Wall clock time and date at job start Wed Apr 1 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47197 * 2 1 4 4 C 1.50694 * 109.47463 * 240.00156 * 2 1 3 5 5 H 1.08003 * 120.00157 * 239.99809 * 4 2 1 6 6 C 1.37881 * 120.00284 * 59.99994 * 4 2 1 7 7 N 1.31517 * 119.99454 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00275 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47073 * 59.99858 * 8 6 4 10 10 H 1.48501 * 109.47175 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47018 * 299.99915 * 8 6 4 12 12 N 1.46497 * 109.47206 * 119.99827 * 2 1 3 13 13 C 1.46505 * 119.99891 * 60.00306 * 12 2 1 14 14 C 1.34784 * 120.00294 * 240.00516 * 12 2 1 15 15 O 1.21277 * 119.99751 * 5.56162 * 14 12 2 16 16 C 1.50699 * 120.00138 * 185.56759 * 14 12 2 17 17 C 1.50703 * 115.54790 * 65.95921 * 16 14 12 18 18 C 1.38312 * 119.88611 * 29.54358 * 17 16 14 19 19 C 1.38029 * 120.12087 * 179.97438 * 18 17 16 20 20 C 1.39300 * 119.87931 * 0.02562 * 19 18 17 21 21 C 1.48459 * 120.11825 * 179.97438 * 20 19 18 22 22 N 1.34048 * 126.67320 * 0.02562 * 21 20 19 23 23 N 1.28979 * 107.26982 * 179.73817 * 22 21 20 24 24 N 1.28727 * 108.94484 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.34397 * 179.97438 * 24 23 22 26 26 N 1.28869 * 109.31713 * 0.02562 * 24 23 22 27 27 C 1.39306 * 119.76511 * 0.24764 * 20 19 18 28 28 C 1.38030 * 119.88031 * 359.47229 * 27 20 19 29 29 C 1.52992 * 117.49981 * 211.63046 * 16 14 12 30 30 C 1.52993 * 117.49671 * 280.29076 * 16 14 12 31 31 H 1.09001 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47432 * 300.00086 * 1 2 3 33 33 H 1.09001 * 109.46876 * 60.00330 * 1 2 3 34 34 H 0.97005 * 119.99400 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.46627 * 264.78662 * 13 12 2 36 36 H 1.08993 * 109.46933 * 24.78981 * 13 12 2 37 37 H 1.09001 * 109.46668 * 144.78707 * 13 12 2 38 38 H 1.07999 * 119.93738 * 0.02562 * 18 17 16 39 39 H 1.07999 * 120.05861 * 179.97438 * 19 18 17 40 40 H 1.07996 * 120.05636 * 179.73316 * 27 20 19 41 41 H 1.08001 * 119.93777 * 180.27065 * 28 27 20 42 42 H 1.08993 * 117.50325 * 214.99979 * 29 16 14 43 43 H 1.09005 * 117.49621 * 0.02585 * 29 16 14 44 44 H 1.09004 * 117.50343 * 359.97438 * 30 16 14 45 45 H 1.09006 * 117.50032 * 144.99744 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8261 -0.4205 -5.2205 11 1 3.8065 -1.1208 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0032 1.1509 1.9452 16 6 3.3985 -0.7774 3.2471 17 6 4.4231 -1.8229 2.8892 18 6 5.1940 -1.6712 1.7509 19 6 6.1342 -2.6255 1.4187 20 6 6.3057 -3.7433 2.2321 21 6 7.3150 -4.7734 1.8796 22 7 8.1307 -4.7639 0.8159 23 7 8.8535 -5.8303 0.8782 24 7 8.5244 -6.4975 1.9287 25 1 8.9189 -7.3394 2.2052 26 7 7.5877 -5.8720 2.5549 27 6 5.5227 -3.8941 3.3744 28 6 4.5894 -2.9308 3.7004 29 6 3.6066 -0.0008 4.5488 30 6 2.4993 -1.0534 4.4537 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7088 1.1613 -3.4844 35 1 0.7900 -2.1448 2.0766 36 1 1.4393 -2.5732 0.4757 37 1 2.5008 -2.6049 1.9041 38 1 5.0605 -0.8039 1.1212 39 1 6.7353 -2.5062 0.5294 40 1 5.6487 -4.7610 4.0060 41 1 3.9849 -3.0446 4.5881 42 1 4.4844 -0.2461 5.1464 43 1 3.3051 1.0466 4.5636 44 1 1.4699 -0.6980 4.4061 45 1 2.6488 -1.9912 4.9888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:09 Heat of formation + Delta-G solvation = 127.372827 kcal Electronic energy + Delta-G solvation = -29589.306516 eV Core-core repulsion = 25610.210222 eV Total energy + Delta-G solvation = -3979.096293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.46327 -41.65901 -39.92309 -37.75953 -36.95750 -35.36479 -34.72240 -34.46246 -32.05126 -31.50046 -31.14980 -27.61742 -27.30670 -26.43699 -25.79201 -24.81849 -23.73149 -22.96041 -22.77358 -21.67897 -20.18087 -19.65336 -18.51539 -18.31956 -18.14124 -17.64015 -17.25596 -16.45255 -16.37252 -15.86691 -15.72306 -15.34027 -15.10658 -14.84315 -14.46389 -14.38287 -14.16992 -13.91160 -13.73490 -13.54264 -13.37768 -13.08162 -12.88941 -12.83128 -12.77284 -12.67280 -12.44011 -12.43173 -12.25775 -12.20270 -12.15199 -12.11389 -11.91733 -11.53002 -11.33273 -11.20303 -10.63256 -10.45691 -9.95523 -9.42131 -9.30242 -8.15326 -6.31129 -0.34696 0.16285 0.40913 1.26279 1.39300 1.41779 1.43324 1.48678 1.71251 2.28630 2.45709 2.61553 2.65901 3.04168 3.12725 3.16614 3.47196 3.64175 3.84059 3.99294 4.04243 4.14206 4.19576 4.37953 4.43042 4.50625 4.57555 4.66211 4.74678 4.76053 4.78551 4.90080 4.93988 4.98891 5.04015 5.07846 5.08732 5.25484 5.36653 5.42617 5.47097 5.56714 5.62727 5.63642 5.67455 5.87206 6.04567 6.16702 6.76478 6.84609 7.11679 7.31477 7.48389 8.88948 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.003901 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.765239 B = 7175.975278 C = 9502.153216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.006 0.994 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.588 5.588 13 C 0.085 3.915 14 C 0.534 3.466 15 O -0.605 6.605 16 C -0.144 4.144 17 C -0.011 4.011 18 C -0.125 4.125 19 C -0.076 4.076 20 C -0.034 4.034 21 C 0.213 3.787 22 N -0.303 5.303 23 N -0.060 5.060 24 N -0.198 5.198 25 H 0.495 0.505 26 N -0.286 5.286 27 C -0.061 4.061 28 C -0.106 4.106 29 C -0.133 4.133 30 C -0.124 4.124 31 H 0.046 0.954 32 H 0.020 0.980 33 H 0.067 0.933 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 -17.754 18.190 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.317 5.317 13 C -0.057 4.057 14 C 0.323 3.677 15 O -0.487 6.487 16 C -0.147 4.147 17 C -0.012 4.012 18 C -0.144 4.144 19 C -0.096 4.096 20 C -0.037 4.037 21 C -0.067 4.067 22 N -0.175 5.175 23 N -0.054 5.054 24 N -0.049 5.049 25 H 0.354 0.646 26 N -0.138 5.138 27 C -0.081 4.081 28 C -0.123 4.123 29 C -0.170 4.170 30 C -0.161 4.161 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.181 0.819 41 H 0.192 0.808 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.860 -17.342 17.552 26.571 hybrid contribution 0.219 0.179 -1.482 1.508 sum 10.079 -17.163 16.071 25.582 Atomic orbital electron populations 1.21860 0.97110 1.00073 0.99913 1.18511 0.91693 0.91987 0.81596 0.97585 1.21513 1.31781 1.12974 0.91103 0.92343 1.25655 0.95055 0.95581 1.01759 1.70013 1.37273 1.23834 1.24435 0.85619 0.78425 0.79095 0.78580 1.18810 1.20688 1.20459 1.48094 1.48474 1.13173 1.21965 1.21806 1.01060 0.80763 1.02110 1.20055 0.78110 0.86289 0.83250 1.90612 1.63306 1.18077 1.76730 1.20083 1.02911 1.02111 0.89603 1.18905 0.93702 0.94148 0.94488 1.20802 0.96845 0.99047 0.97692 1.21011 0.97070 0.92616 0.98890 1.17308 0.96192 0.92016 0.98199 1.23764 0.98565 0.94101 0.90234 1.76130 1.06993 1.13326 1.21065 1.78870 1.19007 1.00704 1.06869 1.47793 1.22324 1.21088 1.13735 0.64564 1.74849 1.08021 1.07766 1.23186 1.21346 0.92958 0.99518 0.94284 1.21211 0.98865 0.91541 1.00672 1.23171 1.02145 0.97706 0.94001 1.23405 0.95824 1.02193 0.94679 0.93483 0.96141 0.91414 0.92627 0.91281 0.91724 0.90129 0.89074 0.85846 0.81943 0.80820 0.85084 0.89609 0.88353 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.80 16 2 C 0.26 14.06 2.62 44.24 0.12 14.18 16 3 H 0.01 0.39 6.91 -2.39 -0.02 0.38 16 4 C -0.54 -29.73 7.96 25.60 0.20 -29.53 16 5 H 0.06 3.19 7.42 -2.91 -0.02 3.17 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.57 16 8 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 N -0.59 -25.42 2.75 -826.82 -2.28 -27.70 16 13 C 0.08 2.82 9.04 127.77 1.15 3.97 16 14 C 0.53 22.58 5.73 87.66 0.50 23.09 16 15 O -0.60 -31.78 16.05 -3.02 -0.05 -31.82 16 16 C -0.14 -4.12 1.37 -53.68 -0.07 -4.19 16 17 C -0.01 -0.29 3.55 -19.83 -0.07 -0.36 16 18 C -0.13 -4.05 9.30 22.24 0.21 -3.85 16 19 C -0.08 -2.21 9.70 22.48 0.22 -1.99 16 20 C -0.03 -0.81 5.88 -20.04 -0.12 -0.93 16 21 C 0.21 5.06 7.94 137.38 1.09 6.15 16 22 N -0.30 -8.12 12.23 -52.18 -0.64 -8.76 16 23 N -0.06 -1.25 13.47 37.02 0.50 -0.75 16 24 N -0.20 -2.64 7.90 37.02 0.29 -2.35 16 25 H 0.50 1.20 8.96 -347.55 -3.12 -1.91 16 26 N -0.29 -5.10 12.08 -52.13 -0.63 -5.73 16 27 C -0.06 -1.08 9.70 22.48 0.22 -0.86 16 28 C -0.11 -1.81 9.29 22.24 0.21 -1.60 16 29 C -0.13 -3.04 9.73 30.61 0.30 -2.75 16 30 C -0.12 -2.32 9.42 30.61 0.29 -2.03 16 31 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 34 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.34 7.10 -2.39 -0.02 2.33 16 37 H 0.08 2.27 5.37 -2.39 -0.01 2.26 16 38 H 0.09 3.69 7.31 -2.91 -0.02 3.67 16 39 H 0.12 3.78 7.89 -2.91 -0.02 3.76 16 40 H 0.16 1.93 7.88 -2.91 -0.02 1.91 16 41 H 0.17 1.55 5.94 -2.91 -0.02 1.53 16 42 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.35 8.00 -2.38 -0.02 2.33 16 44 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.15 1.45 6.10 -2.38 -0.01 1.43 16 Total: -1.00 -79.69 375.68 2.74 -76.95 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -2.06 Total: 12.36 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.34 Total: -4.98 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -2.51 Total: -98.85 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -79.69 2.74 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.318 kcal (2) G-P(sol) polarization free energy of solvation -79.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds