Wall clock time and date at job start Wed Apr 1 2020 00:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47115 * 2 1 4 4 C 1.53007 * 109.46904 * 240.00596 * 2 1 3 5 5 C 1.50697 * 109.47154 * 64.99984 * 4 2 1 6 6 C 1.38316 * 119.88028 * 269.72332 * 5 4 2 7 7 C 1.38031 * 120.11479 * 179.76787 * 6 5 4 8 8 C 1.39300 * 119.88374 * 0.52874 * 7 6 5 9 9 C 1.48460 * 120.11900 * 179.74745 * 8 7 6 10 10 N 1.34050 * 126.67403 * 180.02562 * 9 8 7 11 11 N 1.28984 * 107.26853 * 179.97438 * 10 9 8 12 12 N 1.28735 * 108.94437 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.34341 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31402 * 359.74892 * 12 11 10 15 15 C 1.39304 * 119.76565 * 359.72526 * 8 7 6 16 16 C 1.38027 * 119.87889 * 359.97438 * 15 8 7 17 17 C 1.50694 * 109.47219 * 120.00455 * 2 1 3 18 18 O 1.21284 * 120.00100 * 120.00104 * 17 2 1 19 19 N 1.34770 * 120.00190 * 299.99834 * 17 2 1 20 20 C 1.47586 * 134.49328 * 179.97438 * 19 17 2 21 21 C 1.53950 * 86.11354 * 155.35990 * 20 19 17 22 22 C 1.50706 * 113.73627 * 137.95493 * 21 20 19 23 23 H 1.07995 * 120.00167 * 1.64697 * 22 21 20 24 24 C 1.37879 * 119.99394 * 181.92396 * 22 21 20 25 25 N 1.31514 * 119.99350 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00608 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 89.99430 * 26 24 22 28 28 H 1.48494 * 109.47031 * 209.99977 * 26 24 22 29 29 H 1.48504 * 109.46680 * 329.99678 * 26 24 22 30 30 C 1.47813 * 134.45830 * 359.86765 * 19 17 2 31 31 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46644 * 299.99617 * 1 2 3 33 33 H 1.08998 * 109.46873 * 59.99611 * 1 2 3 34 34 H 1.09001 * 109.46549 * 184.99755 * 4 2 1 35 35 H 1.09001 * 109.46916 * 304.99782 * 4 2 1 36 36 H 1.08000 * 119.94388 * 0.02562 * 6 5 4 37 37 H 1.08004 * 120.05582 * 180.25525 * 7 6 5 38 38 H 1.07990 * 120.06061 * 180.02562 * 15 8 7 39 39 H 1.08006 * 119.94262 * 179.97438 * 16 15 8 40 40 H 1.09008 * 113.76654 * 41.06222 * 20 19 17 41 41 H 1.08991 * 113.77014 * 269.66271 * 20 19 17 42 42 H 1.09000 * 113.74485 * 269.15566 * 21 20 19 43 43 H 0.97005 * 119.99656 * 180.02562 * 25 24 22 44 44 H 1.09002 * 113.76703 * 90.37825 * 30 19 17 45 45 H 1.08998 * 113.83277 * 318.91803 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 6 0.4368 -0.2108 -3.1015 7 6 0.0646 0.5025 -4.2231 8 6 0.9095 1.4862 -4.7319 9 6 0.5169 2.2527 -5.9412 10 7 1.2242 3.2215 -6.5396 11 7 0.5365 3.6279 -7.5523 12 7 -0.5612 2.9576 -7.6081 13 1 -1.2543 3.0707 -8.2773 14 7 -0.5926 2.1096 -6.6382 15 6 2.1239 1.7486 -4.1018 16 6 2.4835 1.0337 -2.9772 17 6 2.0324 -0.7105 1.2303 18 8 2.7297 -1.6965 1.1190 19 7 1.7069 -0.2501 2.4545 20 6 2.0087 -0.6779 3.8343 21 6 1.7571 0.7879 4.2322 22 6 0.9629 0.9437 5.5034 23 1 0.6514 0.0697 6.0561 24 6 0.6292 2.2019 5.9579 25 7 -0.0643 2.3378 7.0670 26 14 1.1607 3.7134 4.9975 27 1 0.1120 4.0643 4.0064 28 1 1.3583 4.8498 5.9327 29 1 2.4347 3.4274 4.2899 30 6 0.9056 0.8873 2.9534 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 3.1263 -0.7993 -1.2057 35 1 1.6054 -1.7197 -1.2953 36 1 -0.2155 -0.9768 -2.7088 37 1 -0.8780 0.2952 -4.7078 38 1 2.7823 2.5104 -4.4919 39 1 3.4250 1.2359 -2.4880 40 1 3.0397 -1.0015 3.9784 41 1 1.2808 -1.3763 4.2470 42 1 2.6533 1.4081 4.2122 43 1 -0.2995 3.2231 7.3865 44 1 -0.1470 0.6493 3.1069 45 1 1.0571 1.8112 2.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589893847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:54 Heat of formation + Delta-G solvation = 137.414511 kcal Electronic energy + Delta-G solvation = -28089.426076 eV Core-core repulsion = 24110.765223 eV Total energy + Delta-G solvation = -3978.660853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.80579 -40.13324 -39.39755 -37.38199 -35.38637 -34.55558 -33.53151 -32.65220 -31.29027 -31.01678 -29.32932 -27.19810 -25.65407 -25.28418 -25.08811 -24.29357 -22.73918 -22.47805 -21.02748 -19.68570 -19.57157 -18.31998 -17.49436 -17.20907 -17.15570 -16.65428 -15.64775 -15.55058 -15.28762 -15.09419 -14.51163 -14.26740 -13.91777 -13.74604 -13.61234 -13.48824 -13.05261 -12.96566 -12.71933 -12.65277 -12.42690 -12.07802 -11.91983 -11.74287 -11.72476 -11.60485 -11.43812 -11.33330 -11.23974 -10.97424 -10.96331 -10.93858 -10.66635 -10.07547 -9.83715 -9.41465 -9.22376 -9.08780 -8.75385 -8.69570 -8.05476 -6.22800 -4.25642 0.38798 0.84131 1.13704 1.86949 2.02771 3.03338 3.17364 3.26626 3.28483 3.33737 3.38032 3.57436 3.84681 4.27934 4.49712 4.62592 4.72546 4.84351 4.91539 4.97396 5.01824 5.04775 5.09853 5.17194 5.28354 5.38481 5.56318 5.64818 5.69540 5.78748 5.79154 5.87124 5.95964 5.96354 6.06452 6.11634 6.12367 6.14992 6.16303 6.21958 6.30173 6.34623 6.42358 6.54510 6.63676 7.15958 7.52151 7.78191 8.26999 8.37696 8.60640 8.80642 9.37602 10.89286 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.002215 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.646470 B =12640.579752 C =13809.345739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.066 4.066 5 C -0.050 4.050 6 C -0.118 4.118 7 C -0.077 4.077 8 C -0.032 4.032 9 C 0.225 3.775 10 N -0.270 5.270 11 N -0.050 5.050 12 N -0.229 5.229 13 H 0.475 0.525 14 N -0.296 5.296 15 C -0.072 4.072 16 C -0.119 4.119 17 C 0.530 3.470 18 O -0.562 6.562 19 N -0.638 5.638 20 C 0.117 3.883 21 C -0.013 4.013 22 C -0.514 4.514 23 H 0.080 0.920 24 C 0.077 3.923 25 N -0.893 5.893 26 Si 0.872 3.128 27 H -0.273 1.273 28 H -0.286 1.286 29 H -0.262 1.262 30 C 0.087 3.913 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.266 0.734 44 H 0.087 0.913 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -0.191 -27.278 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 H 0.112 0.888 4 C -0.103 4.103 5 C -0.051 4.051 6 C -0.136 4.136 7 C -0.097 4.097 8 C -0.035 4.035 9 C -0.055 4.055 10 N -0.143 5.143 11 N -0.045 5.045 12 N -0.075 5.075 13 H 0.329 0.671 14 N -0.148 5.148 15 C -0.092 4.092 16 C -0.137 4.137 17 C 0.320 3.680 18 O -0.442 6.442 19 N -0.371 5.371 20 C -0.004 4.004 21 C -0.032 4.032 22 C -0.551 4.551 23 H 0.098 0.902 24 C -0.127 4.127 25 N -0.529 5.529 26 Si 0.698 3.302 27 H -0.199 1.199 28 H -0.212 1.212 29 H -0.187 1.187 30 C -0.035 4.035 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.331 -0.176 -27.876 27.908 hybrid contribution -0.516 0.798 -0.617 1.133 sum -1.847 0.623 -28.493 28.560 Atomic orbital electron populations 1.21898 0.92951 1.02674 1.03139 1.21165 0.97830 1.00767 0.92332 0.88761 1.20491 1.02497 0.98141 0.89183 1.20159 0.93868 0.95277 0.95789 1.21046 0.96557 1.00462 0.95502 1.21128 0.98918 0.93980 0.95661 1.17206 0.96640 0.97768 0.91893 1.23764 0.87973 0.95852 0.97863 1.76096 1.24009 1.11360 1.02798 1.78918 0.93804 1.16715 1.15103 1.47731 1.16757 1.21817 1.21168 0.67061 1.74932 1.23525 1.14920 1.01415 1.21153 0.94721 0.98684 0.94621 1.21062 1.00357 0.96042 0.96197 1.20185 0.80419 0.83882 0.83558 1.90643 1.40009 1.27151 1.86439 1.50387 1.50888 1.31134 1.04729 1.23263 1.00211 0.99422 0.77526 1.21073 0.96149 0.92472 0.93527 1.20832 1.33907 0.94395 1.06005 0.90237 1.25002 0.94230 0.98941 0.94515 1.69893 1.37940 1.23766 1.21331 0.86917 0.79982 0.82924 0.80328 1.19894 1.21184 1.18675 1.24037 0.97343 0.86976 0.95180 0.92179 0.91408 0.91413 0.89724 0.89954 0.85039 0.85059 0.84714 0.84993 0.91660 0.90157 0.91943 0.92369 0.89447 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.65 37.16 0.32 -1.43 16 2 C -0.10 -1.31 2.54 -91.77 -0.23 -1.54 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.07 -0.75 4.18 -27.88 -0.12 -0.86 16 5 C -0.05 -0.49 4.71 -104.56 -0.49 -0.99 16 6 C -0.12 -1.06 7.96 -39.63 -0.32 -1.37 16 7 C -0.08 -0.69 9.70 -39.26 -0.38 -1.07 16 8 C -0.03 -0.32 5.88 -104.89 -0.62 -0.93 16 9 C 0.23 2.34 7.94 -156.30 -1.24 1.10 16 10 N -0.27 -2.98 12.23 32.15 0.39 -2.58 16 11 N -0.05 -0.46 13.47 60.35 0.81 0.36 16 12 N -0.23 -1.45 7.90 60.35 0.48 -0.97 16 13 H 0.48 0.66 8.96 -340.36 -3.05 -2.39 16 14 N -0.30 -2.61 12.08 32.17 0.39 -2.22 16 15 C -0.07 -0.69 9.70 -39.26 -0.38 -1.07 16 16 C -0.12 -1.13 9.68 -39.63 -0.38 -1.51 16 17 C 0.53 9.24 7.38 -10.99 -0.08 9.16 16 18 O -0.56 -11.40 16.65 5.55 0.09 -11.31 16 19 N -0.64 -11.73 3.57 -178.21 -0.64 -12.36 16 20 C 0.12 2.28 8.39 -2.96 -0.02 2.25 16 21 C -0.01 -0.27 2.90 -90.84 -0.26 -0.53 16 22 C -0.51 -13.03 9.33 -34.44 -0.32 -13.36 16 23 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 24 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 25 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 26 Si 0.87 19.59 26.96 -169.99 -4.58 15.00 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.26 -5.63 6.29 56.52 0.36 -5.28 16 30 C 0.09 1.61 5.62 -2.83 -0.02 1.60 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.86 6.13 -51.93 -0.32 0.54 16 33 H 0.07 0.68 6.28 -51.93 -0.33 0.36 16 34 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.13 1.00 8.05 -52.49 -0.42 0.58 16 37 H 0.13 1.02 7.88 -52.48 -0.41 0.61 16 38 H 0.13 1.19 7.89 -52.49 -0.41 0.77 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 41 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 42 H 0.06 1.36 6.70 -51.93 -0.35 1.01 16 43 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.09 1.61 7.92 -51.93 -0.41 1.20 16 45 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 LS Contribution 378.07 15.07 5.70 5.70 Total: -1.00 -32.13 378.07 -9.89 -42.02 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.66 Total: -0.36 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -4.64 Total: -8.63 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 2.21 Total: -42.43 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.58 Total: 15.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.13 -9.89 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589893847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.437 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds