Wall clock time and date at job start Wed Apr 1 2020 00:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46704 * 2 1 4 4 C 1.50702 * 109.47084 * 240.00343 * 2 1 3 5 5 H 1.07996 * 119.99879 * 274.70484 * 4 2 1 6 6 C 1.37875 * 119.99978 * 94.70104 * 4 2 1 7 7 N 1.31521 * 119.99772 * 183.47053 * 6 4 2 8 8 Si 1.86799 * 120.00330 * 3.47154 * 6 4 2 9 9 H 1.48506 * 109.47053 * 93.16018 * 8 6 4 10 10 H 1.48498 * 109.47432 * 213.16115 * 8 6 4 11 11 H 1.48496 * 109.47063 * 333.16269 * 8 6 4 12 12 C 1.50698 * 109.47281 * 120.00192 * 2 1 3 13 13 O 1.21275 * 119.99773 * 119.99677 * 12 2 1 14 14 N 1.34781 * 119.99823 * 300.00424 * 12 2 1 15 15 C 1.46492 * 119.99600 * 185.07902 * 14 12 2 16 16 C 1.50700 * 112.84812 * 294.07719 * 15 14 12 17 17 C 1.38315 * 119.88561 * 341.02444 * 16 15 14 18 18 C 1.38025 * 120.12105 * 179.97438 * 17 16 15 19 19 C 1.39298 * 119.88023 * 359.97438 * 18 17 16 20 20 C 1.48464 * 120.11708 * 180.02562 * 19 18 17 21 21 N 1.34054 * 126.67026 * 359.97438 * 20 19 18 22 22 N 1.28991 * 107.26593 * 180.02562 * 21 20 19 23 23 N 1.28732 * 108.94290 * 0.02562 * 22 21 20 24 24 H 0.96998 * 125.34313 * 180.02562 * 23 22 21 25 25 N 1.28873 * 109.31781 * 359.97438 * 23 22 21 26 26 C 1.39299 * 119.76677 * 0.27859 * 19 18 17 27 27 C 1.38027 * 119.88129 * 359.44652 * 26 19 18 28 28 C 1.53784 * 113.69513 * 65.34666 * 15 14 12 29 29 C 1.53784 * 87.08066 * 89.12781 * 28 15 14 30 30 C 1.53782 * 87.08259 * 25.43316 * 29 28 15 31 31 H 1.08998 * 109.47498 * 175.37246 * 1 2 3 32 32 H 1.09003 * 109.47209 * 295.37240 * 1 2 3 33 33 H 1.09004 * 109.47411 * 55.37449 * 1 2 3 34 34 H 0.97000 * 119.99773 * 180.02562 * 7 6 4 35 35 H 0.97001 * 119.99806 * 5.07158 * 14 12 2 36 36 H 1.07999 * 119.93501 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.05932 * 179.97438 * 18 17 16 38 38 H 1.08001 * 120.05984 * 179.72407 * 26 19 18 39 39 H 1.08001 * 119.94396 * 180.28099 * 27 26 19 40 40 H 1.08999 * 113.61076 * 203.67307 * 28 15 14 41 41 H 1.08993 * 113.61305 * 334.57962 * 28 15 14 42 42 H 1.08998 * 113.61203 * 270.89194 * 29 28 15 43 43 H 1.09000 * 113.69284 * 139.99307 * 29 28 15 44 44 H 1.08998 * 113.61913 * 220.02370 * 30 29 28 45 45 H 1.09004 * 113.69023 * 89.12504 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1400 -1.7849 -1.2275 6 6 2.3544 0.0116 -2.3601 7 7 2.7275 -0.6131 -3.4557 8 14 2.2609 1.8771 -2.3346 9 1 3.5915 2.4347 -1.9825 10 1 1.8562 2.3709 -3.6753 11 1 1.2607 2.3088 -1.3254 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1190 14 7 1.7067 -0.2500 2.4546 15 6 2.2842 -0.8721 3.6485 16 6 1.8295 -2.2954 3.8447 17 6 0.6901 -2.7493 3.2055 18 6 0.2696 -4.0521 3.3813 19 6 0.9954 -4.9106 4.2040 20 6 0.5482 -6.3131 4.3964 21 7 -0.5288 -6.8925 3.8473 22 7 -0.5625 -8.1122 4.2656 23 7 0.4408 -8.3140 5.0466 24 1 0.6448 -9.1505 5.4933 25 7 1.1322 -7.2305 5.1411 26 6 2.1393 -4.4469 4.8496 27 6 2.5542 -3.1438 4.6624 28 6 3.8067 -0.6901 3.7652 29 6 3.5135 0.6158 4.5226 30 6 2.1628 -0.0067 4.9140 31 1 -0.3634 -1.0243 -0.0829 32 1 -0.3634 0.4404 0.9286 33 1 -0.3634 0.5839 -0.8457 34 1 2.9544 -0.1052 -4.2503 35 1 1.0901 0.4933 2.5449 36 1 0.1284 -2.0830 2.5675 37 1 -0.6205 -4.4054 2.8820 38 1 2.7031 -5.1071 5.4921 39 1 3.4434 -2.7846 5.1589 40 1 4.2916 -1.4505 4.3775 41 1 4.3028 -0.5371 2.8069 42 1 3.4211 1.4860 3.8728 43 1 4.1765 0.7888 5.3703 44 1 1.3319 0.6980 4.8829 45 1 2.1970 -0.5804 5.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:09 Heat of formation + Delta-G solvation = 113.388691 kcal Electronic energy + Delta-G solvation = -29465.958578 eV Core-core repulsion = 25486.255887 eV Total energy + Delta-G solvation = -3979.702691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.48805 -41.84067 -39.81917 -38.75190 -35.56479 -35.43324 -34.60526 -34.23252 -32.93665 -31.89176 -31.52273 -27.23719 -26.91453 -26.65295 -25.74632 -24.84843 -23.93989 -23.29276 -22.16144 -21.02418 -20.30479 -19.88114 -19.05678 -18.25042 -18.16955 -17.69948 -17.12377 -16.46792 -16.27427 -15.82214 -15.72364 -15.40915 -15.03102 -14.85690 -14.70397 -14.43524 -14.33568 -14.18717 -13.83915 -13.58097 -13.21885 -13.10020 -13.00671 -12.95859 -12.85754 -12.57486 -12.42478 -12.33555 -12.11640 -11.96283 -11.86721 -11.72320 -11.68727 -11.55237 -11.28654 -11.17148 -10.72988 -10.27921 -9.90792 -9.89655 -9.39164 -8.24406 -6.30481 -0.30764 0.15013 0.46075 1.28672 1.36625 1.39269 1.40619 1.50258 2.02606 2.36341 2.38104 2.64217 2.79603 3.12989 3.14394 3.64252 3.72777 3.77673 3.98517 4.03127 4.04499 4.18190 4.27457 4.38027 4.42355 4.46710 4.54095 4.61791 4.77115 4.84231 4.88672 4.89505 4.92197 5.06256 5.12782 5.17108 5.18709 5.20882 5.36880 5.38451 5.44225 5.54876 5.60214 5.60480 5.62979 5.92294 5.93991 6.29608 6.72992 6.94283 7.08460 7.31257 7.67643 8.93893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003220 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.375757 B = 8693.782808 C =10214.979823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.010 4.010 3 H 0.072 0.928 4 C -0.501 4.501 5 H 0.019 0.981 6 C 0.002 3.998 7 N -0.955 5.955 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.218 1.218 12 C 0.524 3.476 13 O -0.564 6.564 14 N -0.707 5.707 15 C 0.170 3.830 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.086 4.086 19 C -0.043 4.043 20 C 0.215 3.785 21 N -0.301 5.301 22 N -0.057 5.057 23 N -0.199 5.199 24 H 0.495 0.505 25 N -0.292 5.292 26 C -0.075 4.075 27 C -0.118 4.118 28 C -0.148 4.148 29 C -0.127 4.127 30 C -0.109 4.109 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.413 0.587 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 -2.189 26.716 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 H 0.089 0.911 4 C -0.539 4.539 5 H 0.038 0.962 6 C -0.194 4.194 7 N -0.596 5.596 8 Si 0.768 3.232 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.140 1.140 12 C 0.312 3.688 13 O -0.440 6.440 14 N -0.362 5.362 15 C 0.083 3.917 16 C -0.050 4.050 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.047 4.047 20 C -0.065 4.065 21 N -0.173 5.173 22 N -0.052 5.052 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.145 5.145 26 C -0.095 4.095 27 C -0.136 4.136 28 C -0.186 4.186 29 C -0.165 4.165 30 C -0.146 4.146 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.582 -3.420 26.355 26.816 hybrid contribution 0.313 0.088 -1.041 1.090 sum -3.269 -3.332 25.314 25.741 Atomic orbital electron populations 1.21855 0.94122 1.00968 1.01756 1.19367 0.96055 0.97047 0.90757 0.91072 1.20895 1.42972 0.93715 0.96309 0.96236 1.26108 0.94142 1.04628 0.94512 1.70099 1.47962 1.38309 1.03190 0.85759 0.80058 0.78558 0.78792 1.19844 1.21221 1.14014 1.21292 0.78841 0.83711 0.84959 1.90600 1.38936 1.27378 1.87129 1.45729 1.49323 1.37436 1.03704 1.20357 0.94746 0.89260 0.87380 1.20271 0.93737 0.96159 0.94783 1.20942 0.97640 0.95501 0.99403 1.21149 0.99589 0.93223 0.96623 1.17330 0.98385 0.86346 1.02611 1.23794 0.91128 0.96569 0.95007 1.76103 1.19485 0.99633 1.22060 1.78840 1.09226 1.11568 1.05607 1.47770 1.14212 1.12891 1.30133 0.64581 1.74862 1.21904 0.94429 1.23307 1.21266 0.94099 0.96136 0.98002 1.21144 1.00298 0.92701 0.99419 1.23436 0.94511 1.00048 1.00589 1.22810 0.97434 0.95907 1.00305 1.23229 0.98867 0.97698 0.94835 0.94576 0.90407 0.92731 0.92599 0.74906 0.86413 0.85549 0.83120 0.82493 0.87637 0.94369 0.90322 0.88760 0.88793 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.11 71.98 0.66 -4.09 16 2 C -0.01 -0.47 2.25 -12.29 -0.03 -0.50 16 3 H 0.07 2.94 5.19 -2.39 -0.01 2.92 16 4 C -0.50 -29.73 8.37 25.60 0.21 -29.52 16 5 H 0.02 1.37 7.60 -2.91 -0.02 1.35 16 6 C 0.00 0.11 5.47 84.65 0.46 0.58 16 7 N -0.96 -61.96 13.96 21.45 0.30 -61.66 16 8 Si 0.95 42.44 27.13 68.60 1.86 44.31 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.22 -8.16 6.50 99.48 0.65 -7.51 16 12 C 0.52 21.89 5.81 87.66 0.51 22.40 16 13 O -0.56 -29.32 14.32 -3.01 -0.04 -29.36 16 14 N -0.71 -20.37 4.17 -423.93 -1.77 -22.13 16 15 C 0.17 4.19 0.92 3.39 0.00 4.19 16 16 C -0.05 -1.30 4.52 -19.83 -0.09 -1.39 16 17 C -0.12 -3.61 8.73 22.24 0.19 -3.42 16 18 C -0.09 -2.62 9.70 22.47 0.22 -2.40 16 19 C -0.04 -1.22 5.88 -20.04 -0.12 -1.33 16 20 C 0.21 5.82 7.94 137.38 1.09 6.91 16 21 N -0.30 -8.67 12.23 -52.18 -0.64 -9.31 16 22 N -0.06 -1.32 13.47 37.02 0.50 -0.82 16 23 N -0.20 -3.18 7.90 37.02 0.29 -2.88 16 24 H 0.49 2.41 8.96 -347.54 -3.12 -0.71 16 25 N -0.29 -6.29 12.08 -52.13 -0.63 -6.92 16 26 C -0.08 -1.78 9.70 22.47 0.22 -1.56 16 27 C -0.12 -2.73 8.99 22.24 0.20 -2.53 16 28 C -0.15 -3.62 6.81 31.12 0.21 -3.41 16 29 C -0.13 -2.09 7.99 31.12 0.25 -1.84 16 30 C -0.11 -1.61 7.31 31.12 0.23 -1.38 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 2.05 7.33 -2.39 -0.02 2.03 16 33 H 0.05 1.99 8.06 -2.38 -0.02 1.97 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.41 8.95 7.88 -92.71 -0.73 8.22 16 36 H 0.12 3.76 6.97 -2.91 -0.02 3.74 16 37 H 0.13 3.86 7.89 -2.91 -0.02 3.83 16 38 H 0.15 2.84 7.88 -2.91 -0.02 2.81 16 39 H 0.16 2.65 6.20 -2.91 -0.02 2.64 16 40 H 0.11 2.17 5.95 -2.39 -0.01 2.15 16 41 H 0.04 1.27 7.52 -2.39 -0.02 1.25 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 45 H 0.11 1.30 7.97 -2.38 -0.02 1.28 16 Total: -1.00 -86.57 371.69 1.25 -85.32 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -2.84 Total: 22.75 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.22 Total: -19.28 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -1.94 Total: -103.73 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.04 Total: -29.36 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.86 Total: 44.31 kcal Total: -86.57 1.25 -85.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.707 kcal (2) G-P(sol) polarization free energy of solvation -86.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds