Wall clock time and date at job start Wed Apr 1 2020 00:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46704 * 2 1 4 4 C 1.50702 * 109.47084 * 240.00343 * 2 1 3 5 5 H 1.07996 * 119.99879 * 274.70484 * 4 2 1 6 6 C 1.37875 * 119.99978 * 94.70104 * 4 2 1 7 7 N 1.31521 * 119.99772 * 183.47053 * 6 4 2 8 8 Si 1.86799 * 120.00330 * 3.47154 * 6 4 2 9 9 H 1.48506 * 109.47053 * 93.16018 * 8 6 4 10 10 H 1.48498 * 109.47432 * 213.16115 * 8 6 4 11 11 H 1.48496 * 109.47063 * 333.16269 * 8 6 4 12 12 C 1.50698 * 109.47281 * 120.00192 * 2 1 3 13 13 O 1.21275 * 119.99773 * 119.99677 * 12 2 1 14 14 N 1.34781 * 119.99823 * 300.00424 * 12 2 1 15 15 C 1.46492 * 119.99600 * 185.07902 * 14 12 2 16 16 C 1.50700 * 112.84812 * 294.07719 * 15 14 12 17 17 C 1.38315 * 119.88561 * 341.02444 * 16 15 14 18 18 C 1.38025 * 120.12105 * 179.97438 * 17 16 15 19 19 C 1.39298 * 119.88023 * 359.97438 * 18 17 16 20 20 C 1.48464 * 120.11708 * 180.02562 * 19 18 17 21 21 N 1.34054 * 126.67026 * 359.97438 * 20 19 18 22 22 N 1.28991 * 107.26593 * 180.02562 * 21 20 19 23 23 N 1.28732 * 108.94290 * 0.02562 * 22 21 20 24 24 H 0.96998 * 125.34313 * 180.02562 * 23 22 21 25 25 N 1.28873 * 109.31781 * 359.97438 * 23 22 21 26 26 C 1.39299 * 119.76677 * 0.27859 * 19 18 17 27 27 C 1.38027 * 119.88129 * 359.44652 * 26 19 18 28 28 C 1.53784 * 113.69513 * 65.34666 * 15 14 12 29 29 C 1.53784 * 87.08066 * 89.12781 * 28 15 14 30 30 C 1.53782 * 87.08259 * 25.43316 * 29 28 15 31 31 H 1.08998 * 109.47498 * 175.37246 * 1 2 3 32 32 H 1.09003 * 109.47209 * 295.37240 * 1 2 3 33 33 H 1.09004 * 109.47411 * 55.37449 * 1 2 3 34 34 H 0.97000 * 119.99773 * 180.02562 * 7 6 4 35 35 H 0.97001 * 119.99806 * 5.07158 * 14 12 2 36 36 H 1.07999 * 119.93501 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.05932 * 179.97438 * 18 17 16 38 38 H 1.08001 * 120.05984 * 179.72407 * 26 19 18 39 39 H 1.08001 * 119.94396 * 180.28099 * 27 26 19 40 40 H 1.08999 * 113.61076 * 203.67307 * 28 15 14 41 41 H 1.08993 * 113.61305 * 334.57962 * 28 15 14 42 42 H 1.08998 * 113.61203 * 270.89194 * 29 28 15 43 43 H 1.09000 * 113.69284 * 139.99307 * 29 28 15 44 44 H 1.08998 * 113.61913 * 220.02370 * 30 29 28 45 45 H 1.09004 * 113.69023 * 89.12504 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1400 -1.7849 -1.2275 6 6 2.3544 0.0116 -2.3601 7 7 2.7275 -0.6131 -3.4557 8 14 2.2609 1.8771 -2.3346 9 1 3.5915 2.4347 -1.9825 10 1 1.8562 2.3709 -3.6753 11 1 1.2607 2.3088 -1.3254 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7067 -0.2500 2.4546 15 6 2.2842 -0.8721 3.6485 16 6 1.8295 -2.2954 3.8447 17 6 0.6901 -2.7493 3.2055 18 6 0.2696 -4.0521 3.3813 19 6 0.9954 -4.9106 4.2040 20 6 0.5482 -6.3131 4.3964 21 7 -0.5288 -6.8925 3.8473 22 7 -0.5625 -8.1122 4.2656 23 7 0.4408 -8.3140 5.0466 24 1 0.6448 -9.1505 5.4933 25 7 1.1322 -7.2305 5.1411 26 6 2.1393 -4.4469 4.8496 27 6 2.5542 -3.1438 4.6624 28 6 3.8067 -0.6901 3.7652 29 6 3.5135 0.6158 4.5226 30 6 2.1628 -0.0067 4.9140 31 1 -0.3634 -1.0243 -0.0829 32 1 -0.3634 0.4404 0.9286 33 1 -0.3634 0.5839 -0.8457 34 1 2.9544 -0.1052 -4.2503 35 1 1.0901 0.4933 2.5449 36 1 0.1284 -2.0830 2.5675 37 1 -0.6205 -4.4054 2.8820 38 1 2.7031 -5.1071 5.4921 39 1 3.4434 -2.7846 5.1589 40 1 4.2916 -1.4505 4.3775 41 1 4.3028 -0.5371 2.8069 42 1 3.4211 1.4860 3.8728 43 1 4.1765 0.7888 5.3703 44 1 1.3319 0.6980 4.8829 45 1 2.1970 -0.5804 5.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:10 Heat of formation + Delta-G solvation = 139.183371 kcal Electronic energy + Delta-G solvation = -29464.840037 eV Core-core repulsion = 25486.255887 eV Total energy + Delta-G solvation = -3978.584149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.55575 -40.70455 -38.52123 -37.51449 -34.48877 -33.65907 -33.60554 -32.70005 -31.15765 -30.85888 -30.40309 -25.92141 -25.75566 -25.23547 -24.79265 -23.59383 -22.71044 -22.11071 -21.14827 -19.59614 -19.28971 -18.74383 -17.24841 -17.21646 -17.00901 -16.25136 -15.90599 -15.32170 -14.78642 -14.73795 -14.36307 -13.95292 -13.90868 -13.55836 -13.37845 -13.15584 -13.10822 -12.63702 -12.49848 -12.33488 -12.19117 -12.07046 -11.89221 -11.47296 -11.39246 -11.36300 -11.12242 -11.02854 -10.91980 -10.76254 -10.74510 -10.58806 -10.35446 -10.21137 -9.78031 -9.13746 -8.84540 -8.69367 -8.56849 -8.55181 -8.28703 -6.04665 -4.03899 0.68231 1.10942 1.51297 2.10017 2.32386 3.24074 3.30534 3.34301 3.60715 3.65155 3.66545 3.83744 4.11371 4.39155 4.54384 4.68197 4.71728 4.91666 5.03477 5.05023 5.17564 5.25181 5.28962 5.35466 5.51354 5.60330 5.64455 5.72245 5.81797 5.90023 5.97463 6.06217 6.13503 6.15793 6.19702 6.24559 6.28935 6.37985 6.43644 6.51233 6.54280 6.66704 6.84030 6.97865 7.12646 7.19460 7.57523 8.03227 8.17235 8.56643 9.11995 9.20661 9.54945 11.08650 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003220 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.375757 B = 8693.782808 C =10214.979823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 H 0.055 0.945 4 C -0.492 4.492 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.870 3.130 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.519 3.481 13 O -0.512 6.512 14 N -0.731 5.731 15 C 0.187 3.813 16 C -0.036 4.036 17 C -0.097 4.097 18 C -0.071 4.071 19 C -0.033 4.033 20 C 0.230 3.770 21 N -0.268 5.268 22 N -0.052 5.052 23 N -0.232 5.232 24 H 0.474 0.526 25 N -0.300 5.300 26 C -0.079 4.079 27 C -0.120 4.120 28 C -0.138 4.138 29 C -0.139 4.139 30 C -0.130 4.130 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.396 0.604 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -4.512 22.838 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.073 0.927 4 C -0.531 4.531 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.697 3.303 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.308 3.692 13 O -0.384 6.384 14 N -0.386 5.386 15 C 0.099 3.901 16 C -0.038 4.038 17 C -0.115 4.115 18 C -0.091 4.091 19 C -0.037 4.037 20 C -0.049 4.049 21 N -0.141 5.141 22 N -0.048 5.048 23 N -0.077 5.077 24 H 0.327 0.673 25 N -0.151 5.151 26 C -0.099 4.099 27 C -0.138 4.138 28 C -0.176 4.176 29 C -0.177 4.177 30 C -0.168 4.168 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.231 0.769 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.218 -5.750 22.402 23.351 hybrid contribution 0.168 1.057 0.109 1.076 sum -3.049 -4.693 22.511 23.196 Atomic orbital electron populations 1.21981 0.96976 1.01341 0.99025 1.19391 0.93941 0.97081 0.92309 0.92684 1.20751 1.42805 0.96242 0.93263 0.89608 1.25034 0.94719 0.97901 0.95441 1.69894 1.45765 1.35584 1.02041 0.86969 0.78785 0.86908 0.77627 1.20349 1.21234 1.18694 1.21749 0.79425 0.84455 0.83618 1.90614 1.36453 1.25125 1.86216 1.46150 1.50096 1.37744 1.04589 1.19952 0.94495 0.88885 0.86745 1.20073 0.93959 0.95295 0.94512 1.20934 0.96630 0.95297 0.98635 1.21134 0.99209 0.92904 0.95829 1.17174 0.97880 0.86075 1.02547 1.23783 0.90743 0.96232 0.94155 1.76118 1.18501 0.98680 1.20798 1.78905 1.08515 1.12276 1.05065 1.47704 1.15683 1.12600 1.31726 0.67250 1.74914 1.22061 0.94248 1.23894 1.20997 0.94750 0.95750 0.98413 1.20836 0.99948 0.93021 0.99983 1.23333 0.95188 0.97271 1.01840 1.22843 0.96760 0.97864 1.00184 1.23236 0.98579 0.98496 0.96482 0.92873 0.95548 0.92785 0.92624 0.76902 0.85281 0.84898 0.85289 0.85295 0.89257 0.90075 0.89909 0.91279 0.90758 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.11 37.16 0.34 -2.24 16 2 C -0.01 -0.12 2.25 -92.92 -0.21 -0.33 16 3 H 0.06 1.20 5.19 -51.93 -0.27 0.94 16 4 C -0.49 -13.90 8.37 -34.44 -0.29 -14.19 16 5 H 0.09 2.78 7.60 -52.49 -0.40 2.38 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.87 20.65 27.13 -169.99 -4.61 16.04 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.26 -5.66 6.50 56.52 0.37 -5.30 16 12 C 0.52 10.71 5.81 -10.98 -0.06 10.65 16 13 O -0.51 -12.63 14.32 5.56 0.08 -12.55 16 14 N -0.73 -11.10 4.17 -47.92 -0.20 -11.30 16 15 C 0.19 2.49 0.92 -132.16 -0.12 2.37 16 16 C -0.04 -0.51 4.52 -104.56 -0.47 -0.98 16 17 C -0.10 -1.47 8.73 -39.63 -0.35 -1.82 16 18 C -0.07 -1.04 9.70 -39.27 -0.38 -1.42 16 19 C -0.03 -0.47 5.88 -104.89 -0.62 -1.08 16 20 C 0.23 3.15 7.94 -156.30 -1.24 1.91 16 21 N -0.27 -3.82 12.23 32.16 0.39 -3.42 16 22 N -0.05 -0.62 13.47 60.35 0.81 0.20 16 23 N -0.23 -2.03 7.90 60.35 0.48 -1.55 16 24 H 0.47 1.66 8.96 -340.36 -3.05 -1.39 16 25 N -0.30 -3.44 12.08 32.17 0.39 -3.05 16 26 C -0.08 -0.99 9.70 -39.26 -0.38 -1.37 16 27 C -0.12 -1.50 8.99 -39.63 -0.36 -1.85 16 28 C -0.14 -1.81 6.81 -25.92 -0.18 -1.99 16 29 C -0.14 -1.41 7.99 -25.92 -0.21 -1.62 16 30 C -0.13 -1.25 7.31 -25.91 -0.19 -1.44 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.39 7.33 -51.93 -0.38 0.01 16 33 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.40 4.96 7.88 -40.82 -0.32 4.64 16 36 H 0.13 2.00 6.97 -52.49 -0.37 1.63 16 37 H 0.13 1.86 7.89 -52.49 -0.41 1.45 16 38 H 0.13 1.37 7.88 -52.49 -0.41 0.96 16 39 H 0.13 1.31 6.20 -52.49 -0.33 0.98 16 40 H 0.09 1.02 5.95 -51.93 -0.31 0.71 16 41 H 0.08 1.34 7.52 -51.93 -0.39 0.95 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.09 0.78 7.97 -51.93 -0.41 0.36 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -35.77 371.69 -9.42 -45.19 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.33 Total: 5.06 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -4.81 Total: -13.47 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 2.65 Total: -45.87 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.61 Total: 16.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.77 -9.42 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.374 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds