Wall clock time and date at job start Wed Apr 1 2020 00:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46761 * 2 1 4 4 C 1.50698 * 109.47445 * 239.99494 * 2 1 3 5 5 H 1.08001 * 119.99913 * 239.99845 * 4 2 1 6 6 C 1.37876 * 120.00050 * 60.00101 * 4 2 1 7 7 N 1.31521 * 119.99853 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00304 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46934 * 89.99504 * 8 6 4 10 10 H 1.48493 * 109.47085 * 210.00039 * 8 6 4 11 11 H 1.48505 * 109.46682 * 329.99909 * 8 6 4 12 12 C 1.50701 * 109.47079 * 119.99242 * 2 1 3 13 13 O 1.21286 * 119.99747 * 98.51268 * 12 2 1 14 14 N 1.34781 * 120.00016 * 278.51940 * 12 2 1 15 15 C 1.39943 * 119.99466 * 186.65632 * 14 12 2 16 16 C 1.38966 * 120.00701 * 188.14161 * 15 14 12 17 17 C 1.38174 * 120.16366 * 180.02562 * 16 15 14 18 18 C 1.38092 * 120.18849 * 359.97438 * 17 16 15 19 19 C 1.39312 * 120.02834 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.08493 * 179.97438 * 19 18 17 21 21 N 1.34043 * 126.67555 * 179.68396 * 20 19 18 22 22 N 1.28991 * 107.27047 * 179.83545 * 21 20 19 23 23 N 1.28729 * 108.94125 * 0.43912 * 22 21 20 24 24 H 0.96995 * 125.34236 * 179.75316 * 23 22 21 25 25 N 1.28874 * 109.31700 * 359.72245 * 23 22 21 26 26 C 1.38656 * 120.01761 * 8.16200 * 15 14 12 27 27 C 1.46499 * 120.00214 * 6.65107 * 14 12 2 28 28 C 1.53774 * 113.61263 * 221.39279 * 27 14 12 29 29 C 1.53787 * 87.08032 * 220.01940 * 28 27 14 30 30 C 1.53780 * 87.08179 * 25.43305 * 29 28 27 31 31 H 1.08997 * 109.46945 * 173.40606 * 1 2 3 32 32 H 1.08992 * 109.47222 * 293.40865 * 1 2 3 33 33 H 1.08997 * 109.46760 * 53.40774 * 1 2 3 34 34 H 0.96993 * 119.99789 * 180.02562 * 7 6 4 35 35 H 1.07995 * 119.91768 * 0.03877 * 16 15 14 36 36 H 1.07997 * 119.90101 * 180.02562 * 17 16 15 37 37 H 1.08010 * 119.98224 * 180.28272 * 18 17 16 38 38 H 1.08005 * 120.09053 * 359.95481 * 26 15 14 39 39 H 1.08999 * 112.84826 * 352.70159 * 27 14 12 40 40 H 1.09000 * 113.61944 * 334.56980 * 28 27 14 41 41 H 1.08999 * 113.61427 * 105.47416 * 28 27 14 42 42 H 1.09004 * 113.61503 * 270.88685 * 29 28 27 43 43 H 1.08994 * 113.61360 * 139.98456 * 29 28 27 44 44 H 1.08998 * 113.61926 * 220.02384 * 30 29 28 45 45 H 1.09003 * 113.69286 * 89.12166 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.3451 -2.1619 -4.4121 10 1 2.4875 -0.1405 -5.1119 11 1 3.6311 -1.7567 -3.7116 12 6 2.0323 -0.7103 1.2306 13 8 2.3810 -1.8698 1.1615 14 7 2.0939 -0.0569 2.4078 15 6 2.6885 -0.6686 3.5172 16 6 2.6037 -0.0710 4.7689 17 6 3.1900 -0.6719 5.8663 18 6 3.8627 -1.8696 5.7254 19 6 3.9526 -2.4757 4.4742 20 6 4.6761 -3.7631 4.3212 21 7 4.8378 -4.4608 3.1881 22 7 5.5247 -5.5126 3.4808 23 7 5.7871 -5.5031 4.7410 24 1 6.2886 -6.1847 5.2149 25 7 5.2793 -4.4454 5.2742 26 6 3.3627 -1.8710 3.3678 27 6 1.5386 1.2936 2.5261 28 6 2.4164 2.2506 3.3496 29 6 1.1136 2.7968 3.9574 30 6 0.4839 1.4309 3.6368 31 1 -0.3633 -1.0208 -0.1180 32 1 -0.3633 0.4082 0.9430 33 1 -0.3633 0.6126 -0.8251 34 1 0.7091 1.1611 -3.4844 35 1 2.0781 0.8654 4.8842 36 1 3.1212 -0.2039 6.8372 37 1 4.3159 -2.3387 6.5863 38 1 3.4294 -2.3374 2.3959 39 1 1.2204 1.7057 1.5684 40 1 3.0563 1.7438 4.0719 41 1 2.9548 2.9796 2.7440 42 1 0.6797 3.6212 3.3914 43 1 1.1837 3.0055 5.0248 44 1 -0.5377 1.4980 3.2628 45 1 0.5946 0.6989 4.4368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:19 Heat of formation + Delta-G solvation = 155.279290 kcal Electronic energy + Delta-G solvation = -30024.709472 eV Core-core repulsion = 26046.823294 eV Total energy + Delta-G solvation = -3977.886178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.49152 -42.41877 -39.73749 -39.21880 -35.93329 -35.53433 -35.25019 -34.40562 -32.79793 -31.55732 -30.53391 -27.31787 -26.53431 -26.30562 -25.84851 -25.41178 -24.87358 -23.37988 -22.26478 -20.95408 -20.42132 -20.20863 -18.56794 -18.17516 -17.94347 -17.82864 -17.22481 -16.76990 -16.24500 -16.18126 -15.62890 -15.36637 -15.04702 -14.92586 -14.82365 -14.35876 -14.27601 -13.78469 -13.75343 -13.38744 -13.29262 -13.25397 -12.99560 -12.88085 -12.67052 -12.61220 -12.44899 -12.35681 -12.29547 -12.19530 -12.04263 -12.01350 -11.73302 -11.55087 -11.15008 -10.92340 -10.81110 -10.57485 -10.02525 -9.65786 -8.78496 -8.18862 -6.28088 -0.31185 0.14771 0.43052 1.26417 1.38324 1.39594 1.40310 1.50937 1.81906 1.93696 2.42721 2.66586 2.89797 3.11427 3.18273 3.60587 3.75382 3.78246 3.96584 4.02192 4.06267 4.18420 4.25886 4.38223 4.42586 4.53798 4.59226 4.67957 4.70724 4.81119 4.86847 4.90594 4.97174 5.03624 5.14708 5.17208 5.19633 5.27822 5.43174 5.46253 5.52324 5.55087 5.61740 5.66750 5.70653 5.88314 6.14091 6.16210 6.49286 6.76811 7.09952 7.30133 7.40761 8.87618 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004358 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.313105 B = 6423.327643 C = 9246.582718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.036 3.964 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.281 1.281 12 C 0.512 3.488 13 O -0.549 6.549 14 N -0.546 5.546 15 C 0.145 3.855 16 C -0.157 4.157 17 C -0.085 4.085 18 C -0.107 4.107 19 C -0.017 4.017 20 C 0.210 3.790 21 N -0.306 5.306 22 N -0.063 5.063 23 N -0.197 5.197 24 H 0.495 0.505 25 N -0.282 5.282 26 C -0.161 4.161 27 C 0.084 3.916 28 C -0.169 4.169 29 C -0.116 4.116 30 C -0.162 4.162 31 H 0.017 0.983 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.181 0.819 36 H 0.180 0.820 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 1.578 23.195 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.207 1.207 12 C 0.305 3.695 13 O -0.427 6.427 14 N -0.267 5.267 15 C 0.050 3.950 16 C -0.178 4.178 17 C -0.103 4.103 18 C -0.128 4.128 19 C -0.020 4.020 20 C -0.069 4.069 21 N -0.178 5.178 22 N -0.058 5.058 23 N -0.048 5.048 24 H 0.355 0.645 25 N -0.136 5.136 26 C -0.183 4.183 27 C -0.018 4.018 28 C -0.207 4.207 29 C -0.153 4.153 30 C -0.200 4.200 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.198 0.802 36 H 0.197 0.803 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.205 0.570 22.551 22.947 hybrid contribution 0.532 -1.031 -1.295 1.739 sum 4.737 -0.461 21.257 21.783 Atomic orbital electron populations 1.21551 0.94842 0.99944 1.00950 1.18786 0.95232 0.95862 0.88654 0.93662 1.21192 1.32088 1.12517 0.91144 0.93917 1.25491 0.95069 0.95638 1.01078 1.69928 1.36896 1.23207 1.24437 0.85659 0.78564 0.78654 0.79406 1.20147 1.19513 1.20659 1.22082 0.75691 0.86542 0.85179 1.90337 1.48136 1.18989 1.85286 1.45894 1.55327 1.17184 1.08276 1.18094 0.95314 0.93206 0.88338 1.22131 1.03054 1.02942 0.89663 1.21353 0.95433 0.93947 0.99604 1.21350 1.00051 0.96344 0.95071 1.17296 0.99762 0.89662 0.95328 1.23899 0.99750 0.98167 0.85110 1.76283 1.14364 1.01399 1.25711 1.78890 1.12038 1.16315 0.98533 1.47791 1.34876 1.16839 1.05334 0.64532 1.74813 1.14863 0.98643 1.25234 1.22276 0.98194 0.96555 1.01297 1.23487 0.97310 0.79795 1.01242 1.23881 0.98709 0.98047 1.00041 1.22658 0.93862 0.95679 1.03114 1.23760 0.98811 0.99397 0.98067 0.96340 0.93296 0.90541 0.92420 0.80212 0.80320 0.83006 0.83612 0.86665 0.87215 0.90742 0.88619 0.87623 0.90387 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.42 8.53 71.98 0.61 -4.81 16 2 C 0.04 1.83 1.77 -12.29 -0.02 1.81 16 3 H 0.05 2.34 6.78 -2.38 -0.02 2.32 16 4 C -0.53 -31.39 8.34 25.60 0.21 -31.18 16 5 H 0.04 2.73 6.96 -2.91 -0.02 2.71 16 6 C 0.03 1.54 5.30 84.65 0.45 1.98 16 7 N -0.91 -50.59 11.40 21.45 0.24 -50.35 16 8 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 12 C 0.51 24.89 6.71 87.66 0.59 25.48 16 13 O -0.55 -30.59 12.26 -3.05 -0.04 -30.62 16 14 N -0.55 -20.57 2.93 -606.25 -1.78 -22.35 16 15 C 0.15 4.99 6.13 38.12 0.23 5.22 16 16 C -0.16 -3.64 6.24 22.43 0.14 -3.50 16 17 C -0.09 -1.56 10.03 22.22 0.22 -1.34 16 18 C -0.11 -2.45 9.69 22.49 0.22 -2.23 16 19 C -0.02 -0.54 5.87 -20.06 -0.12 -0.66 16 20 C 0.21 6.89 7.94 137.38 1.09 7.98 16 21 N -0.31 -11.48 12.23 -52.18 -0.64 -12.12 16 22 N -0.06 -1.84 13.47 37.02 0.50 -1.34 16 23 N -0.20 -3.92 7.90 37.02 0.29 -3.63 16 24 H 0.50 3.90 8.96 -347.55 -3.12 0.79 16 25 N -0.28 -6.96 12.08 -52.13 -0.63 -7.59 16 26 C -0.16 -6.36 8.61 22.60 0.19 -6.17 16 27 C 0.08 2.42 3.27 45.52 0.15 2.57 16 28 C -0.17 -3.56 7.14 31.12 0.22 -3.34 16 29 C -0.12 -1.71 7.62 31.12 0.24 -1.47 16 30 C -0.16 -3.35 7.22 31.12 0.22 -3.13 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 1.91 6.88 -2.39 -0.02 1.89 16 33 H 0.08 3.84 6.28 -2.39 -0.01 3.83 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.18 3.14 2.89 -2.91 -0.01 3.13 16 36 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 2.67 7.88 -2.91 -0.02 2.65 16 38 H 0.15 7.21 4.59 -42.21 -0.19 7.02 16 39 H 0.12 3.76 5.26 -2.39 -0.01 3.75 16 40 H 0.11 2.19 4.69 -2.39 -0.01 2.18 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.10 2.02 5.34 -2.39 -0.01 2.01 16 Total: -1.00 -79.02 357.12 2.42 -76.60 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -2.21 Total: 16.30 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.66 Total: -12.76 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -2.01 Total: -97.38 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.04 Total: -30.62 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -79.02 2.42 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.875 kcal (2) G-P(sol) polarization free energy of solvation -79.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds