 2.0781 0.8654 4.8842 36 1 3.1212 -0.2039 6.8372 37 1 4.3159 -2.3387 6.5863 38 1 3.4294 -2.3374 2.3959 39 1 1.2204 1.7057 1.5684 40 1 3.0563 1.7438 4.0719 41 1 2.9548 2.9796 2.7440 42 1 0.6797 3.6212 3.3914 43 1 1.1837 3.0055 5.0248 44 1 -0.5377 1.4980 3.2628 45 1 0.5946 0.6989 4.4368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:20 Heat of formation + Delta-G solvation = 176.319982 kcal Electronic energy + Delta-G solvation = -30023.797080 eV Core-core repulsion = 26046.823294 eV Total energy + Delta-G solvation = -3976.973785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.38132 -41.15092 -38.24927 -38.13160 -34.41155 -34.05830 -33.83984 -33.22442 -30.95440 -30.43082 -29.17648 -25.66204 -25.28469 -25.14590 -24.66987 -24.24222 -23.38029 -22.08234 -20.95563 -19.88519 -19.17046 -18.98404 -17.07467 -17.01853 -16.55940 -16.18826 -15.93216 -15.30240 -14.76745 -14.60031 -14.45896 -14.05183 -13.77536 -13.62565 -13.31971 -13.04015 -12.96766 -12.51970 -12.29566 -12.26685 -12.21222 -11.92054 -11.54677 -11.34799 -11.28360 -11.08295 -10.98750 -10.96759 -10.75063 -10.68646 -10.64922 -10.51546 -10.35458 -10.06221 -9.99534 -9.66455 -9.02381 -8.59565 -8.49813 -8.27108 -7.51594 -6.07720 -4.10546 0.79931 1.28041 1.60858 2.25096 2.45351 3.25958 3.33815 3.39725 3.42039 3.48705 3.80370 4.05444 4.30806 4.44779 4.57483 4.67649 4.86441 4.98483 5.03078 5.16342 5.26808 5.27760 5.45470 5.48566 5.60638 5.63963 5.71493 5.73007 5.77533 5.80535 5.95107 6.01602 6.04731 6.26691 6.35199 6.41704 6.48598 6.52868 6.62377 6.70391 6.74361 6.80480 6.88920 7.36600 7.45109 7.68531 7.84788 7.98882 8.22711 8.24137 8.93648 8.99362 9.54786 11.00307 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004358 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.313105 B = 6423.327643 C = 9246.582718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.035 3.965 3 H 0.051 0.949 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.507 6.507 14 N -0.553 5.553 15 C 0.172 3.828 16 C -0.174 4.174 17 C -0.104 4.104 18 C -0.120 4.120 19 C -0.003 4.003 20 C 0.228 3.772 21 N -0.253 5.253 22 N -0.054 5.054 23 N -0.235 5.235 24 H 0.472 0.528 25 N -0.301 5.301 26 C -0.125 4.125 27 C 0.113 3.887 28 C -0.174 4.174 29 C -0.137 4.137 30 C -0.168 4.168 31 H 0.038 0.962 32 H 0.014 0.986 33 H 0.092 0.908 34 H 0.262 0.738 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.192 0.808 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -0.018 19.194 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.014 3.986 3 H 0.069 0.931 4 C -0.542 4.542 5 H 0.091 0.909 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.382 6.382 14 N -0.274 5.274 15 C 0.076 3.924 16 C -0.195 4.195 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.007 4.007 20 C -0.051 4.051 21 N -0.125 5.125 22 N -0.049 5.049 23 N -0.080 5.080 24 H 0.326 0.674 25 N -0.153 5.153 26 C -0.147 4.147 27 C 0.010 3.990 28 C -0.212 4.212 29 C -0.175 4.175 30 C -0.207 4.207 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.208 0.792 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.162 -1.048 18.516 19.007 hybrid contribution 0.448 -0.471 -0.194 0.678 sum 4.610 -1.519 18.322 18.954 Atomic orbital electron populations 1.21771 0.95837 1.01481 0.99865 1.18930 0.94461 0.96610 0.88587 0.93096 1.21074 1.31504 1.12725 0.88856 0.90886 1.24907 0.94955 0.94959 0.99075 1.69870 1.36938 1.22922 1.23687 0.86443 0.79578 0.79266 0.81936 1.20559 1.21287 1.19654 1.22463 0.75465 0.86941 0.83898 1.90304 1.46265 1.17410 1.84212 1.46080 1.55776 1.16300 1.09215 1.17893 0.94170 0.92978 0.87365 1.21818 1.03912 1.02559 0.91244 1.20768 0.98128 0.95157 0.98181 1.20975 1.01061 0.96167 0.95960 1.17145 0.99477 0.89364 0.94710 1.23740 0.98819 0.97576 0.85009 1.76284 1.12450 0.99937 1.23865 1.78970 1.11797 1.16872 0.97256 1.47721 1.36822 1.17299 1.06163 0.67426 1.74873 1.15491 0.98602 1.26301 1.22655 0.95198 0.94843 1.02007 1.23048 0.94451 0.80980 1.00560 1.23863 0.97797 0.99020 1.00521 1.22682 0.96670 0.97027 1.01143 1.23749 0.99636 0.97742 0.99533 0.94324 0.96698 0.88912 0.92875 0.82871 0.85502 0.85681 0.79225 0.84629 0.87766 0.90594 0.89474 0.90941 0.90548 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.53 37.16 0.32 -2.65 16 2 C 0.04 0.84 1.77 -92.92 -0.16 0.68 16 3 H 0.05 1.23 6.78 -51.93 -0.35 0.88 16 4 C -0.50 -13.93 8.34 -34.44 -0.29 -14.22 16 5 H 0.07 2.14 6.96 -52.49 -0.37 1.78 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -24.42 11.40 55.43 0.63 -23.78 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.52 11.71 6.71 -10.98 -0.07 11.64 16 13 O -0.51 -12.81 12.26 5.55 0.07 -12.74 16 14 N -0.55 -10.05 2.93 -105.56 -0.31 -10.36 16 15 C 0.17 2.93 6.13 -83.73 -0.51 2.42 16 16 C -0.17 -2.29 6.24 -39.33 -0.25 -2.54 16 17 C -0.10 -1.20 10.03 -39.66 -0.40 -1.60 16 18 C -0.12 -1.57 9.69 -39.24 -0.38 -1.95 16 19 C 0.00 -0.05 5.87 -104.92 -0.62 -0.66 16 20 C 0.23 3.68 7.94 -156.30 -1.24 2.44 16 21 N -0.25 -4.48 12.23 32.16 0.39 -4.09 16 22 N -0.05 -0.77 13.47 60.35 0.81 0.04 16 23 N -0.24 -2.47 7.90 60.35 0.48 -2.00 16 24 H 0.47 2.35 8.96 -340.38 -3.05 -0.70 16 25 N -0.30 -3.92 12.08 32.17 0.39 -3.53 16 26 C -0.13 -2.34 8.61 -39.07 -0.34 -2.68 16 27 C 0.11 1.66 3.27 -67.12 -0.22 1.44 16 28 C -0.17 -2.05 7.14 -25.92 -0.18 -2.23 16 29 C -0.14 -1.31 7.62 -25.92 -0.20 -1.50 16 30 C -0.17 -1.98 7.22 -25.92 -0.19 -2.16 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.27 6.88 -51.93 -0.36 -0.08 16 33 H 0.09 2.25 6.28 -51.93 -0.33 1.93 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.15 1.70 2.89 -52.49 -0.15 1.55 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.39 7.88 -52.48 -0.41 0.98 16 38 H 0.19 4.21 4.59 -54.97 -0.25 3.96 16 39 H 0.14 2.16 5.26 -51.93 -0.27 1.89 16 40 H 0.10 1.22 4.69 -51.93 -0.24 0.97 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 1.13 5.34 -51.93 -0.28 0.85 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -32.54 357.12 -9.73 -42.27 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.73 Total: 4.16 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.82 Total: -11.98 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 2.39 Total: -43.71 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.54 -9.73 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.590 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds