Wall clock time and date at job start Wed Apr 1 2020 00:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47197 * 2 1 4 4 C 1.50694 * 109.47463 * 240.00156 * 2 1 3 5 5 H 1.08003 * 120.00157 * 239.99809 * 4 2 1 6 6 C 1.37881 * 120.00284 * 59.99994 * 4 2 1 7 7 N 1.31517 * 119.99454 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00275 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47073 * 59.99858 * 8 6 4 10 10 H 1.48501 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47018 * 299.99915 * 8 6 4 12 12 N 1.46497 * 109.47206 * 119.99827 * 2 1 3 13 13 C 1.46505 * 119.99891 * 60.00306 * 12 2 1 14 14 C 1.34784 * 120.00294 * 240.00516 * 12 2 1 15 15 O 1.21277 * 119.99751 * 5.56162 * 14 12 2 16 16 C 1.50699 * 120.00138 * 185.56759 * 14 12 2 17 17 C 1.50703 * 115.54790 * 65.95921 * 16 14 12 18 18 C 1.38312 * 119.88611 * 29.54358 * 17 16 14 19 19 C 1.38029 * 120.12087 * 179.97438 * 18 17 16 20 20 C 1.39300 * 119.87931 * 0.02562 * 19 18 17 21 21 C 1.48459 * 120.11825 * 179.97438 * 20 19 18 22 22 N 1.34048 * 126.67320 * 0.02562 * 21 20 19 23 23 N 1.28979 * 107.26982 * 179.73817 * 22 21 20 24 24 N 1.28727 * 108.94484 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.34397 * 179.97438 * 24 23 22 26 26 N 1.28869 * 109.31713 * 0.02562 * 24 23 22 27 27 C 1.39306 * 119.76511 * 0.24764 * 20 19 18 28 28 C 1.38030 * 119.88031 * 359.47229 * 27 20 19 29 29 C 1.52992 * 117.49981 * 211.63046 * 16 14 12 30 30 C 1.52993 * 117.49671 * 280.29076 * 16 14 12 31 31 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47432 * 300.00086 * 1 2 3 33 33 H 1.09001 * 109.46876 * 60.00330 * 1 2 3 34 34 H 0.97005 * 119.99400 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.46627 * 264.78662 * 13 12 2 36 36 H 1.08993 * 109.46933 * 24.78981 * 13 12 2 37 37 H 1.09001 * 109.46668 * 144.78707 * 13 12 2 38 38 H 1.07999 * 119.93738 * 0.02562 * 18 17 16 39 39 H 1.07999 * 120.05861 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.05636 * 179.73316 * 27 20 19 41 41 H 1.08001 * 119.93777 * 180.27065 * 28 27 20 42 42 H 1.08993 * 117.50325 * 214.99979 * 29 16 14 43 43 H 1.09005 * 117.49621 * 0.02585 * 29 16 14 44 44 H 1.09004 * 117.50343 * 359.97438 * 30 16 14 45 45 H 1.09006 * 117.50032 * 144.99744 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8261 -0.4205 -5.2205 11 1 3.8065 -1.1208 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0032 1.1509 1.9452 16 6 3.3985 -0.7774 3.2471 17 6 4.4231 -1.8229 2.8892 18 6 5.1940 -1.6712 1.7509 19 6 6.1342 -2.6255 1.4187 20 6 6.3057 -3.7433 2.2321 21 6 7.3150 -4.7734 1.8796 22 7 8.1307 -4.7639 0.8159 23 7 8.8535 -5.8303 0.8782 24 7 8.5244 -6.4975 1.9287 25 1 8.9189 -7.3394 2.2052 26 7 7.5877 -5.8720 2.5549 27 6 5.5227 -3.8941 3.3744 28 6 4.5894 -2.9308 3.7004 29 6 3.6066 -0.0008 4.5488 30 6 2.4993 -1.0534 4.4537 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7088 1.1613 -3.4844 35 1 0.7900 -2.1448 2.0766 36 1 1.4393 -2.5732 0.4757 37 1 2.5008 -2.6049 1.9041 38 1 5.0605 -0.8039 1.1212 39 1 6.7353 -2.5062 0.5294 40 1 5.6487 -4.7610 4.0060 41 1 3.9849 -3.0446 4.5881 42 1 4.4844 -0.2461 5.1464 43 1 3.3051 1.0466 4.5636 44 1 1.4699 -0.6980 4.4061 45 1 2.6488 -1.9912 4.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:10 Heat of formation + Delta-G solvation = 148.745451 kcal Electronic energy + Delta-G solvation = -29588.379729 eV Core-core repulsion = 25610.210222 eV Total energy + Delta-G solvation = -3978.169507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.61386 -40.41391 -38.62881 -36.49244 -35.23207 -34.48891 -33.57225 -32.75065 -31.04275 -30.41234 -29.37673 -26.13361 -25.36908 -25.18009 -24.91048 -23.60199 -22.70923 -21.96255 -21.61281 -20.15102 -19.36112 -18.21379 -17.30329 -17.24700 -16.58435 -16.21091 -15.54944 -15.29366 -14.86581 -14.64106 -14.45622 -14.05255 -13.98300 -13.45180 -13.36167 -13.12629 -12.80393 -12.51234 -12.39512 -12.25351 -11.78404 -11.71027 -11.56508 -11.49856 -11.47513 -11.32353 -11.17817 -11.03030 -10.96560 -10.82974 -10.72834 -10.47374 -10.33445 -10.21592 -10.13327 -9.19428 -8.97214 -8.95988 -8.43267 -8.38603 -7.56988 -6.05756 -4.13768 0.58061 1.03731 1.39189 2.04716 2.22362 3.19379 3.30517 3.35378 3.38560 3.53942 3.61430 3.82449 4.05110 4.11834 4.41486 4.51776 4.81347 4.91105 4.93726 5.04261 5.09431 5.24226 5.26956 5.29724 5.36461 5.56248 5.65456 5.67103 5.87398 5.91711 5.93411 6.04707 6.08998 6.15108 6.16706 6.33653 6.43399 6.46224 6.59552 6.77311 6.85490 6.86060 7.08257 7.44135 7.54164 7.73400 7.98008 8.02961 8.20924 8.54159 8.83882 9.05221 9.53026 10.99491 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.003901 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.765239 B = 7175.975278 C = 9502.153216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.581 5.581 13 C 0.084 3.916 14 C 0.542 3.458 15 O -0.548 6.548 16 C -0.122 4.122 17 C -0.008 4.008 18 C -0.101 4.101 19 C -0.065 4.065 20 C -0.032 4.032 21 C 0.228 3.772 22 N -0.266 5.266 23 N -0.051 5.051 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.299 5.299 27 C -0.076 4.076 28 C -0.125 4.125 29 C -0.135 4.135 30 C -0.158 4.158 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.093 0.907 34 H 0.264 0.736 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.158 -13.625 15.161 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.311 5.311 13 C -0.060 4.060 14 C 0.327 3.673 15 O -0.426 6.426 16 C -0.126 4.126 17 C -0.009 4.009 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.035 4.035 21 C -0.051 4.051 22 N -0.139 5.139 23 N -0.047 5.047 24 N -0.077 5.077 25 H 0.328 0.672 26 N -0.150 5.150 27 C -0.097 4.097 28 C -0.143 4.143 29 C -0.173 4.173 30 C -0.195 4.195 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.644 -13.156 14.508 21.831 hybrid contribution 0.198 -1.074 -0.586 1.240 sum 9.842 -14.231 13.922 22.208 Atomic orbital electron populations 1.22080 0.98220 0.99388 1.00762 1.18954 0.90948 0.94406 0.79787 0.91994 1.21283 1.31918 1.13058 0.90193 0.92174 1.24871 0.94892 0.94933 0.98896 1.69875 1.36265 1.22599 1.23853 0.86589 0.79393 0.79591 0.82055 1.20268 1.21195 1.20092 1.48140 1.48235 1.11704 1.23045 1.21635 0.98989 0.83224 1.02113 1.19100 0.79245 0.86646 0.82271 1.90657 1.61678 1.15212 1.75084 1.20302 1.00689 1.00679 0.90882 1.18965 0.94142 0.93291 0.94497 1.21085 0.94668 0.99634 0.96500 1.21165 0.97022 0.91767 0.98520 1.17208 0.95801 0.92685 0.97811 1.23753 0.98140 0.93326 0.89905 1.76135 1.05893 1.12054 1.19841 1.78921 1.18977 1.00777 1.05981 1.47713 1.23789 1.21037 1.15131 0.67218 1.74905 1.07917 1.08556 1.23648 1.21004 0.94418 0.98919 0.95313 1.20897 0.99254 0.93674 1.00506 1.23048 1.00229 0.98295 0.95679 1.23164 0.96711 1.01035 0.98585 0.95172 0.97066 0.88850 0.92640 0.94112 0.90180 0.92495 0.84603 0.84482 0.85058 0.85006 0.88022 0.87446 0.87987 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.15 0.33 -3.15 16 2 C 0.26 6.53 2.62 -69.09 -0.18 6.35 16 3 H 0.06 1.82 6.91 -51.93 -0.36 1.46 16 4 C -0.53 -14.01 7.96 -34.44 -0.27 -14.29 16 5 H 0.06 1.58 7.42 -52.48 -0.39 1.19 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.58 -12.20 2.75 -175.27 -0.48 -12.68 16 13 C 0.08 1.45 9.04 59.85 0.54 1.99 16 14 C 0.54 10.99 5.73 -10.98 -0.06 10.93 16 15 O -0.55 -13.31 16.05 5.56 0.09 -13.23 16 16 C -0.12 -1.83 1.37 -156.82 -0.22 -2.04 16 17 C -0.01 -0.11 3.55 -104.56 -0.37 -0.48 16 18 C -0.10 -1.56 9.30 -39.63 -0.37 -1.93 16 19 C -0.06 -0.91 9.70 -39.26 -0.38 -1.30 16 20 C -0.03 -0.41 5.88 -104.89 -0.62 -1.02 16 21 C 0.23 2.92 7.94 -156.31 -1.24 1.68 16 22 N -0.27 -3.65 12.23 32.15 0.39 -3.26 16 23 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 24 N -0.23 -1.87 7.90 60.35 0.48 -1.39 16 25 H 0.47 1.38 8.96 -340.38 -3.05 -1.67 16 26 N -0.30 -3.15 12.08 32.17 0.39 -2.76 16 27 C -0.08 -0.84 9.70 -39.26 -0.38 -1.22 16 28 C -0.13 -1.38 9.29 -39.63 -0.37 -1.75 16 29 C -0.14 -1.69 9.73 -26.70 -0.26 -1.95 16 30 C -0.16 -1.80 9.42 -26.70 -0.25 -2.06 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.48 7.10 -51.93 -0.37 1.11 16 37 H 0.06 0.87 5.37 -51.93 -0.28 0.59 16 38 H 0.14 2.44 7.31 -52.49 -0.38 2.06 16 39 H 0.14 1.91 7.89 -52.49 -0.41 1.50 16 40 H 0.13 1.19 7.88 -52.49 -0.41 0.78 16 41 H 0.13 1.12 5.94 -52.49 -0.31 0.80 16 42 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.11 1.47 8.00 -51.93 -0.42 1.06 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.10 0.90 6.10 -51.93 -0.32 0.58 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -33.14 375.68 -9.49 -42.63 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.24 Total: 1.62 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -4.19 Total: -8.53 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 2.22 Total: -44.25 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.14 -9.49 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.375 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds