Wall clock time and date at job start Wed Apr 1 2020 00:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47511 * 2 1 4 4 C 1.50696 * 109.46894 * 120.00268 * 2 1 3 5 5 H 1.08003 * 120.00047 * 119.99923 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99451 * 4 2 1 7 7 N 1.31517 * 120.00047 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99999 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46981 * 89.99694 * 8 6 4 10 10 H 1.48496 * 109.47303 * 209.99861 * 8 6 4 11 11 H 1.48493 * 109.46941 * 330.00012 * 8 6 4 12 12 C 1.50700 * 109.46862 * 239.99956 * 2 1 3 13 13 O 1.21286 * 119.99851 * 240.00493 * 12 2 1 14 14 N 1.34773 * 119.99878 * 60.00454 * 12 2 1 15 15 C 1.46503 * 119.99734 * 185.00346 * 14 12 2 16 16 C 1.50700 * 112.85149 * 294.28858 * 15 14 12 17 17 C 1.38314 * 119.88111 * 164.07282 * 16 15 14 18 18 C 1.38036 * 120.11476 * 179.97438 * 17 16 15 19 19 C 1.39292 * 119.88214 * 0.02562 * 18 17 16 20 20 C 1.48464 * 120.11944 * 179.97438 * 19 18 17 21 21 N 1.34047 * 126.66804 * 359.97438 * 20 19 18 22 22 N 1.28988 * 107.26675 * 180.02562 * 21 20 19 23 23 N 1.28734 * 108.94219 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.34054 * 179.97438 * 23 22 21 25 25 N 1.28872 * 109.31747 * 0.02562 * 23 22 21 26 26 C 1.39308 * 119.76848 * 0.27203 * 19 18 17 27 27 C 1.38030 * 119.87367 * 359.45097 * 26 19 18 28 28 C 1.53787 * 113.61611 * 65.48601 * 15 14 12 29 29 C 1.53953 * 87.01889 * 89.22611 * 28 15 14 30 30 C 1.53774 * 87.11255 * 25.36451 * 29 28 15 31 31 H 1.09007 * 109.47351 * 300.00415 * 1 2 3 32 32 H 1.09002 * 109.47121 * 59.99356 * 1 2 3 33 33 H 1.08992 * 109.47511 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99527 * 180.02562 * 7 6 4 35 35 H 0.96993 * 120.00391 * 5.00239 * 14 12 2 36 36 H 1.08004 * 119.94601 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.05435 * 179.97438 * 18 17 16 38 38 H 1.07990 * 120.06210 * 179.72433 * 26 19 18 39 39 H 1.08005 * 119.94240 * 180.27737 * 27 26 19 40 40 H 1.08992 * 113.61716 * 203.75137 * 28 15 14 41 41 H 1.09005 * 113.60940 * 334.65190 * 28 15 14 42 42 H 1.09001 * 113.54406 * 270.81175 * 29 28 15 43 43 H 1.08998 * 113.74132 * 139.94449 * 29 28 15 44 44 H 1.09003 * 113.61727 * 220.08667 * 30 29 28 45 45 H 1.09002 * 113.69241 * 89.19459 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1371 -0.8597 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4921 12 6 2.0323 -0.7104 -1.2305 13 8 2.7294 -1.6966 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1021 -1.0009 -3.6487 16 6 3.5959 -1.0492 -3.8417 17 6 4.1491 -1.9734 -4.7094 18 6 5.5167 -2.0216 -4.8902 19 6 6.3400 -1.1376 -4.1965 20 6 7.8116 -1.1852 -4.3866 21 7 8.4888 -2.0199 -5.1875 22 7 9.7412 -1.7368 -5.0645 23 7 9.8702 -0.7677 -4.2270 24 1 10.7116 -0.3663 -3.9586 25 7 8.7064 -0.4150 -3.8004 26 6 5.7781 -0.2129 -3.3191 27 6 4.4089 -0.1695 -3.1501 28 6 1.4210 -2.3747 -3.7661 29 6 0.2903 -1.6595 -4.5276 30 6 1.3301 -0.5950 -4.9153 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.9025 -0.5285 4.4375 35 1 1.2106 0.5787 -2.5449 36 1 3.5098 -2.6581 -5.2470 37 1 5.9476 -2.7439 -5.5676 38 1 6.4123 0.4716 -2.7755 39 1 3.9718 0.5500 -2.4735 40 1 1.9764 -3.0866 -4.3766 41 1 1.1086 -2.7904 -2.8080 42 1 -0.5003 -1.2818 -3.8792 43 1 -0.0930 -2.2251 -5.3769 44 1 0.9445 0.4241 -4.8838 45 1 1.8613 -0.8181 -5.8406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589788180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:11 Heat of formation + Delta-G solvation = 119.447449 kcal Electronic energy + Delta-G solvation = -29434.336461 eV Core-core repulsion = 25454.896498 eV Total energy + Delta-G solvation = -3979.439963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.49131 -41.86252 -39.85171 -38.76413 -35.72812 -35.43167 -34.59114 -34.24775 -32.99929 -31.83873 -31.56414 -27.14152 -26.92991 -26.62670 -25.75130 -25.05317 -24.03912 -23.25942 -22.24072 -21.10717 -20.21672 -19.95855 -18.77040 -18.23999 -18.17364 -17.70425 -17.06166 -16.63150 -16.46811 -15.98353 -15.59404 -15.43672 -15.12309 -14.99446 -14.70781 -14.42966 -14.32166 -14.11884 -14.00601 -13.58800 -13.42023 -13.23005 -13.08909 -12.93918 -12.74887 -12.49598 -12.41867 -12.32771 -12.13513 -11.97234 -11.86837 -11.70363 -11.54336 -11.45201 -11.28650 -11.17653 -10.75250 -10.32010 -9.93292 -9.89758 -9.40112 -8.24980 -6.32070 -0.30943 0.14832 0.45526 1.28334 1.33723 1.39508 1.40182 1.51297 1.97629 2.33992 2.36594 2.64578 2.78911 3.09152 3.13225 3.63919 3.72581 3.77803 3.98977 4.01055 4.03996 4.18128 4.22720 4.38215 4.40127 4.46227 4.52293 4.61653 4.65310 4.81608 4.84914 4.89232 4.92885 5.04761 5.06434 5.13988 5.18814 5.21452 5.36587 5.38082 5.44213 5.48607 5.56650 5.57169 5.60644 5.90450 5.93341 6.29677 6.74350 6.92644 7.07871 7.29817 7.63804 8.92863 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.003305 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.427386 B = 8469.087700 C =10339.401105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.065 0.935 4 C -0.515 4.515 5 H 0.028 0.972 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.303 1.303 11 H -0.229 1.229 12 C 0.532 3.468 13 O -0.564 6.564 14 N -0.705 5.705 15 C 0.171 3.829 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.075 4.075 19 C -0.043 4.043 20 C 0.215 3.785 21 N -0.290 5.290 22 N -0.054 5.054 23 N -0.201 5.201 24 H 0.494 0.506 25 N -0.303 5.303 26 C -0.086 4.086 27 C -0.117 4.117 28 C -0.146 4.146 29 C -0.126 4.126 30 C -0.109 4.109 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.414 0.586 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 5.738 -23.974 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.083 0.917 4 C -0.554 4.554 5 H 0.047 0.953 6 C -0.192 4.192 7 N -0.596 5.596 8 Si 0.784 3.216 9 H -0.188 1.188 10 H -0.231 1.231 11 H -0.152 1.152 12 C 0.320 3.680 13 O -0.441 6.441 14 N -0.359 5.359 15 C 0.084 3.916 16 C -0.050 4.050 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.046 4.046 20 C -0.065 4.065 21 N -0.163 5.163 22 N -0.049 5.049 23 N -0.052 5.052 24 H 0.353 0.647 25 N -0.156 5.156 26 C -0.106 4.106 27 C -0.136 4.136 28 C -0.184 4.184 29 C -0.163 4.163 30 C -0.147 4.147 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.132 4.784 -23.981 24.800 hybrid contribution 0.157 0.900 1.804 2.022 sum 4.289 5.684 -22.177 23.292 Atomic orbital electron populations 1.21996 0.94570 1.01469 1.01463 1.19252 0.95303 0.97368 0.91171 0.91691 1.21106 1.31243 1.12636 0.90375 0.95337 1.26037 0.97551 1.00689 0.94904 1.70093 1.47892 1.42886 0.98691 0.85716 0.78753 0.79163 0.77950 1.18783 1.23098 1.15185 1.20860 0.78363 0.83916 0.84845 1.90610 1.38027 1.28363 1.87059 1.45638 1.59125 1.27529 1.03618 1.20364 0.88988 0.94991 0.87296 1.20274 0.95728 0.94339 0.94674 1.21118 0.94533 0.98542 0.99173 1.21268 0.93160 0.97016 0.98010 1.17324 0.84785 1.00623 1.01895 1.23794 0.96379 0.91920 0.94363 1.76035 0.96659 1.22591 1.20967 1.78802 1.13331 1.04133 1.08664 1.47759 1.09463 1.21898 1.26097 0.64701 1.74941 0.91952 1.25136 1.23531 1.21147 0.95197 0.97723 0.96523 1.20929 0.93085 1.00232 0.99330 1.23449 0.98592 0.95805 1.00589 1.22838 0.95922 0.97294 1.00283 1.23236 0.95774 1.00918 0.94751 0.93931 0.89429 0.93749 0.92577 0.74823 0.82397 0.83363 0.85352 0.86731 0.87830 0.94273 0.90108 0.88819 0.88749 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.57 71.98 0.62 -4.45 16 2 C -0.01 -0.41 2.23 -12.29 -0.03 -0.44 16 3 H 0.07 2.69 7.20 -2.39 -0.02 2.67 16 4 C -0.52 -30.57 8.96 25.60 0.23 -30.34 16 5 H 0.03 2.01 7.00 -2.91 -0.02 1.99 16 6 C 0.00 0.24 5.45 84.65 0.46 0.70 16 7 N -0.96 -61.75 13.96 21.45 0.30 -61.45 16 8 Si 0.96 43.01 24.37 68.60 1.67 44.68 16 9 H -0.26 -11.01 6.87 99.48 0.68 -10.32 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.23 -8.77 6.53 99.48 0.65 -8.12 16 12 C 0.53 21.84 5.63 87.66 0.49 22.33 16 13 O -0.56 -28.86 13.90 -3.05 -0.04 -28.90 16 14 N -0.70 -19.77 4.15 -423.90 -1.76 -21.53 16 15 C 0.17 4.13 0.92 3.39 0.00 4.13 16 16 C -0.05 -1.31 4.58 -19.83 -0.09 -1.40 16 17 C -0.12 -2.69 8.83 22.24 0.20 -2.50 16 18 C -0.07 -1.83 9.70 22.48 0.22 -1.61 16 19 C -0.04 -1.20 5.88 -20.04 -0.12 -1.32 16 20 C 0.21 5.85 7.94 137.38 1.09 6.94 16 21 N -0.29 -7.69 12.23 -52.18 -0.64 -8.33 16 22 N -0.05 -1.19 13.47 37.02 0.50 -0.69 16 23 N -0.20 -3.45 7.90 37.02 0.29 -3.16 16 24 H 0.49 3.26 8.96 -347.53 -3.12 0.15 16 25 N -0.30 -7.29 12.08 -52.13 -0.63 -7.92 16 26 C -0.09 -2.56 9.70 22.48 0.22 -2.34 16 27 C -0.12 -3.63 8.60 22.24 0.19 -3.44 16 28 C -0.15 -3.52 6.83 31.18 0.21 -3.30 16 29 C -0.13 -1.99 8.00 31.18 0.25 -1.74 16 30 C -0.11 -1.57 7.30 31.12 0.23 -1.34 16 31 H 0.04 1.62 3.27 -2.38 -0.01 1.61 16 32 H 0.09 2.27 7.68 -2.39 -0.02 2.25 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.41 8.65 8.24 -92.71 -0.76 7.88 16 36 H 0.16 2.67 6.37 -2.91 -0.02 2.65 16 37 H 0.15 3.12 7.89 -2.91 -0.02 3.09 16 38 H 0.13 3.69 7.88 -2.92 -0.02 3.66 16 39 H 0.11 3.71 6.77 -2.91 -0.02 3.69 16 40 H 0.10 2.13 6.08 -2.39 -0.01 2.12 16 41 H 0.04 1.27 7.52 -2.38 -0.02 1.25 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 45 H 0.11 1.27 7.87 -2.39 -0.02 1.25 16 Total: -1.00 -85.40 365.24 0.98 -84.42 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -2.89 Total: 22.99 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 4.17 Total: -20.12 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -1.94 Total: -103.07 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.04 Total: -28.90 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.68 kcal Total: -85.40 0.98 -84.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589788180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.871 kcal (2) G-P(sol) polarization free energy of solvation -85.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds