Wall clock time and date at job start Wed Apr 1 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47006 * 2 1 4 4 C 1.50696 * 109.47076 * 240.00179 * 2 1 3 5 5 H 1.08009 * 119.99484 * 275.03852 * 4 2 1 6 6 C 1.37872 * 120.00511 * 95.31172 * 4 2 1 7 7 N 1.31511 * 120.00162 * 184.64951 * 6 4 2 8 8 Si 1.86802 * 119.99642 * 4.65579 * 6 4 2 9 9 H 1.48500 * 109.47076 * 85.01462 * 8 6 4 10 10 H 1.48498 * 109.47332 * 205.01462 * 8 6 4 11 11 H 1.48499 * 109.47111 * 325.01831 * 8 6 4 12 12 N 1.46499 * 109.46799 * 119.99708 * 2 1 3 13 13 C 1.46501 * 120.00078 * 60.00521 * 12 2 1 14 14 C 1.34777 * 120.00106 * 239.99781 * 12 2 1 15 15 O 1.21280 * 119.99542 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 12 2 17 17 H 1.09001 * 115.54618 * 34.42249 * 16 14 12 18 18 C 1.52996 * 117.49923 * 248.74961 * 16 14 12 19 19 C 1.53005 * 117.49797 * 180.08800 * 16 14 12 20 20 H 1.09002 * 117.49757 * 0.02562 * 19 16 14 21 21 C 1.50700 * 117.49555 * 214.98375 * 19 16 14 22 22 C 1.38339 * 119.93643 * 299.72185 * 21 19 16 23 23 C 1.38303 * 120.23224 * 179.72806 * 22 21 19 24 24 C 1.38053 * 120.11413 * 0.55479 * 23 22 21 25 25 C 1.39284 * 119.88083 * 359.72061 * 24 23 22 26 26 C 1.48469 * 120.11444 * 180.02562 * 25 24 23 27 27 N 1.34043 * 126.67376 * 180.02562 * 26 25 24 28 28 N 1.28980 * 107.26874 * 180.02562 * 27 26 25 29 29 N 1.28733 * 108.94472 * 359.97438 * 28 27 26 30 30 H 0.97006 * 125.34105 * 180.02562 * 29 28 27 31 31 N 1.28867 * 109.31520 * 359.73127 * 29 28 27 32 32 C 1.38003 * 119.94202 * 120.00407 * 21 19 16 33 33 H 1.08993 * 109.47514 * 293.98371 * 1 2 3 34 34 H 1.09002 * 109.47072 * 53.98796 * 1 2 3 35 35 H 1.09000 * 109.46938 * 173.98619 * 1 2 3 36 36 H 0.97004 * 119.99831 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47484 * 89.99461 * 13 12 2 38 38 H 1.09003 * 109.47200 * 209.99592 * 13 12 2 39 39 H 1.08999 * 109.46975 * 329.99655 * 13 12 2 40 40 H 1.08997 * 117.50067 * 0.02562 * 18 16 14 41 41 H 1.09005 * 117.49826 * 145.02274 * 18 16 14 42 42 H 1.07998 * 119.88639 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.93963 * 180.29846 * 23 22 21 44 44 H 1.07997 * 120.05548 * 179.74785 * 24 23 22 45 45 H 1.07997 * 120.05757 * 359.97248 * 32 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1349 -1.7856 -1.2292 6 6 2.3664 0.0126 -2.3559 7 7 2.7171 -0.6121 -3.4587 8 14 2.3208 1.8796 -2.3141 9 1 3.6058 2.3942 -1.7763 10 1 2.1158 2.4007 -3.6895 11 1 1.2047 2.3282 -1.4433 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7461 3.3136 17 1 3.5243 -1.8041 3.1850 18 6 2.7307 -0.3045 4.6650 19 6 4.1695 0.0525 4.2832 20 1 4.3801 1.0919 4.0315 21 6 5.2794 -0.6841 4.9878 22 6 4.9832 -1.7570 5.8093 23 6 5.9976 -2.4409 6.4544 24 6 7.3109 -2.0485 6.2904 25 6 7.6140 -0.9653 5.4689 26 6 9.0248 -0.5392 5.2884 27 7 9.4634 0.4785 4.5342 28 7 10.7477 0.5133 4.6477 29 7 11.1235 -0.4329 5.4356 30 1 12.0410 -0.6229 5.6866 31 7 10.0890 -1.0842 5.8433 32 6 6.5889 -0.2835 4.8169 33 1 -0.3634 0.4177 0.9388 34 1 -0.3633 0.6042 -0.8313 35 1 -0.3633 -1.0220 -0.1077 36 1 2.9525 -0.1034 -4.2504 37 1 2.4157 -2.7377 0.9718 38 1 1.6238 -2.2852 2.5003 39 1 0.6905 -2.3002 0.9847 40 1 1.9949 0.4997 4.6643 41 1 2.5876 -1.0719 5.4258 42 1 3.9568 -2.0647 5.9436 43 1 5.7614 -3.2809 7.0909 44 1 8.1019 -2.5807 6.7979 45 1 6.8186 0.5568 4.1786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:14 Heat of formation + Delta-G solvation = 119.660165 kcal Electronic energy + Delta-G solvation = -28414.078454 eV Core-core repulsion = 24434.647715 eV Total energy + Delta-G solvation = -3979.430739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.50734 -41.31167 -40.22579 -37.83712 -36.84534 -35.43772 -34.71328 -34.49364 -32.35023 -31.85069 -31.20832 -27.66251 -27.25002 -26.06410 -25.74973 -25.42190 -24.16172 -23.03429 -22.19581 -21.08753 -20.12888 -19.69157 -19.24175 -18.39772 -18.18992 -17.51919 -17.31500 -16.50619 -16.40628 -16.06863 -15.77524 -15.40655 -15.08682 -14.92036 -14.56547 -14.43427 -14.21420 -14.09601 -13.87722 -13.55511 -13.41005 -13.29556 -13.07389 -12.90772 -12.87590 -12.54891 -12.50994 -12.47509 -12.31784 -12.28368 -12.14828 -11.85773 -11.85021 -11.46940 -11.43320 -11.27552 -10.81142 -10.63915 -9.73799 -9.49817 -9.32959 -8.39228 -6.42237 -0.29614 0.13839 0.36394 1.23968 1.28816 1.31372 1.38962 1.39157 1.65676 2.24797 2.29307 2.62519 2.70164 3.02638 3.09127 3.15097 3.55312 3.75462 3.90437 3.94987 4.09680 4.14370 4.21134 4.29967 4.38576 4.43233 4.47260 4.52106 4.65933 4.69090 4.76113 4.78647 4.83460 4.95736 5.03467 5.05460 5.05784 5.13844 5.18585 5.38851 5.45495 5.49078 5.53720 5.59034 5.65168 5.84414 5.96836 6.15567 6.62955 6.78785 7.07232 7.23031 7.40794 8.76394 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002666 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.055726 B =10498.867876 C =11921.094816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.219 3.781 3 H 0.036 0.964 4 C -0.518 4.518 5 H 0.053 0.947 6 C 0.028 3.972 7 N -0.935 5.935 8 Si 0.924 3.076 9 H -0.289 1.289 10 H -0.275 1.275 11 H -0.249 1.249 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.521 3.479 15 O -0.607 6.607 16 C -0.179 4.179 17 H 0.146 0.854 18 C -0.109 4.109 19 C -0.098 4.098 20 H 0.096 0.904 21 C -0.056 4.056 22 C -0.090 4.090 23 C -0.108 4.108 24 C -0.083 4.083 25 C -0.035 4.035 26 C 0.210 3.790 27 N -0.305 5.305 28 N -0.061 5.061 29 N -0.199 5.199 30 H 0.495 0.505 31 N -0.289 5.289 32 C -0.088 4.088 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.268 0.732 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.148 0.852 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -7.310 27.545 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.117 3.883 3 H 0.054 0.946 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.749 3.251 9 H -0.215 1.215 10 H -0.200 1.200 11 H -0.173 1.173 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.311 3.689 15 O -0.491 6.491 16 C -0.200 4.200 17 H 0.164 0.836 18 C -0.146 4.146 19 C -0.117 4.117 20 H 0.114 0.886 21 C -0.056 4.056 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.103 4.103 25 C -0.038 4.038 26 C -0.070 4.070 27 N -0.177 5.177 28 N -0.055 5.055 29 N -0.050 5.050 30 H 0.354 0.646 31 N -0.142 5.142 32 C -0.108 4.108 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.187 0.813 44 H 0.165 0.835 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.986 -6.318 26.965 29.117 hybrid contribution 0.868 0.897 -1.021 1.612 sum 9.854 -5.421 25.944 28.277 Atomic orbital electron populations 1.22056 0.95531 1.01962 1.00065 1.19134 0.92841 0.93381 0.82992 0.94556 1.21382 1.43299 0.94764 0.96199 0.92833 1.25615 0.94200 1.02057 0.95239 1.69984 1.47344 1.37455 1.02623 0.86106 0.79393 0.82046 0.77517 1.21540 1.20039 1.17302 1.48201 1.48995 1.13493 1.21675 1.21831 1.01168 0.80078 1.02811 1.20457 0.77681 0.86117 0.84686 1.90604 1.60272 1.19844 1.78339 1.22357 1.07229 1.00965 0.89405 0.83616 1.23308 0.93865 1.03764 0.93628 1.20957 0.91507 0.98696 1.00561 0.88604 1.18979 0.91692 0.96934 0.97996 1.21591 1.01816 0.93175 0.94241 1.21462 0.90933 1.00479 0.99671 1.21403 0.98668 0.94125 0.96082 1.17321 0.84727 0.99277 1.02513 1.23962 0.95647 0.92317 0.95053 1.76146 1.01110 1.19502 1.20958 1.78881 1.07018 1.09916 1.09735 1.47802 1.11927 1.17515 1.27739 0.64583 1.74844 0.94088 1.22079 1.23184 1.20954 0.92173 0.99475 0.98228 0.93121 0.93333 0.91625 0.92284 0.93862 0.87719 0.90715 0.88334 0.83021 0.82034 0.81331 0.83470 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 9.03 71.98 0.65 -4.94 16 2 C 0.22 10.64 2.30 44.25 0.10 10.74 16 3 H 0.04 1.98 4.04 -2.39 -0.01 1.97 16 4 C -0.52 -29.36 8.82 25.60 0.23 -29.13 16 5 H 0.05 3.23 7.67 -2.91 -0.02 3.21 16 6 C 0.03 1.68 5.47 84.65 0.46 2.15 16 7 N -0.93 -58.46 13.96 21.45 0.30 -58.16 16 8 Si 0.92 47.81 26.99 68.60 1.85 49.66 16 9 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.25 -12.17 6.82 99.48 0.68 -11.49 16 12 N -0.59 -24.27 2.75 -826.80 -2.28 -26.55 16 13 C 0.08 2.51 9.11 127.77 1.16 3.67 16 14 C 0.52 21.02 7.46 87.66 0.65 21.67 16 15 O -0.61 -30.37 15.59 -3.03 -0.05 -30.41 16 16 C -0.18 -4.82 4.43 -11.54 -0.05 -4.87 16 17 H 0.15 3.25 7.27 -2.39 -0.02 3.23 16 18 C -0.11 -2.03 9.56 30.62 0.29 -1.74 16 19 C -0.10 -2.51 5.55 -11.51 -0.06 -2.57 16 20 H 0.10 3.07 7.67 -2.39 -0.02 3.05 16 21 C -0.06 -1.21 5.61 -19.90 -0.11 -1.32 16 22 C -0.09 -1.25 9.30 22.31 0.21 -1.04 16 23 C -0.11 -1.26 10.04 22.24 0.22 -1.04 16 24 C -0.08 -1.31 9.70 22.48 0.22 -1.09 16 25 C -0.04 -0.79 5.88 -20.04 -0.12 -0.91 16 26 C 0.21 5.09 7.94 137.38 1.09 6.18 16 27 N -0.31 -8.54 12.23 -52.18 -0.64 -9.18 16 28 N -0.06 -1.35 13.47 37.02 0.50 -0.86 16 29 N -0.20 -2.87 7.90 37.02 0.29 -2.58 16 30 H 0.49 1.74 8.96 -347.53 -3.12 -1.38 16 31 N -0.29 -5.43 12.08 -52.13 -0.63 -6.06 16 32 C -0.09 -2.25 9.39 22.47 0.21 -2.03 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 2.44 6.92 -2.39 -0.02 2.42 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 2.13 6.64 -2.39 -0.02 2.12 16 39 H 0.07 2.19 6.55 -2.39 -0.02 2.17 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.15 1.42 6.16 -2.38 -0.01 1.40 16 42 H 0.16 1.19 6.00 -2.91 -0.02 1.17 16 43 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 44 H 0.15 1.80 7.88 -2.91 -0.02 1.78 16 45 H 0.11 3.32 7.89 -2.91 -0.02 3.30 16 Total: -1.00 -84.80 378.16 2.42 -82.38 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -2.09 Total: 8.04 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.16 Total: -6.28 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -2.45 Total: -103.39 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.05 Total: -30.41 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.85 Total: 49.66 kcal Total: -84.80 2.42 -82.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.039 kcal (2) G-P(sol) polarization free energy of solvation -84.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds