Wall clock time and date at job start Wed Apr 1 2020 00:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47511 * 2 1 4 4 C 1.50696 * 109.46894 * 120.00268 * 2 1 3 5 5 H 1.08003 * 120.00047 * 119.99923 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99451 * 4 2 1 7 7 N 1.31517 * 120.00047 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99999 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46981 * 89.99694 * 8 6 4 10 10 H 1.48496 * 109.47303 * 209.99861 * 8 6 4 11 11 H 1.48493 * 109.46941 * 330.00012 * 8 6 4 12 12 C 1.50700 * 109.46862 * 239.99956 * 2 1 3 13 13 O 1.21286 * 119.99851 * 240.00493 * 12 2 1 14 14 N 1.34773 * 119.99878 * 60.00454 * 12 2 1 15 15 C 1.46503 * 119.99734 * 185.00346 * 14 12 2 16 16 C 1.50700 * 112.85149 * 294.28858 * 15 14 12 17 17 C 1.38314 * 119.88111 * 164.07282 * 16 15 14 18 18 C 1.38036 * 120.11476 * 179.97438 * 17 16 15 19 19 C 1.39292 * 119.88214 * 0.02562 * 18 17 16 20 20 C 1.48464 * 120.11944 * 179.97438 * 19 18 17 21 21 N 1.34047 * 126.66804 * 359.97438 * 20 19 18 22 22 N 1.28988 * 107.26675 * 180.02562 * 21 20 19 23 23 N 1.28734 * 108.94219 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.34054 * 179.97438 * 23 22 21 25 25 N 1.28872 * 109.31747 * 0.02562 * 23 22 21 26 26 C 1.39308 * 119.76848 * 0.27203 * 19 18 17 27 27 C 1.38030 * 119.87367 * 359.45097 * 26 19 18 28 28 C 1.53787 * 113.61611 * 65.48601 * 15 14 12 29 29 C 1.53953 * 87.01889 * 89.22611 * 28 15 14 30 30 C 1.53774 * 87.11255 * 25.36451 * 29 28 15 31 31 H 1.09007 * 109.47351 * 300.00415 * 1 2 3 32 32 H 1.09002 * 109.47121 * 59.99356 * 1 2 3 33 33 H 1.08992 * 109.47511 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99527 * 180.02562 * 7 6 4 35 35 H 0.96993 * 120.00391 * 5.00239 * 14 12 2 36 36 H 1.08004 * 119.94601 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.05435 * 179.97438 * 18 17 16 38 38 H 1.07990 * 120.06210 * 179.72433 * 26 19 18 39 39 H 1.08005 * 119.94240 * 180.27737 * 27 26 19 40 40 H 1.08992 * 113.61716 * 203.75137 * 28 15 14 41 41 H 1.09005 * 113.60940 * 334.65190 * 28 15 14 42 42 H 1.09001 * 113.54406 * 270.81175 * 29 28 15 43 43 H 1.08998 * 113.74132 * 139.94449 * 29 28 15 44 44 H 1.09003 * 113.61727 * 220.08667 * 30 29 28 45 45 H 1.09002 * 113.69241 * 89.19459 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8597 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4921 12 6 2.0323 -0.7104 -1.2305 13 8 2.7294 -1.6966 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1021 -1.0009 -3.6487 16 6 3.5959 -1.0492 -3.8417 17 6 4.1491 -1.9734 -4.7094 18 6 5.5167 -2.0216 -4.8902 19 6 6.3400 -1.1376 -4.1965 20 6 7.8116 -1.1852 -4.3866 21 7 8.4888 -2.0199 -5.1875 22 7 9.7412 -1.7368 -5.0645 23 7 9.8702 -0.7677 -4.2270 24 1 10.7116 -0.3663 -3.9586 25 7 8.7064 -0.4150 -3.8004 26 6 5.7781 -0.2129 -3.3191 27 6 4.4089 -0.1695 -3.1501 28 6 1.4210 -2.3747 -3.7661 29 6 0.2903 -1.6595 -4.5276 30 6 1.3301 -0.5950 -4.9153 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.9025 -0.5285 4.4375 35 1 1.2106 0.5787 -2.5449 36 1 3.5098 -2.6581 -5.2470 37 1 5.9476 -2.7439 -5.5676 38 1 6.4123 0.4716 -2.7755 39 1 3.9718 0.5500 -2.4735 40 1 1.9764 -3.0866 -4.3766 41 1 1.1086 -2.7904 -2.8080 42 1 -0.5003 -1.2818 -3.8792 43 1 -0.0930 -2.2251 -5.3769 44 1 0.9445 0.4241 -4.8838 45 1 1.8613 -0.8181 -5.8406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589788180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:12 Heat of formation + Delta-G solvation = 145.667638 kcal Electronic energy + Delta-G solvation = -29433.199468 eV Core-core repulsion = 25454.896498 eV Total energy + Delta-G solvation = -3978.302971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.55541 -40.73696 -38.55613 -37.56128 -34.49144 -33.81749 -33.61929 -32.76600 -31.20722 -30.77515 -30.45003 -25.95258 -25.74459 -25.13432 -24.80987 -23.69814 -22.84445 -22.11193 -21.25184 -19.62531 -19.31039 -18.81408 -17.28520 -17.24588 -16.69672 -16.19429 -15.89327 -15.38460 -14.94999 -14.79712 -14.34454 -14.13315 -14.05060 -13.63704 -13.35321 -13.24039 -13.04132 -12.65637 -12.57475 -12.37068 -12.30398 -12.10107 -12.00433 -11.61053 -11.47294 -11.34232 -11.04485 -11.02882 -10.90356 -10.78221 -10.62196 -10.55734 -10.40097 -10.24509 -9.64351 -9.10188 -8.85064 -8.73546 -8.63519 -8.56283 -8.32367 -6.05042 -4.05232 0.69115 1.09828 1.51011 2.11229 2.31840 3.22403 3.29354 3.35743 3.54752 3.61504 3.62909 3.82735 4.11139 4.37240 4.52329 4.66832 4.69895 4.90959 5.01773 5.07664 5.17423 5.24077 5.25249 5.36181 5.50567 5.59626 5.64732 5.70742 5.80065 5.83864 5.91110 6.04459 6.10344 6.12575 6.20126 6.22439 6.26396 6.31408 6.41850 6.44861 6.50505 6.64481 6.71047 6.97058 7.07729 7.14921 7.54420 8.02831 8.11374 8.55324 9.10127 9.17134 9.54056 11.07928 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.003305 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.427386 B = 8469.087700 C =10339.401105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 H 0.050 0.950 4 C -0.504 4.504 5 H 0.094 0.906 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.528 3.472 13 O -0.513 6.513 14 N -0.729 5.729 15 C 0.188 3.812 16 C -0.038 4.038 17 C -0.119 4.119 18 C -0.075 4.075 19 C -0.033 4.033 20 C 0.229 3.771 21 N -0.271 5.271 22 N -0.054 5.054 23 N -0.230 5.230 24 H 0.474 0.526 25 N -0.295 5.295 26 C -0.074 4.074 27 C -0.096 4.096 28 C -0.137 4.137 29 C -0.139 4.139 30 C -0.130 4.130 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.397 0.603 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 3.602 -20.747 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 H 0.067 0.933 4 C -0.542 4.542 5 H 0.112 0.888 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.385 6.385 14 N -0.384 5.384 15 C 0.100 3.900 16 C -0.040 4.040 17 C -0.137 4.137 18 C -0.095 4.095 19 C -0.036 4.036 20 C -0.050 4.050 21 N -0.145 5.145 22 N -0.049 5.049 23 N -0.076 5.076 24 H 0.328 0.672 25 N -0.146 5.146 26 C -0.094 4.094 27 C -0.115 4.115 28 C -0.175 4.175 29 C -0.176 4.176 30 C -0.168 4.168 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.936 2.612 -20.679 21.672 hybrid contribution -0.593 1.673 0.803 1.948 sum 5.343 4.285 -19.876 21.023 Atomic orbital electron populations 1.22106 0.97377 1.01453 0.99178 1.19302 0.93147 0.97472 0.92632 0.93270 1.20936 1.32021 1.14079 0.87184 0.88850 1.24983 0.95835 0.96515 0.95804 1.69887 1.45483 1.40154 0.97860 0.86927 0.80730 0.83892 0.77046 1.20584 1.22387 1.19278 1.21256 0.78827 0.84729 0.83588 1.90623 1.35614 1.26098 1.86192 1.46030 1.60493 1.27263 1.04590 1.19957 0.89066 0.94381 0.86602 1.20063 0.95153 0.94281 0.94507 1.20826 0.94314 0.98928 0.99666 1.21020 0.92975 0.97278 0.98256 1.17177 0.84199 1.00460 1.01800 1.23779 0.96236 0.91307 0.93712 1.76061 0.96081 1.21997 1.20318 1.78870 1.14000 1.03727 1.08344 1.47716 1.09224 1.23046 1.27596 0.67166 1.74979 0.91251 1.25024 1.23375 1.21116 0.95244 0.97107 0.95928 1.20919 0.92529 0.99388 0.98616 1.23354 0.96654 0.95670 1.01803 1.22873 0.96857 0.97712 1.00181 1.23240 0.97214 0.99901 0.96447 0.93383 0.94839 0.92429 0.92603 0.76840 0.85234 0.84921 0.85210 0.85418 0.89225 0.90089 0.89892 0.91241 0.90763 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.57 37.16 0.32 -2.51 16 2 C 0.00 -0.09 2.23 -92.93 -0.21 -0.29 16 3 H 0.05 1.07 7.20 -51.93 -0.37 0.70 16 4 C -0.50 -14.26 8.96 -34.44 -0.31 -14.57 16 5 H 0.09 3.03 7.00 -52.48 -0.37 2.67 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 8 Si 0.88 21.03 24.37 -169.99 -4.14 16.89 16 9 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 10 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.27 -5.87 6.53 56.52 0.37 -5.51 16 12 C 0.53 10.70 5.63 -10.99 -0.06 10.64 16 13 O -0.51 -12.41 13.90 5.55 0.08 -12.34 16 14 N -0.73 -10.81 4.15 -47.92 -0.20 -11.01 16 15 C 0.19 2.45 0.92 -132.15 -0.12 2.33 16 16 C -0.04 -0.53 4.58 -104.57 -0.48 -1.01 16 17 C -0.12 -1.48 8.83 -39.63 -0.35 -1.83 16 18 C -0.08 -0.96 9.70 -39.26 -0.38 -1.34 16 19 C -0.03 -0.46 5.88 -104.89 -0.62 -1.08 16 20 C 0.23 3.14 7.94 -156.31 -1.24 1.90 16 21 N -0.27 -3.68 12.23 32.15 0.39 -3.29 16 22 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 23 N -0.23 -2.09 7.90 60.35 0.48 -1.62 16 24 H 0.47 1.91 8.96 -340.36 -3.05 -1.14 16 25 N -0.29 -3.60 12.08 32.17 0.39 -3.21 16 26 C -0.07 -1.07 9.70 -39.26 -0.38 -1.45 16 27 C -0.10 -1.46 8.60 -39.63 -0.34 -1.80 16 28 C -0.14 -1.75 6.83 -25.83 -0.18 -1.92 16 29 C -0.14 -1.36 8.00 -25.83 -0.21 -1.57 16 30 C -0.13 -1.22 7.30 -25.92 -0.19 -1.41 16 31 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 32 H 0.03 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.40 4.83 8.24 -40.82 -0.34 4.50 16 36 H 0.13 1.29 6.37 -52.48 -0.33 0.95 16 37 H 0.13 1.49 7.89 -52.49 -0.41 1.07 16 38 H 0.13 1.76 7.88 -52.49 -0.41 1.35 16 39 H 0.13 2.01 6.77 -52.48 -0.36 1.65 16 40 H 0.09 1.01 6.08 -51.93 -0.32 0.70 16 41 H 0.08 1.30 7.52 -51.93 -0.39 0.91 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.09 0.77 7.87 -51.93 -0.41 0.36 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -35.61 365.24 -8.95 -44.56 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -8.20 Total: 5.08 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -4.84 Total: -14.01 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 2.65 Total: -45.68 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.61 -8.95 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.227 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds