Wall clock time and date at job start Wed Apr 1 2020 00:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.50700 * 109.47207 * 119.99779 * 2 1 3 5 5 H 1.07998 * 120.00152 * 114.35709 * 4 2 1 6 6 C 1.37878 * 119.99799 * 294.36382 * 4 2 1 7 7 N 1.31508 * 120.00166 * 157.10793 * 6 4 2 8 8 Si 1.86801 * 119.99967 * 337.10014 * 6 4 2 9 9 H 1.48505 * 109.47101 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47196 * 300.00374 * 8 6 4 11 11 H 1.48504 * 109.47110 * 60.00592 * 8 6 4 12 12 N 1.46500 * 109.47108 * 239.99667 * 2 1 3 13 13 C 1.46498 * 120.00129 * 299.99902 * 12 2 1 14 14 C 1.34775 * 119.99809 * 120.00101 * 12 2 1 15 15 O 1.21290 * 120.00483 * 3.92762 * 14 12 2 16 16 C 1.50696 * 120.00239 * 183.92509 * 14 12 2 17 17 C 1.50710 * 115.54934 * 277.63963 * 16 14 12 18 18 C 1.38317 * 119.88050 * 148.60860 * 17 16 14 19 19 C 1.38027 * 120.11465 * 179.72262 * 18 17 16 20 20 C 1.39302 * 119.87717 * 0.56801 * 19 18 17 21 21 C 1.48464 * 120.11259 * 179.68197 * 20 19 18 22 22 N 1.34056 * 126.67292 * 180.02562 * 21 20 19 23 23 N 1.28988 * 107.26760 * 179.97438 * 22 21 20 24 24 N 1.28729 * 108.94206 * 359.97438 * 23 22 21 25 25 H 0.97002 * 125.33922 * 180.02562 * 24 23 22 26 26 N 1.28872 * 109.32109 * 359.75453 * 24 23 22 27 27 C 1.39290 * 119.77294 * 359.70451 * 20 19 18 28 28 C 1.38035 * 119.87819 * 359.97438 * 27 20 19 29 29 C 1.53002 * 117.50369 * 131.93104 * 16 14 12 30 30 C 1.53000 * 117.50112 * 63.30474 * 16 14 12 31 31 H 1.09001 * 109.47358 * 52.71943 * 1 2 3 32 32 H 1.09001 * 109.47374 * 172.71433 * 1 2 3 33 33 H 1.08994 * 109.47586 * 292.71977 * 1 2 3 34 34 H 0.96999 * 120.00308 * 354.89682 * 7 6 4 35 35 H 1.09003 * 109.46887 * 94.41735 * 13 12 2 36 36 H 1.09000 * 109.46918 * 214.41527 * 13 12 2 37 37 H 1.08994 * 109.47011 * 334.41405 * 13 12 2 38 38 H 1.08000 * 119.93975 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.06069 * 180.27784 * 19 18 17 40 40 H 1.07996 * 120.06335 * 179.97438 * 27 20 19 41 41 H 1.08000 * 119.93977 * 179.97438 * 28 27 20 42 42 H 1.08998 * 117.49486 * 359.97438 * 29 16 14 43 43 H 1.08999 * 117.50286 * 145.02078 * 29 16 14 44 44 H 1.09002 * 117.50199 * 214.98196 * 30 16 14 45 45 H 1.09001 * 117.49632 * 0.02562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5760 -1.6385 1.1341 6 6 1.7977 -0.1754 2.4794 7 7 1.8122 -0.9518 3.5407 8 14 1.4594 1.6525 2.6640 9 1 1.2416 1.9733 4.0975 10 1 2.6213 2.4248 2.1553 11 1 0.2468 2.0125 1.8860 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1451 1.1027 -1.8569 16 6 3.2224 -0.7178 -3.3566 17 6 4.4200 -1.6248 -3.2363 18 6 4.5247 -2.7392 -4.0489 19 6 5.6222 -3.5701 -3.9467 20 6 6.6194 -3.2911 -3.0150 21 6 7.7986 -4.1852 -2.8958 22 7 8.8289 -4.0431 -2.0500 23 7 9.6378 -5.0249 -2.2635 24 7 9.1570 -5.7665 -3.1995 25 1 9.5734 -6.5702 -3.5482 26 7 8.0331 -5.2767 -3.5966 27 6 6.5062 -2.1707 -2.1953 28 6 5.4078 -1.3427 -2.3103 29 6 3.0505 0.0561 -4.6653 30 6 2.1272 -1.1214 -4.3458 31 1 -0.3634 0.6225 -0.8177 32 1 -0.3634 -1.0194 -0.1303 33 1 -0.3634 0.3969 0.9478 34 1 1.9142 -1.9110 3.4386 35 1 0.7815 -2.1447 -2.0651 36 1 2.4955 -2.6016 -1.9168 37 1 1.4530 -2.5769 -0.4743 38 1 3.7484 -2.9574 -4.7673 39 1 5.7052 -4.4375 -4.5848 40 1 7.2764 -1.9502 -1.4710 41 1 5.3188 -0.4739 -1.6749 42 1 2.6265 1.0584 -4.6052 43 1 3.8037 -0.0906 -5.4395 44 1 2.2729 -2.0427 -4.9098 45 1 1.0961 -0.8931 -4.0757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:12 Heat of formation + Delta-G solvation = 148.328348 kcal Electronic energy + Delta-G solvation = -29437.436043 eV Core-core repulsion = 25459.248450 eV Total energy + Delta-G solvation = -3978.187594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.64337 -40.48093 -38.76035 -36.59508 -35.41558 -34.52925 -33.61932 -32.73426 -31.09995 -30.47476 -30.10764 -26.29263 -25.47738 -24.96622 -24.77067 -23.63418 -22.80159 -22.01500 -21.64812 -20.06624 -19.39369 -18.27577 -17.48848 -17.33303 -17.27454 -16.49722 -15.67135 -15.43754 -14.95971 -14.71694 -14.26578 -14.12942 -13.86995 -13.49487 -13.40205 -13.15589 -12.92495 -12.69852 -12.55819 -12.36472 -11.93454 -11.86849 -11.78679 -11.58440 -11.56235 -11.45168 -11.39948 -11.31632 -11.22870 -11.02153 -10.58411 -10.50337 -10.39313 -10.08289 -9.77691 -9.16693 -9.06680 -9.02471 -8.49377 -8.28825 -7.77921 -6.49008 -4.11440 0.53675 1.00212 1.33583 2.01897 2.18031 3.12386 3.40780 3.46537 3.50714 3.51282 3.63145 3.70832 4.01157 4.01769 4.43837 4.49152 4.74962 4.79114 4.87521 4.95470 5.04091 5.16173 5.20659 5.25596 5.30627 5.49939 5.57464 5.59640 5.77863 5.81166 5.84887 5.95073 5.98681 6.06539 6.12126 6.27556 6.29923 6.37499 6.39014 6.42731 6.53631 6.60124 6.80415 6.94070 7.15518 7.44086 7.86384 7.94746 8.29960 8.35415 8.75723 8.94439 9.53770 10.85965 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003264 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.419276 B = 8575.929529 C =10026.792488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.616 4.616 5 H 0.063 0.937 6 C 0.044 3.956 7 N -0.893 5.893 8 Si 1.030 2.970 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.577 5.577 13 C 0.088 3.912 14 C 0.543 3.457 15 O -0.547 6.547 16 C -0.120 4.120 17 C -0.010 4.010 18 C -0.123 4.123 19 C -0.077 4.077 20 C -0.030 4.030 21 C 0.227 3.773 22 N -0.266 5.266 23 N -0.050 5.050 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.298 5.298 27 C -0.066 4.066 28 C -0.103 4.103 29 C -0.135 4.135 30 C -0.160 4.160 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.269 0.731 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -9.254 -19.668 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.133 3.867 3 H 0.071 0.929 4 C -0.654 4.654 5 H 0.081 0.919 6 C -0.163 4.163 7 N -0.526 5.526 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.056 4.056 14 C 0.328 3.672 15 O -0.425 6.425 16 C -0.123 4.123 17 C -0.011 4.011 18 C -0.141 4.141 19 C -0.097 4.097 20 C -0.033 4.033 21 C -0.052 4.052 22 N -0.139 5.139 23 N -0.046 5.046 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.150 5.150 27 C -0.086 4.086 28 C -0.121 4.121 29 C -0.172 4.172 30 C -0.197 4.197 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.565 -7.692 -18.098 21.070 hybrid contribution 0.189 -1.891 -1.406 2.364 sum 7.754 -9.583 -19.504 23.073 Atomic orbital electron populations 1.22431 0.98661 1.00105 1.00143 1.19199 0.90307 0.94649 0.82497 0.92868 1.22086 1.41298 1.11158 0.90820 0.91926 1.25603 0.93248 1.05630 0.91838 1.70858 1.43580 1.06388 1.31760 0.84240 0.77648 0.76201 0.76156 1.20945 1.20444 1.20253 1.47891 1.48522 1.11685 1.22516 1.21610 0.99016 0.82771 1.02225 1.19155 0.78934 0.85880 0.83203 1.90659 1.56056 1.18637 1.77149 1.20211 0.97278 1.02771 0.92022 1.18940 0.93146 0.93684 0.95336 1.20902 0.98291 0.94467 1.00457 1.21019 0.92507 0.99261 0.96898 1.17214 0.90982 0.94661 1.00464 1.23741 0.96517 0.92742 0.92212 1.76136 1.01664 1.15179 1.20958 1.78926 1.20984 0.99544 1.05118 1.47717 1.12889 1.22877 1.24132 0.67175 1.74906 1.02806 1.12398 1.24852 1.21167 0.97934 0.92279 0.97202 1.21109 0.92833 1.00090 0.98053 1.23050 1.01888 0.97268 0.95005 1.23211 0.95816 0.99811 1.00896 0.95661 0.93476 0.91919 0.92068 0.93897 0.92498 0.90058 0.84943 0.84969 0.84452 0.84561 0.87711 0.87868 0.87616 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.02 37.16 0.34 -3.00 16 2 C 0.24 5.64 2.22 -69.08 -0.15 5.49 16 3 H 0.05 1.40 5.48 -51.93 -0.28 1.12 16 4 C -0.62 -16.83 8.27 -34.44 -0.28 -17.12 16 5 H 0.06 1.83 7.45 -52.49 -0.39 1.44 16 6 C 0.04 1.24 5.19 -17.82 -0.09 1.15 16 7 N -0.89 -26.73 13.69 55.43 0.76 -25.97 16 8 Si 1.03 25.31 26.43 -169.99 -4.49 20.82 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.28 6.14 56.52 0.35 -5.93 16 12 N -0.58 -11.83 2.75 -175.27 -0.48 -12.31 16 13 C 0.09 1.48 8.26 59.85 0.49 1.98 16 14 C 0.54 10.71 5.69 -10.99 -0.06 10.65 16 15 O -0.55 -12.83 16.34 5.55 0.09 -12.74 16 16 C -0.12 -1.74 1.28 -156.81 -0.20 -1.94 16 17 C -0.01 -0.13 4.37 -104.56 -0.46 -0.59 16 18 C -0.12 -1.35 9.36 -39.63 -0.37 -1.72 16 19 C -0.08 -0.84 9.70 -39.26 -0.38 -1.22 16 20 C -0.03 -0.38 5.88 -104.90 -0.62 -1.00 16 21 C 0.23 2.89 7.94 -156.30 -1.24 1.65 16 22 N -0.27 -3.62 12.23 32.16 0.39 -3.23 16 23 N -0.05 -0.56 13.47 60.35 0.81 0.25 16 24 N -0.23 -1.85 7.90 60.35 0.48 -1.37 16 25 H 0.47 1.34 8.96 -340.37 -3.05 -1.71 16 26 N -0.30 -3.13 12.08 32.17 0.39 -2.74 16 27 C -0.07 -0.92 9.70 -39.26 -0.38 -1.30 16 28 C -0.10 -1.59 9.31 -39.63 -0.37 -1.95 16 29 C -0.13 -1.60 9.86 -26.73 -0.26 -1.86 16 30 C -0.16 -1.74 8.60 -26.73 -0.23 -1.97 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.94 7.44 -51.93 -0.39 0.56 16 33 H 0.06 1.41 5.46 -51.93 -0.28 1.12 16 34 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 35 H 0.04 0.61 7.99 -51.93 -0.41 0.19 16 36 H 0.06 0.87 6.24 -51.93 -0.32 0.54 16 37 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 38 H 0.13 1.10 5.92 -52.49 -0.31 0.79 16 39 H 0.13 1.19 7.88 -52.49 -0.41 0.78 16 40 H 0.14 1.88 7.89 -52.49 -0.41 1.46 16 41 H 0.14 2.42 7.34 -52.49 -0.39 2.03 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.11 0.87 6.08 -51.93 -0.32 0.55 16 45 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -34.42 372.28 -8.95 -43.37 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.23 Total: 1.08 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -4.27 Total: -12.77 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 2.35 Total: -45.37 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.49 Total: 20.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.42 -8.95 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.699 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds