Wall clock time and date at job start Wed Apr 1 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50696 * 109.47076 * 240.00179 * 2 1 3 5 5 H 1.08009 * 119.99484 * 275.03852 * 4 2 1 6 6 C 1.37872 * 120.00511 * 95.31172 * 4 2 1 7 7 N 1.31511 * 120.00162 * 184.64951 * 6 4 2 8 8 Si 1.86802 * 119.99642 * 4.65579 * 6 4 2 9 9 H 1.48500 * 109.47076 * 85.01462 * 8 6 4 10 10 H 1.48498 * 109.47332 * 205.01462 * 8 6 4 11 11 H 1.48499 * 109.47111 * 325.01831 * 8 6 4 12 12 N 1.46499 * 109.46799 * 119.99708 * 2 1 3 13 13 C 1.46501 * 120.00078 * 60.00521 * 12 2 1 14 14 C 1.34777 * 120.00106 * 239.99781 * 12 2 1 15 15 O 1.21280 * 119.99542 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 12 2 17 17 H 1.09001 * 115.54618 * 34.42249 * 16 14 12 18 18 C 1.52996 * 117.49923 * 248.74961 * 16 14 12 19 19 C 1.53005 * 117.49797 * 180.08800 * 16 14 12 20 20 H 1.09002 * 117.49757 * 0.02562 * 19 16 14 21 21 C 1.50700 * 117.49555 * 214.98375 * 19 16 14 22 22 C 1.38339 * 119.93643 * 299.72185 * 21 19 16 23 23 C 1.38303 * 120.23224 * 179.72806 * 22 21 19 24 24 C 1.38053 * 120.11413 * 0.55479 * 23 22 21 25 25 C 1.39284 * 119.88083 * 359.72061 * 24 23 22 26 26 C 1.48469 * 120.11444 * 180.02562 * 25 24 23 27 27 N 1.34043 * 126.67376 * 180.02562 * 26 25 24 28 28 N 1.28980 * 107.26874 * 180.02562 * 27 26 25 29 29 N 1.28733 * 108.94472 * 359.97438 * 28 27 26 30 30 H 0.97006 * 125.34105 * 180.02562 * 29 28 27 31 31 N 1.28867 * 109.31520 * 359.73127 * 29 28 27 32 32 C 1.38003 * 119.94202 * 120.00407 * 21 19 16 33 33 H 1.08993 * 109.47514 * 293.98371 * 1 2 3 34 34 H 1.09002 * 109.47072 * 53.98796 * 1 2 3 35 35 H 1.09000 * 109.46938 * 173.98619 * 1 2 3 36 36 H 0.97004 * 119.99831 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47484 * 89.99461 * 13 12 2 38 38 H 1.09003 * 109.47200 * 209.99592 * 13 12 2 39 39 H 1.08999 * 109.46975 * 329.99655 * 13 12 2 40 40 H 1.08997 * 117.50067 * 0.02562 * 18 16 14 41 41 H 1.09005 * 117.49826 * 145.02274 * 18 16 14 42 42 H 1.07998 * 119.88639 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.93963 * 180.29846 * 23 22 21 44 44 H 1.07997 * 120.05548 * 179.74785 * 24 23 22 45 45 H 1.07997 * 120.05757 * 359.97248 * 32 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1349 -1.7856 -1.2292 6 6 2.3664 0.0126 -2.3559 7 7 2.7171 -0.6121 -3.4587 8 14 2.3208 1.8796 -2.3141 9 1 3.6058 2.3942 -1.7763 10 1 2.1158 2.4007 -3.6895 11 1 1.2047 2.3282 -1.4433 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7461 3.3136 17 1 3.5243 -1.8041 3.1850 18 6 2.7307 -0.3045 4.6650 19 6 4.1695 0.0525 4.2832 20 1 4.3801 1.0919 4.0315 21 6 5.2794 -0.6841 4.9878 22 6 4.9832 -1.7570 5.8093 23 6 5.9976 -2.4409 6.4544 24 6 7.3109 -2.0485 6.2904 25 6 7.6140 -0.9653 5.4689 26 6 9.0248 -0.5392 5.2884 27 7 9.4634 0.4785 4.5342 28 7 10.7477 0.5133 4.6477 29 7 11.1235 -0.4329 5.4356 30 1 12.0410 -0.6229 5.6866 31 7 10.0890 -1.0842 5.8433 32 6 6.5889 -0.2835 4.8169 33 1 -0.3634 0.4177 0.9388 34 1 -0.3633 0.6042 -0.8313 35 1 -0.3633 -1.0220 -0.1077 36 1 2.9525 -0.1034 -4.2504 37 1 2.4157 -2.7377 0.9718 38 1 1.6238 -2.2852 2.5003 39 1 0.6905 -2.3002 0.9847 40 1 1.9949 0.4997 4.6643 41 1 2.5876 -1.0719 5.4258 42 1 3.9568 -2.0647 5.9436 43 1 5.7614 -3.2809 7.0909 44 1 8.1019 -2.5807 6.7979 45 1 6.8186 0.5568 4.1786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:15 Heat of formation + Delta-G solvation = 144.023140 kcal Electronic energy + Delta-G solvation = -28413.021996 eV Core-core repulsion = 24434.647715 eV Total energy + Delta-G solvation = -3978.374281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.69288 -40.17053 -39.06082 -36.62738 -35.22837 -34.60238 -33.69660 -32.62973 -31.21403 -30.65575 -30.13610 -26.21365 -25.30016 -25.20688 -24.77943 -24.25787 -23.26540 -22.24936 -20.71830 -20.06791 -19.31602 -18.20517 -17.53966 -17.37931 -17.06280 -16.23726 -15.73097 -15.69931 -15.13125 -14.74239 -14.38149 -14.27509 -14.00474 -13.71022 -13.39562 -13.25923 -12.65584 -12.61209 -12.42485 -12.35295 -12.19413 -11.99726 -11.78904 -11.71566 -11.63105 -11.43529 -11.38419 -11.30279 -11.06295 -11.02001 -10.66165 -10.59540 -10.46492 -10.32848 -9.77835 -9.29406 -9.03956 -8.96547 -8.67699 -8.57760 -7.64559 -6.14638 -4.16683 0.47460 0.95836 1.13970 1.97380 2.12232 3.05118 3.33971 3.41247 3.41929 3.48603 3.53227 3.80097 3.95210 4.13770 4.41238 4.52773 4.68601 4.83203 4.86410 4.93313 4.96379 5.09919 5.18854 5.22755 5.25290 5.38968 5.39872 5.61202 5.71300 5.73268 5.80382 6.00277 6.02961 6.07096 6.09129 6.20415 6.23874 6.26797 6.36815 6.40956 6.47097 6.59844 6.67803 6.94822 7.09117 7.49393 7.66402 7.90377 8.17417 8.52254 8.87151 8.96918 9.48242 10.97401 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002666 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.055726 B =10498.867876 C =11921.094816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.222 3.778 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.585 5.585 13 C 0.087 3.913 14 C 0.532 3.468 15 O -0.556 6.556 16 C -0.167 4.167 17 H 0.123 0.877 18 C -0.146 4.146 19 C -0.092 4.092 20 H 0.129 0.871 21 C -0.046 4.046 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.086 4.086 25 C -0.019 4.019 26 C 0.223 3.777 27 N -0.263 5.263 28 N -0.048 5.048 29 N -0.230 5.230 30 H 0.475 0.525 31 N -0.297 5.297 32 C -0.064 4.064 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 -5.090 23.794 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.701 3.299 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.315 5.315 13 C -0.057 4.057 14 C 0.319 3.681 15 O -0.435 6.435 16 C -0.188 4.188 17 H 0.141 0.859 18 C -0.183 4.183 19 C -0.110 4.110 20 H 0.147 0.853 21 C -0.046 4.046 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.106 4.106 25 C -0.023 4.023 26 C -0.056 4.056 27 N -0.136 5.136 28 N -0.044 5.044 29 N -0.076 5.076 30 H 0.329 0.671 31 N -0.149 5.149 32 C -0.084 4.084 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.950 -4.078 23.195 25.567 hybrid contribution 0.444 0.289 0.039 0.531 sum 10.394 -3.789 23.235 25.734 Atomic orbital electron populations 1.22216 0.98344 1.00893 0.99087 1.19332 0.90771 0.94947 0.82796 0.91788 1.21121 1.44564 0.95687 0.94879 0.90444 1.24962 0.93738 0.98519 0.95231 1.69889 1.45073 1.36075 1.01867 0.86897 0.79971 0.86100 0.76920 1.19538 1.21403 1.18835 1.48232 1.48789 1.11743 1.22718 1.21579 1.01463 0.83055 0.99609 1.19465 0.78812 0.86449 0.83355 1.90635 1.58662 1.17297 1.76929 1.22458 1.05013 1.00551 0.90772 0.85897 1.23099 0.96011 1.03559 0.95673 1.21069 0.89367 1.00216 1.00385 0.85285 1.19065 0.92981 0.95701 0.96844 1.21281 0.99924 0.94727 0.95792 1.21026 0.92038 1.00247 1.00447 1.21116 0.97241 0.95195 0.97077 1.17171 0.85259 0.98263 1.01571 1.23723 0.94778 0.92292 0.94840 1.76162 1.00127 1.18001 1.19348 1.78955 1.07563 1.08985 1.08852 1.47733 1.11158 1.19077 1.29584 0.67117 1.74890 0.94212 1.22278 1.23504 1.21046 0.90864 0.99241 0.97241 0.95458 0.92616 0.93093 0.92398 0.92929 0.92552 0.91088 0.87783 0.87718 0.85179 0.85173 0.85129 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.03 37.16 0.34 -2.74 16 2 C 0.22 5.38 2.30 -69.08 -0.16 5.22 16 3 H 0.06 1.71 4.04 -51.93 -0.21 1.50 16 4 C -0.52 -14.54 8.82 -34.44 -0.30 -14.85 16 5 H 0.08 2.27 7.67 -52.48 -0.40 1.87 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 8 Si 0.87 22.52 26.99 -169.99 -4.59 17.93 16 9 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.26 -6.53 6.82 56.52 0.39 -6.15 16 12 N -0.58 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.09 1.41 9.11 59.85 0.54 1.95 16 14 C 0.53 10.75 7.46 -10.99 -0.08 10.67 16 15 O -0.56 -13.38 15.59 5.56 0.09 -13.29 16 16 C -0.17 -2.42 4.43 -91.77 -0.41 -2.82 16 17 H 0.12 1.59 7.27 -51.93 -0.38 1.21 16 18 C -0.15 -1.63 9.56 -26.69 -0.26 -1.89 16 19 C -0.09 -1.20 5.55 -91.73 -0.51 -1.71 16 20 H 0.13 1.92 7.67 -51.93 -0.40 1.52 16 21 C -0.05 -0.53 5.61 -104.67 -0.59 -1.12 16 22 C -0.10 -0.91 9.30 -39.52 -0.37 -1.27 16 23 C -0.12 -0.98 10.04 -39.63 -0.40 -1.38 16 24 C -0.09 -0.80 9.70 -39.26 -0.38 -1.18 16 25 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 26 C 0.22 2.69 7.94 -156.30 -1.24 1.45 16 27 N -0.26 -3.52 12.23 32.16 0.39 -3.12 16 28 N -0.05 -0.53 13.47 60.35 0.81 0.28 16 29 N -0.23 -1.76 7.90 60.35 0.48 -1.29 16 30 H 0.47 1.20 8.96 -340.36 -3.05 -1.86 16 31 N -0.30 -2.95 12.08 32.17 0.39 -2.56 16 32 C -0.06 -0.79 9.39 -39.27 -0.37 -1.16 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 36 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.70 6.64 -51.93 -0.35 0.35 16 39 H 0.07 1.12 6.55 -51.93 -0.34 0.78 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.10 0.84 6.16 -51.93 -0.32 0.52 16 42 H 0.13 0.93 6.00 -52.49 -0.31 0.62 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 1.02 7.88 -52.49 -0.41 0.61 16 45 H 0.14 1.82 7.89 -52.49 -0.41 1.41 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -36.10 378.16 -9.54 -45.64 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.21 Total: -0.88 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.89 Total: -9.47 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 2.36 Total: -45.63 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.59 Total: 17.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.10 -9.54 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.662 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds