Wall clock time and date at job start Wed Apr 1 2020 00:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47227 * 2 1 4 4 C 1.50700 * 109.47207 * 119.99779 * 2 1 3 5 5 H 1.07998 * 120.00152 * 114.35709 * 4 2 1 6 6 C 1.37878 * 119.99799 * 294.36382 * 4 2 1 7 7 N 1.31508 * 120.00166 * 157.10793 * 6 4 2 8 8 Si 1.86801 * 119.99967 * 337.10014 * 6 4 2 9 9 H 1.48505 * 109.47101 * 180.02562 * 8 6 4 10 10 H 1.48499 * 109.47196 * 300.00374 * 8 6 4 11 11 H 1.48504 * 109.47110 * 60.00592 * 8 6 4 12 12 N 1.46500 * 109.47108 * 239.99667 * 2 1 3 13 13 C 1.46498 * 120.00129 * 299.99902 * 12 2 1 14 14 C 1.34775 * 119.99809 * 120.00101 * 12 2 1 15 15 O 1.21290 * 120.00483 * 3.92762 * 14 12 2 16 16 C 1.50696 * 120.00239 * 183.92509 * 14 12 2 17 17 C 1.50710 * 115.54934 * 277.63963 * 16 14 12 18 18 C 1.38317 * 119.88050 * 148.60860 * 17 16 14 19 19 C 1.38027 * 120.11465 * 179.72262 * 18 17 16 20 20 C 1.39302 * 119.87717 * 0.56801 * 19 18 17 21 21 C 1.48464 * 120.11259 * 179.68197 * 20 19 18 22 22 N 1.34056 * 126.67292 * 180.02562 * 21 20 19 23 23 N 1.28988 * 107.26760 * 179.97438 * 22 21 20 24 24 N 1.28729 * 108.94206 * 359.97438 * 23 22 21 25 25 H 0.97002 * 125.33922 * 180.02562 * 24 23 22 26 26 N 1.28872 * 109.32109 * 359.75453 * 24 23 22 27 27 C 1.39290 * 119.77294 * 359.70451 * 20 19 18 28 28 C 1.38035 * 119.87819 * 359.97438 * 27 20 19 29 29 C 1.53002 * 117.50369 * 131.93104 * 16 14 12 30 30 C 1.53000 * 117.50112 * 63.30474 * 16 14 12 31 31 H 1.09001 * 109.47358 * 52.71943 * 1 2 3 32 32 H 1.09001 * 109.47374 * 172.71433 * 1 2 3 33 33 H 1.08994 * 109.47586 * 292.71977 * 1 2 3 34 34 H 0.96999 * 120.00308 * 354.89682 * 7 6 4 35 35 H 1.09003 * 109.46887 * 94.41735 * 13 12 2 36 36 H 1.09000 * 109.46918 * 214.41527 * 13 12 2 37 37 H 1.08994 * 109.47011 * 334.41405 * 13 12 2 38 38 H 1.08000 * 119.93975 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.06069 * 180.27784 * 19 18 17 40 40 H 1.07996 * 120.06335 * 179.97438 * 27 20 19 41 41 H 1.08000 * 119.93977 * 179.97438 * 28 27 20 42 42 H 1.08998 * 117.49486 * 359.97438 * 29 16 14 43 43 H 1.08999 * 117.50286 * 145.02078 * 29 16 14 44 44 H 1.09002 * 117.50199 * 214.98196 * 30 16 14 45 45 H 1.09001 * 117.49632 * 0.02562 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5760 -1.6385 1.1341 6 6 1.7977 -0.1754 2.4794 7 7 1.8122 -0.9518 3.5407 8 14 1.4594 1.6525 2.6640 9 1 1.2416 1.9733 4.0975 10 1 2.6213 2.4248 2.1553 11 1 0.2468 2.0125 1.8860 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1451 1.1027 -1.8569 16 6 3.2224 -0.7178 -3.3566 17 6 4.4200 -1.6248 -3.2363 18 6 4.5247 -2.7392 -4.0489 19 6 5.6222 -3.5701 -3.9467 20 6 6.6194 -3.2911 -3.0150 21 6 7.7986 -4.1852 -2.8958 22 7 8.8289 -4.0431 -2.0500 23 7 9.6378 -5.0249 -2.2635 24 7 9.1570 -5.7665 -3.1995 25 1 9.5734 -6.5702 -3.5482 26 7 8.0331 -5.2767 -3.5966 27 6 6.5062 -2.1707 -2.1953 28 6 5.4078 -1.3427 -2.3103 29 6 3.0505 0.0561 -4.6653 30 6 2.1272 -1.1214 -4.3458 31 1 -0.3634 0.6225 -0.8177 32 1 -0.3634 -1.0194 -0.1303 33 1 -0.3634 0.3969 0.9478 34 1 1.9142 -1.9110 3.4386 35 1 0.7815 -2.1447 -2.0651 36 1 2.4955 -2.6016 -1.9168 37 1 1.4530 -2.5769 -0.4743 38 1 3.7484 -2.9574 -4.7673 39 1 5.7052 -4.4375 -4.5848 40 1 7.2764 -1.9502 -1.4710 41 1 5.3188 -0.4739 -1.6749 42 1 2.6265 1.0584 -4.6052 43 1 3.8037 -0.0906 -5.4395 44 1 2.2729 -2.0427 -4.9098 45 1 1.0961 -0.8931 -4.0757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:11 Heat of formation + Delta-G solvation = 124.775743 kcal Electronic energy + Delta-G solvation = -29438.457361 eV Core-core repulsion = 25459.248450 eV Total energy + Delta-G solvation = -3979.208911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.50218 -41.69726 -40.01696 -37.79423 -37.09780 -35.40914 -34.78215 -34.51381 -32.16662 -31.91042 -31.37426 -27.74075 -26.89018 -26.44958 -25.83321 -24.84647 -23.78033 -22.99451 -22.76090 -21.58971 -20.22233 -19.73704 -19.55236 -18.39776 -18.18078 -17.77388 -17.22052 -16.60626 -16.08661 -15.84115 -15.65900 -15.49440 -15.15835 -14.88606 -14.70032 -14.43972 -14.18059 -14.11458 -13.95519 -13.65696 -13.46978 -13.36568 -13.20444 -13.01789 -12.84355 -12.50180 -12.48987 -12.43766 -12.30502 -12.19746 -11.98191 -11.93526 -11.72715 -11.57898 -11.36667 -11.23940 -10.60346 -10.46507 -10.01303 -9.52304 -9.47354 -8.72199 -6.37744 -0.39536 0.12217 0.34968 1.21431 1.39554 1.40700 1.48958 1.65481 1.68141 2.21714 2.41767 2.55812 2.61531 2.97080 2.98292 3.12059 3.43433 3.56391 3.81234 3.94180 4.01371 4.08232 4.14435 4.33345 4.37768 4.39582 4.49110 4.52819 4.60465 4.66842 4.71869 4.73405 4.80594 4.89090 4.94903 4.96125 5.04530 5.12818 5.22635 5.31459 5.36940 5.37706 5.53012 5.59712 5.71080 5.82069 5.82926 6.03747 6.55716 6.71675 7.07444 7.25532 7.39028 8.58057 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.003264 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.419276 B = 8575.929529 C =10026.792488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.027 0.973 4 C -0.611 4.611 5 H 0.030 0.970 6 C 0.000 4.000 7 N -0.923 5.923 8 Si 1.064 2.936 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.243 1.243 12 N -0.587 5.587 13 C 0.089 3.911 14 C 0.537 3.463 15 O -0.597 6.597 16 C -0.145 4.145 17 C -0.013 4.013 18 C -0.105 4.105 19 C -0.063 4.063 20 C -0.035 4.035 21 C 0.212 3.788 22 N -0.303 5.303 23 N -0.058 5.058 24 N -0.197 5.197 25 H 0.495 0.505 26 N -0.285 5.285 27 C -0.078 4.078 28 C -0.131 4.131 29 C -0.130 4.130 30 C -0.128 4.128 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.258 0.742 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -11.253 -23.827 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.131 3.869 3 H 0.045 0.955 4 C -0.649 4.649 5 H 0.048 0.952 6 C -0.202 4.202 7 N -0.557 5.557 8 Si 0.887 3.113 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.167 1.167 12 N -0.316 5.316 13 C -0.053 4.053 14 C 0.325 3.675 15 O -0.479 6.479 16 C -0.148 4.148 17 C -0.015 4.015 18 C -0.122 4.122 19 C -0.083 4.083 20 C -0.038 4.038 21 C -0.067 4.067 22 N -0.175 5.175 23 N -0.053 5.053 24 N -0.049 5.049 25 H 0.355 0.645 26 N -0.138 5.138 27 C -0.098 4.098 28 C -0.149 4.149 29 C -0.167 4.167 30 C -0.164 4.164 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.193 0.807 39 H 0.181 0.819 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.147 0.853 44 H 0.165 0.835 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.288 -9.740 -22.286 25.121 hybrid contribution 0.734 -1.393 -0.171 1.584 sum 7.022 -11.133 -22.457 26.030 Atomic orbital electron populations 1.22247 0.96140 1.01453 1.00517 1.18931 0.92093 0.93120 0.82790 0.95476 1.22219 1.40153 1.09857 0.92646 0.95155 1.26720 0.93044 1.08548 0.91865 1.70953 1.46332 1.05859 1.32591 0.83787 0.78699 0.72106 0.76705 1.20570 1.21132 1.16709 1.47935 1.48904 1.13050 1.21670 1.21743 1.01301 0.80548 1.01717 1.20065 0.77402 0.85432 0.84568 1.90615 1.57505 1.21206 1.78610 1.20025 0.99667 1.04908 0.90198 1.18945 0.92208 0.94694 0.95627 1.21237 0.98926 0.92319 0.99765 1.21371 0.91344 0.99707 0.95858 1.17328 0.91828 0.94047 1.00591 1.23757 0.96615 0.93563 0.92812 1.76130 1.02619 1.16516 1.22275 1.78871 1.20875 0.99654 1.05936 1.47795 1.11853 1.22700 1.22533 0.64513 1.74849 1.03262 1.11495 1.24212 1.21035 0.97522 0.93303 0.97971 1.20875 0.94852 0.99734 0.99456 1.23189 1.02792 0.97195 0.93516 1.23459 0.94632 1.00764 0.97554 0.93221 0.92153 0.93022 0.93317 0.90076 0.90685 0.92705 0.80693 0.81918 0.85787 0.88798 0.89184 0.85280 0.83475 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 9.02 71.98 0.65 -5.43 16 2 C 0.23 11.43 2.22 44.24 0.10 11.52 16 3 H 0.03 1.48 5.48 -2.39 -0.01 1.47 16 4 C -0.61 -34.79 8.27 25.60 0.21 -34.58 16 5 H 0.03 1.88 7.45 -2.91 -0.02 1.86 16 6 C 0.00 -0.03 5.19 84.66 0.44 0.41 16 7 N -0.92 -57.31 13.69 21.45 0.29 -57.01 16 8 Si 1.06 52.25 26.43 68.60 1.81 54.07 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.24 -10.56 6.14 99.48 0.61 -9.95 16 12 N -0.59 -24.15 2.75 -826.81 -2.28 -26.43 16 13 C 0.09 2.89 8.26 127.77 1.06 3.95 16 14 C 0.54 21.46 5.69 87.66 0.50 21.96 16 15 O -0.60 -29.43 16.34 -3.06 -0.05 -29.48 16 16 C -0.14 -3.94 1.28 -53.67 -0.07 -4.01 16 17 C -0.01 -0.35 4.37 -19.82 -0.09 -0.44 16 18 C -0.11 -1.84 9.36 22.24 0.21 -1.63 16 19 C -0.06 -1.15 9.70 22.48 0.22 -0.93 16 20 C -0.03 -0.85 5.88 -20.04 -0.12 -0.97 16 21 C 0.21 5.17 7.94 137.38 1.09 6.26 16 22 N -0.30 -8.27 12.23 -52.17 -0.64 -8.91 16 23 N -0.06 -1.25 13.47 37.02 0.50 -0.75 16 24 N -0.20 -2.71 7.90 37.02 0.29 -2.42 16 25 H 0.50 1.37 8.96 -347.54 -3.12 -1.74 16 26 N -0.29 -5.25 12.08 -52.12 -0.63 -5.88 16 27 C -0.08 -2.32 9.70 22.47 0.22 -2.10 16 28 C -0.13 -4.27 9.31 22.24 0.21 -4.06 16 29 C -0.13 -2.68 9.86 30.60 0.30 -2.38 16 30 C -0.13 -2.14 8.60 30.60 0.26 -1.88 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 33 H 0.05 2.25 5.46 -2.39 -0.01 2.24 16 34 H 0.26 16.08 8.73 -92.71 -0.81 15.27 16 35 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 36 H 0.07 2.13 6.24 -2.39 -0.01 2.12 16 37 H 0.05 2.06 6.99 -2.39 -0.02 2.04 16 38 H 0.18 1.57 5.92 -2.91 -0.02 1.56 16 39 H 0.16 2.03 7.88 -2.91 -0.02 2.01 16 40 H 0.12 3.83 7.89 -2.91 -0.02 3.81 16 41 H 0.09 3.78 7.34 -2.91 -0.02 3.76 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.15 1.26 6.08 -2.39 -0.01 1.25 16 45 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -82.05 372.28 2.30 -79.75 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.19 Total: 11.38 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.19 Total: -14.31 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.46 Total: -101.41 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 1.81 Total: 54.07 kcal Total: -82.05 2.30 -79.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.523 kcal (2) G-P(sol) polarization free energy of solvation -82.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds