Wall clock time and date at job start Wed Apr 1 2020 00:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47563 * 2 1 4 4 C 1.50699 * 109.46950 * 120.00924 * 2 1 3 5 5 H 1.08004 * 120.00051 * 120.00000 * 4 2 1 6 6 C 1.37876 * 119.99607 * 299.99292 * 4 2 1 7 7 N 1.31509 * 120.00464 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47376 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46812 * 120.00254 * 8 6 4 11 11 H 1.48495 * 109.47409 * 240.00022 * 8 6 4 12 12 C 1.50706 * 109.46732 * 240.00644 * 2 1 3 13 13 O 1.21290 * 119.99801 * 249.11183 * 12 2 1 14 14 N 1.34775 * 120.00105 * 69.11488 * 12 2 1 15 15 C 1.39943 * 119.99806 * 185.80042 * 14 12 2 16 16 C 1.38956 * 120.01348 * 188.40393 * 15 14 12 17 17 C 1.38168 * 120.17102 * 180.27988 * 16 15 14 18 18 C 1.38096 * 120.18696 * 359.76671 * 17 16 15 19 19 C 1.39312 * 120.02342 * 359.97438 * 18 17 16 20 20 C 1.48476 * 120.08213 * 180.02562 * 19 18 17 21 21 N 1.34049 * 126.66931 * 179.66295 * 20 19 18 22 22 N 1.28993 * 107.26437 * 179.87072 * 21 20 19 23 23 N 1.28728 * 108.94087 * 0.39942 * 22 21 20 24 24 H 0.97005 * 125.33833 * 179.74597 * 23 22 21 25 25 N 1.28873 * 109.31746 * 359.74438 * 23 22 21 26 26 C 1.38654 * 120.01317 * 8.17390 * 15 14 12 27 27 C 1.46494 * 119.99997 * 5.80096 * 14 12 2 28 28 C 1.53789 * 113.61439 * 221.19712 * 27 14 12 29 29 C 1.53782 * 87.07817 * 220.01773 * 28 27 14 30 30 C 1.53780 * 113.61536 * 123.69805 * 27 14 12 31 31 H 1.08992 * 109.47587 * 186.21574 * 1 2 3 32 32 H 1.09001 * 109.47196 * 306.21987 * 1 2 3 33 33 H 1.09004 * 109.47260 * 66.21787 * 1 2 3 34 34 H 0.97000 * 120.00602 * 180.02562 * 7 6 4 35 35 H 1.08004 * 119.91986 * 0.02562 * 16 15 14 36 36 H 1.07993 * 119.91042 * 179.74515 * 17 16 15 37 37 H 1.08002 * 119.98906 * 180.02562 * 18 17 16 38 38 H 1.08007 * 120.09627 * 359.97438 * 26 15 14 39 39 H 1.09004 * 112.85408 * 352.49851 * 27 14 12 40 40 H 1.08997 * 113.60784 * 334.56403 * 28 27 14 41 41 H 1.08996 * 113.61367 * 105.46943 * 28 27 14 42 42 H 1.08997 * 113.61425 * 270.87805 * 29 28 27 43 43 H 1.09004 * 113.61313 * 139.98088 * 29 28 27 44 44 H 1.08997 * 113.61473 * 254.52798 * 30 27 14 45 45 H 1.08995 * 113.61463 * 25.35052 * 30 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6992 -0.2396 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3224 -1.1200 4.0077 9 1 3.1482 -2.2861 3.6035 10 1 3.1473 -0.1863 4.8159 11 1 1.1678 -1.5871 4.8163 12 6 2.0322 -0.7103 -1.2306 13 8 2.5874 -1.7837 -1.1271 14 7 1.8645 -0.1528 -2.4461 15 6 2.2202 -0.8645 -3.5974 16 6 2.2134 -0.2326 -4.8350 17 6 2.5584 -0.9337 -5.9745 18 6 2.9165 -2.2647 -5.8892 19 6 2.9312 -2.9046 -4.6518 20 6 3.3166 -4.3354 -4.5585 21 7 3.3819 -5.0758 -3.4429 22 7 3.7517 -6.2614 -3.7914 23 7 3.9260 -6.2868 -5.0665 24 1 4.2085 -7.0606 -5.5789 25 7 3.6664 -5.1231 -5.5556 26 6 2.5841 -2.1991 -3.5030 27 6 1.3099 1.1981 -2.5622 28 6 0.2999 1.3528 -3.7115 29 6 0.9373 2.7259 -3.9820 30 6 2.2167 2.1722 -3.3327 31 1 -0.3634 -1.0215 0.1113 32 1 -0.3633 0.6072 0.8291 33 1 -0.3634 0.4144 -0.9404 34 1 0.7089 1.1610 3.4845 35 1 1.9338 0.8081 -4.9070 36 1 2.5477 -0.4395 -6.9347 37 1 3.1860 -2.8095 -6.7819 38 1 2.5941 -2.6910 -2.5416 39 1 0.9541 1.5929 -1.6104 40 1 0.4458 0.6367 -4.5202 41 1 -0.7361 1.4105 -3.3776 42 1 0.4785 3.5388 -3.4192 43 1 1.0492 2.9541 -5.0420 44 1 2.7281 2.8915 -2.6930 45 1 2.8875 1.6801 -4.0368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589786917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:22 Heat of formation + Delta-G solvation = 177.576890 kcal Electronic energy + Delta-G solvation = -30040.424013 eV Core-core repulsion = 26063.504732 eV Total energy + Delta-G solvation = -3976.919282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.38515 -41.16346 -38.24599 -38.13842 -34.41112 -34.04956 -33.87146 -33.22767 -30.97528 -30.43660 -29.14979 -25.66952 -25.26324 -25.18131 -24.66484 -24.24367 -23.32757 -22.12311 -20.95507 -19.87473 -19.16646 -19.00564 -17.07837 -17.01379 -16.49855 -16.19970 -15.88591 -15.33829 -14.91233 -14.56150 -14.47541 -14.05288 -13.78879 -13.58890 -13.33957 -13.11449 -12.87651 -12.53718 -12.29488 -12.27426 -12.15055 -11.89796 -11.57750 -11.37427 -11.29642 -11.07603 -10.98109 -10.94170 -10.77772 -10.71218 -10.63962 -10.56478 -10.29474 -10.03574 -9.95359 -9.67236 -9.00621 -8.57909 -8.49700 -8.27710 -7.52078 -6.07087 -4.09594 0.79724 1.27721 1.60721 2.24757 2.45085 3.25902 3.32424 3.40585 3.42093 3.50759 3.80106 4.05149 4.30536 4.45460 4.57338 4.67434 4.86672 4.98224 5.03083 5.16200 5.27459 5.27725 5.45356 5.48282 5.60422 5.63801 5.71351 5.72924 5.77423 5.80775 5.94769 6.02199 6.04076 6.26466 6.34880 6.41766 6.48241 6.52602 6.61538 6.70149 6.73283 6.79864 6.87454 7.37944 7.44689 7.66807 7.86157 8.00013 8.22369 8.24991 8.95460 9.01215 9.56148 11.01110 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.004298 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.999135 B = 6513.535097 C = 9288.897600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.034 3.966 3 H 0.053 0.947 4 C -0.503 4.503 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.518 3.482 13 O -0.506 6.506 14 N -0.552 5.552 15 C 0.172 3.828 16 C -0.174 4.174 17 C -0.104 4.104 18 C -0.120 4.120 19 C -0.003 4.003 20 C 0.228 3.772 21 N -0.253 5.253 22 N -0.054 5.054 23 N -0.235 5.235 24 H 0.472 0.528 25 N -0.301 5.301 26 C -0.126 4.126 27 C 0.112 3.888 28 C -0.173 4.173 29 C -0.137 4.137 30 C -0.170 4.170 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.192 0.808 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -1.244 -19.717 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.311 3.689 13 O -0.380 6.380 14 N -0.273 5.273 15 C 0.076 3.924 16 C -0.195 4.195 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.007 4.007 20 C -0.051 4.051 21 N -0.125 5.125 22 N -0.049 5.049 23 N -0.080 5.080 24 H 0.326 0.674 25 N -0.153 5.153 26 C -0.148 4.148 27 C 0.009 3.991 28 C -0.211 4.211 29 C -0.175 4.175 30 C -0.208 4.208 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.208 0.792 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.326 -2.272 -19.036 19.217 hybrid contribution 0.380 -0.470 0.184 0.632 sum 1.707 -2.741 -18.852 19.127 Atomic orbital electron populations 1.21839 0.95949 1.01419 1.00063 1.18914 0.94330 0.96770 0.88677 0.92896 1.21160 1.31298 1.12874 0.88803 0.90564 1.24912 0.94963 0.94991 0.99099 1.69873 1.37019 1.23053 1.23560 0.86402 0.78684 0.79857 0.82399 1.19425 1.21061 1.21003 1.22464 0.76515 0.85831 0.84074 1.90295 1.40588 1.22154 1.84998 1.46060 1.60492 1.15939 1.04818 1.17893 0.96617 0.91005 0.86903 1.21813 1.04416 1.01858 0.91427 1.20766 0.99717 0.93795 0.97962 1.20977 1.01904 0.95122 0.96164 1.17153 1.03487 0.85598 0.94477 1.23741 1.00126 0.96795 0.84479 1.76287 1.15706 0.96128 1.24428 1.78969 1.13764 1.16443 0.95722 1.47723 1.43700 1.10634 1.05951 0.67421 1.74867 1.20687 0.93035 1.26675 1.22693 0.97686 0.92931 1.01478 1.23094 0.94536 0.80869 1.00650 1.23858 0.99654 0.97916 0.99658 1.22682 0.96839 0.96931 1.01074 1.23753 0.97664 0.99011 1.00383 0.94417 0.88869 0.96442 0.92958 0.82882 0.85508 0.85688 0.79156 0.84476 0.87769 0.90640 0.89479 0.90942 0.90514 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.44 37.16 0.31 -2.70 16 2 C 0.03 0.82 1.78 -92.92 -0.17 0.65 16 3 H 0.05 1.29 7.20 -51.93 -0.37 0.92 16 4 C -0.50 -13.94 8.37 -34.44 -0.29 -14.22 16 5 H 0.08 2.25 6.79 -52.48 -0.36 1.89 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -24.45 11.39 55.43 0.63 -23.82 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 11.66 6.84 -10.98 -0.08 11.59 16 13 O -0.51 -12.77 12.02 5.55 0.07 -12.70 16 14 N -0.55 -9.98 2.93 -105.55 -0.31 -10.29 16 15 C 0.17 2.92 6.13 -83.73 -0.51 2.40 16 16 C -0.17 -2.28 6.25 -39.34 -0.25 -2.53 16 17 C -0.10 -1.20 10.03 -39.66 -0.40 -1.60 16 18 C -0.12 -1.56 9.69 -39.23 -0.38 -1.94 16 19 C 0.00 -0.05 5.87 -104.92 -0.62 -0.67 16 20 C 0.23 3.66 7.94 -156.31 -1.24 2.42 16 21 N -0.25 -4.46 12.23 32.16 0.39 -4.07 16 22 N -0.05 -0.77 13.47 60.35 0.81 0.05 16 23 N -0.24 -2.46 7.90 60.35 0.48 -1.99 16 24 H 0.47 2.33 8.96 -340.36 -3.05 -0.72 16 25 N -0.30 -3.90 12.08 32.17 0.39 -3.51 16 26 C -0.13 -2.34 8.62 -39.07 -0.34 -2.68 16 27 C 0.11 1.64 3.08 -67.12 -0.21 1.43 16 28 C -0.17 -2.00 7.14 -25.91 -0.18 -2.19 16 29 C -0.14 -1.31 7.62 -25.92 -0.20 -1.50 16 30 C -0.17 -2.01 7.22 -25.92 -0.19 -2.20 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 2.25 6.26 -51.93 -0.33 1.93 16 33 H 0.02 0.32 6.13 -51.93 -0.32 0.00 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.15 1.70 2.90 -52.48 -0.15 1.54 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.39 7.88 -52.49 -0.41 0.97 16 38 H 0.19 4.21 4.56 -55.10 -0.25 3.95 16 39 H 0.14 2.18 4.94 -51.93 -0.26 1.92 16 40 H 0.10 1.20 4.69 -51.93 -0.24 0.96 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.14 5.35 -51.93 -0.28 0.87 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -32.55 355.91 -9.70 -42.25 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.69 Total: 4.25 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -4.82 Total: -12.16 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 2.39 Total: -43.63 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.07 Total: -12.70 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.55 -9.70 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.828 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds