Wall clock time and date at job start Wed Apr 1 2020 00:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47563 * 2 1 4 4 C 1.50699 * 109.46950 * 120.00924 * 2 1 3 5 5 H 1.08004 * 120.00051 * 120.00000 * 4 2 1 6 6 C 1.37876 * 119.99607 * 299.99292 * 4 2 1 7 7 N 1.31509 * 120.00464 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99612 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47376 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46812 * 120.00254 * 8 6 4 11 11 H 1.48495 * 109.47409 * 240.00022 * 8 6 4 12 12 C 1.50706 * 109.46732 * 240.00644 * 2 1 3 13 13 O 1.21290 * 119.99801 * 249.11183 * 12 2 1 14 14 N 1.34775 * 120.00105 * 69.11488 * 12 2 1 15 15 C 1.39943 * 119.99806 * 185.80042 * 14 12 2 16 16 C 1.38956 * 120.01348 * 188.40393 * 15 14 12 17 17 C 1.38168 * 120.17102 * 180.27988 * 16 15 14 18 18 C 1.38096 * 120.18696 * 359.76671 * 17 16 15 19 19 C 1.39312 * 120.02342 * 359.97438 * 18 17 16 20 20 C 1.48476 * 120.08213 * 180.02562 * 19 18 17 21 21 N 1.34049 * 126.66931 * 179.66295 * 20 19 18 22 22 N 1.28993 * 107.26437 * 179.87072 * 21 20 19 23 23 N 1.28728 * 108.94087 * 0.39942 * 22 21 20 24 24 H 0.97005 * 125.33833 * 179.74597 * 23 22 21 25 25 N 1.28873 * 109.31746 * 359.74438 * 23 22 21 26 26 C 1.38654 * 120.01317 * 8.17390 * 15 14 12 27 27 C 1.46494 * 119.99997 * 5.80096 * 14 12 2 28 28 C 1.53789 * 113.61439 * 221.19712 * 27 14 12 29 29 C 1.53782 * 87.07817 * 220.01773 * 28 27 14 30 30 C 1.53780 * 113.61536 * 123.69805 * 27 14 12 31 31 H 1.08992 * 109.47587 * 186.21574 * 1 2 3 32 32 H 1.09001 * 109.47196 * 306.21987 * 1 2 3 33 33 H 1.09004 * 109.47260 * 66.21787 * 1 2 3 34 34 H 0.97000 * 120.00602 * 180.02562 * 7 6 4 35 35 H 1.08004 * 119.91986 * 0.02562 * 16 15 14 36 36 H 1.07993 * 119.91042 * 179.74515 * 17 16 15 37 37 H 1.08002 * 119.98906 * 180.02562 * 18 17 16 38 38 H 1.08007 * 120.09627 * 359.97438 * 26 15 14 39 39 H 1.09004 * 112.85408 * 352.49851 * 27 14 12 40 40 H 1.08997 * 113.60784 * 334.56403 * 28 27 14 41 41 H 1.08996 * 113.61367 * 105.46943 * 28 27 14 42 42 H 1.08997 * 113.61425 * 270.87805 * 29 28 27 43 43 H 1.09004 * 113.61313 * 139.98088 * 29 28 27 44 44 H 1.08997 * 113.61473 * 254.52798 * 30 27 14 45 45 H 1.08995 * 113.61463 * 25.35052 * 30 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1311 6 6 1.6992 -0.2396 2.4826 7 7 0.9429 0.8294 2.6035 8 14 2.3224 -1.1200 4.0077 9 1 3.1482 -2.2861 3.6035 10 1 3.1473 -0.1863 4.8159 11 1 1.1678 -1.5871 4.8163 12 6 2.0322 -0.7103 -1.2306 13 8 2.5874 -1.7837 -1.1271 14 7 1.8645 -0.1528 -2.4461 15 6 2.2202 -0.8645 -3.5974 16 6 2.2134 -0.2326 -4.8350 17 6 2.5584 -0.9337 -5.9745 18 6 2.9165 -2.2647 -5.8892 19 6 2.9312 -2.9046 -4.6518 20 6 3.3166 -4.3354 -4.5585 21 7 3.3819 -5.0758 -3.4429 22 7 3.7517 -6.2614 -3.7914 23 7 3.9260 -6.2868 -5.0665 24 1 4.2085 -7.0606 -5.5789 25 7 3.6664 -5.1231 -5.5556 26 6 2.5841 -2.1991 -3.5030 27 6 1.3099 1.1981 -2.5622 28 6 0.2999 1.3528 -3.7115 29 6 0.9373 2.7259 -3.9820 30 6 2.2167 2.1722 -3.3327 31 1 -0.3634 -1.0215 0.1113 32 1 -0.3633 0.6072 0.8291 33 1 -0.3634 0.4144 -0.9404 34 1 0.7089 1.1610 3.4845 35 1 1.9338 0.8081 -4.9070 36 1 2.5477 -0.4395 -6.9347 37 1 3.1860 -2.8095 -6.7819 38 1 2.5941 -2.6910 -2.5416 39 1 0.9541 1.5929 -1.6104 40 1 0.4458 0.6367 -4.5202 41 1 -0.7361 1.4105 -3.3776 42 1 0.4785 3.5388 -3.4192 43 1 1.0492 2.9541 -5.0420 44 1 2.7281 2.8915 -2.6930 45 1 2.8875 1.6801 -4.0368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:22 Heat of formation + Delta-G solvation = 156.488597 kcal Electronic energy + Delta-G solvation = -30041.338470 eV Core-core repulsion = 26063.504732 eV Total energy + Delta-G solvation = -3977.833739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.48966 -42.42986 -39.73087 -39.22290 -35.93538 -35.53690 -35.25418 -34.40906 -32.81196 -31.55662 -30.50693 -27.31263 -26.55218 -26.29827 -25.83232 -25.42634 -24.81661 -23.42210 -22.25198 -20.93677 -20.43246 -20.20637 -18.55099 -18.17335 -17.93010 -17.77342 -17.22865 -16.78904 -16.36514 -16.19546 -15.63662 -15.34075 -14.99653 -14.93224 -14.85683 -14.36000 -14.18645 -13.84918 -13.69913 -13.36675 -13.32424 -13.26499 -12.98572 -12.84563 -12.71678 -12.58308 -12.43851 -12.41073 -12.25008 -12.18510 -12.05146 -11.98343 -11.72644 -11.55043 -11.09512 -10.94880 -10.80928 -10.55794 -10.01674 -9.65593 -8.78563 -8.18303 -6.27237 -0.30902 0.14995 0.43403 1.26671 1.37171 1.39575 1.40473 1.53120 1.81832 1.93827 2.43239 2.66863 2.89962 3.12102 3.18536 3.60643 3.75350 3.78549 3.96961 4.02108 4.06545 4.18624 4.26157 4.38495 4.42770 4.53648 4.59338 4.69222 4.71295 4.81335 4.86081 4.90380 4.95641 5.03629 5.15044 5.17516 5.19781 5.28440 5.43692 5.46799 5.52458 5.55254 5.61842 5.66852 5.71475 5.88959 6.15189 6.16685 6.49867 6.79403 7.10177 7.31098 7.41837 8.88424 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.004298 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.999135 B = 6513.535097 C = 9288.897600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.035 3.965 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.273 1.273 12 C 0.511 3.489 13 O -0.548 6.548 14 N -0.545 5.545 15 C 0.146 3.854 16 C -0.157 4.157 17 C -0.086 4.086 18 C -0.107 4.107 19 C -0.017 4.017 20 C 0.210 3.790 21 N -0.306 5.306 22 N -0.063 5.063 23 N -0.197 5.197 24 H 0.495 0.505 25 N -0.283 5.283 26 C -0.161 4.161 27 C 0.083 3.917 28 C -0.166 4.166 29 C -0.116 4.116 30 C -0.166 4.166 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.266 0.734 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 0.259 -23.735 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.014 3.986 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.199 1.199 12 C 0.304 3.696 13 O -0.426 6.426 14 N -0.265 5.265 15 C 0.051 3.949 16 C -0.178 4.178 17 C -0.104 4.104 18 C -0.128 4.128 19 C -0.021 4.021 20 C -0.069 4.069 21 N -0.177 5.177 22 N -0.058 5.058 23 N -0.049 5.049 24 H 0.355 0.645 25 N -0.136 5.136 26 C -0.183 4.183 27 C -0.019 4.019 28 C -0.203 4.203 29 C -0.153 4.153 30 C -0.204 4.204 31 H 0.036 0.964 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.197 0.803 36 H 0.196 0.804 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.083 -0.751 -23.091 23.128 hybrid contribution 0.502 -1.022 1.282 1.715 sum 1.585 -1.773 -21.809 21.938 Atomic orbital electron populations 1.21618 0.94843 0.99924 1.01153 1.18762 0.95161 0.95930 0.88746 0.93619 1.21267 1.31894 1.12660 0.91104 0.93640 1.25496 0.95081 0.95668 1.01107 1.69931 1.36974 1.23339 1.24336 0.85607 0.78411 0.78618 0.79644 1.20883 1.19649 1.19877 1.22085 0.76725 0.85343 0.85467 1.90331 1.42523 1.23712 1.86075 1.45865 1.59926 1.16926 1.03832 1.18090 0.98441 0.90701 0.87713 1.22124 1.02755 1.02936 0.89973 1.21347 0.96739 0.92945 0.99328 1.21349 1.00139 0.95904 0.95431 1.17303 1.03990 0.85777 0.94997 1.23898 1.01051 0.97350 0.84615 1.76286 1.17758 0.97432 1.26262 1.78890 1.14306 1.15581 0.96999 1.47793 1.40980 1.10846 1.05234 0.64533 1.74808 1.20044 0.93192 1.25532 1.22312 1.00852 0.94312 1.00870 1.23529 0.97324 0.79667 1.01427 1.23869 0.99026 0.99439 0.97992 1.22659 0.94069 0.95657 1.02946 1.23771 0.98534 0.98034 1.00097 0.96380 0.90567 0.92967 0.92472 0.80252 0.80359 0.83033 0.83479 0.86457 0.87174 0.90326 0.88615 0.87647 0.90809 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.44 71.98 0.61 -4.90 16 2 C 0.04 1.80 1.78 -12.29 -0.02 1.77 16 3 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 4 C -0.53 -31.41 8.37 25.60 0.21 -31.19 16 5 H 0.05 2.92 6.79 -2.91 -0.02 2.90 16 6 C 0.03 1.48 5.30 84.66 0.45 1.93 16 7 N -0.91 -50.67 11.39 21.45 0.24 -50.43 16 8 Si 0.95 45.90 29.54 68.60 2.03 47.92 16 9 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.51 24.80 6.84 87.66 0.60 25.40 16 13 O -0.55 -30.55 12.02 -3.06 -0.04 -30.59 16 14 N -0.54 -20.39 2.93 -606.25 -1.78 -22.17 16 15 C 0.15 4.96 6.13 38.12 0.23 5.20 16 16 C -0.16 -3.62 6.25 22.43 0.14 -3.48 16 17 C -0.09 -1.56 10.03 22.22 0.22 -1.34 16 18 C -0.11 -2.44 9.69 22.49 0.22 -2.22 16 19 C -0.02 -0.54 5.87 -20.06 -0.12 -0.66 16 20 C 0.21 6.85 7.94 137.39 1.09 7.94 16 21 N -0.31 -11.41 12.23 -52.18 -0.64 -12.05 16 22 N -0.06 -1.83 13.47 37.02 0.50 -1.33 16 23 N -0.20 -3.90 7.90 37.02 0.29 -3.61 16 24 H 0.50 3.85 8.96 -347.53 -3.12 0.74 16 25 N -0.28 -6.94 12.08 -52.12 -0.63 -7.57 16 26 C -0.16 -6.33 8.62 22.60 0.19 -6.14 16 27 C 0.08 2.37 3.08 45.52 0.14 2.51 16 28 C -0.17 -3.36 7.14 31.12 0.22 -3.13 16 29 C -0.12 -1.70 7.62 31.12 0.24 -1.47 16 30 C -0.17 -3.55 7.22 31.12 0.22 -3.32 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 3.82 6.26 -2.39 -0.01 3.80 16 33 H 0.05 2.02 6.13 -2.39 -0.01 2.00 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.24 16 35 H 0.18 3.13 2.90 -2.91 -0.01 3.12 16 36 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 2.66 7.88 -2.91 -0.02 2.63 16 38 H 0.15 7.23 4.56 -44.43 -0.20 7.02 16 39 H 0.12 3.80 4.94 -2.38 -0.01 3.79 16 40 H 0.11 2.11 4.69 -2.39 -0.01 2.10 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 2.08 5.35 -2.39 -0.01 2.07 16 Total: -1.00 -79.02 355.91 2.41 -76.60 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -2.22 Total: 16.31 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 4.65 Total: -13.09 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.01 Total: -97.15 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.04 Total: -30.59 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.02 2.41 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.093 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds