Wall clock time and date at job start Wed Apr 1 2020 00:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47115 * 2 1 4 4 C 1.53007 * 109.46904 * 240.00596 * 2 1 3 5 5 C 1.50697 * 109.47154 * 64.99984 * 4 2 1 6 6 C 1.38316 * 119.88028 * 269.72332 * 5 4 2 7 7 C 1.38031 * 120.11479 * 179.76787 * 6 5 4 8 8 C 1.39300 * 119.88374 * 0.52874 * 7 6 5 9 9 C 1.48460 * 120.11900 * 179.74745 * 8 7 6 10 10 N 1.34050 * 126.67403 * 180.02562 * 9 8 7 11 11 N 1.28984 * 107.26853 * 179.97438 * 10 9 8 12 12 N 1.28735 * 108.94437 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.34341 * 179.97438 * 12 11 10 14 14 N 1.28873 * 109.31402 * 359.74892 * 12 11 10 15 15 C 1.39304 * 119.76565 * 359.72526 * 8 7 6 16 16 C 1.38027 * 119.87889 * 359.97438 * 15 8 7 17 17 C 1.50694 * 109.47219 * 120.00455 * 2 1 3 18 18 O 1.21284 * 120.00100 * 120.00104 * 17 2 1 19 19 N 1.34770 * 120.00190 * 299.99834 * 17 2 1 20 20 C 1.47586 * 134.49328 * 179.97438 * 19 17 2 21 21 C 1.53950 * 86.11354 * 155.35990 * 20 19 17 22 22 C 1.50706 * 113.73627 * 137.95493 * 21 20 19 23 23 H 1.07995 * 120.00167 * 1.64697 * 22 21 20 24 24 C 1.37879 * 119.99394 * 181.92396 * 22 21 20 25 25 N 1.31514 * 119.99350 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 120.00608 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 89.99430 * 26 24 22 28 28 H 1.48494 * 109.47031 * 209.99977 * 26 24 22 29 29 H 1.48504 * 109.46680 * 329.99678 * 26 24 22 30 30 C 1.47813 * 134.45830 * 359.86765 * 19 17 2 31 31 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46644 * 299.99617 * 1 2 3 33 33 H 1.08998 * 109.46873 * 59.99611 * 1 2 3 34 34 H 1.09001 * 109.46549 * 184.99755 * 4 2 1 35 35 H 1.09001 * 109.46916 * 304.99782 * 4 2 1 36 36 H 1.08000 * 119.94388 * 0.02562 * 6 5 4 37 37 H 1.08004 * 120.05582 * 180.25525 * 7 6 5 38 38 H 1.07990 * 120.06061 * 180.02562 * 15 8 7 39 39 H 1.08006 * 119.94262 * 179.97438 * 16 15 8 40 40 H 1.09008 * 113.76654 * 41.06222 * 20 19 17 41 41 H 1.08991 * 113.77014 * 269.66271 * 20 19 17 42 42 H 1.09000 * 113.74485 * 269.15566 * 21 20 19 43 43 H 0.97005 * 119.99656 * 180.02562 * 25 24 22 44 44 H 1.09002 * 113.76703 * 90.37825 * 30 19 17 45 45 H 1.08998 * 113.83277 * 318.91803 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 6 0.4368 -0.2108 -3.1015 7 6 0.0646 0.5025 -4.2231 8 6 0.9095 1.4862 -4.7319 9 6 0.5169 2.2527 -5.9412 10 7 1.2242 3.2215 -6.5396 11 7 0.5365 3.6279 -7.5523 12 7 -0.5612 2.9576 -7.6081 13 1 -1.2543 3.0707 -8.2773 14 7 -0.5926 2.1096 -6.6382 15 6 2.1239 1.7486 -4.1018 16 6 2.4835 1.0337 -2.9772 17 6 2.0324 -0.7105 1.2303 18 8 2.7297 -1.6965 1.1190 19 7 1.7069 -0.2501 2.4545 20 6 2.0087 -0.6779 3.8343 21 6 1.7571 0.7879 4.2322 22 6 0.9629 0.9437 5.5034 23 1 0.6514 0.0697 6.0561 24 6 0.6292 2.2019 5.9579 25 7 -0.0643 2.3378 7.0670 26 14 1.1607 3.7134 4.9975 27 1 0.1120 4.0643 4.0064 28 1 1.3583 4.8498 5.9327 29 1 2.4347 3.4274 4.2899 30 6 0.9056 0.8873 2.9534 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 3.1263 -0.7993 -1.2057 35 1 1.6054 -1.7197 -1.2953 36 1 -0.2155 -0.9768 -2.7088 37 1 -0.8780 0.2952 -4.7078 38 1 2.7823 2.5104 -4.4919 39 1 3.4250 1.2359 -2.4880 40 1 3.0397 -1.0015 3.9784 41 1 1.2808 -1.3763 4.2470 42 1 2.6533 1.4081 4.2122 43 1 -0.2995 3.2231 7.3865 44 1 -0.1470 0.6493 3.1069 45 1 1.0571 1.8112 2.3953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589893847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:53 Heat of formation + Delta-G solvation = 117.466413 kcal Electronic energy + Delta-G solvation = -28090.291091 eV Core-core repulsion = 24110.765223 eV Total energy + Delta-G solvation = -3979.525867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.46702 -41.34888 -40.36650 -38.83480 -36.31386 -35.27672 -34.64375 -34.28207 -32.01041 -31.95215 -30.79745 -28.07421 -27.23849 -26.86071 -25.79712 -25.18738 -23.60219 -23.31136 -21.96199 -21.14153 -20.19682 -19.72823 -19.06439 -18.15563 -18.14366 -17.67034 -16.88986 -16.78111 -16.33415 -16.10618 -15.80026 -15.37631 -15.02920 -14.84438 -14.56025 -14.46003 -14.35118 -14.18508 -13.87705 -13.62163 -13.46942 -13.33605 -13.22867 -13.03727 -12.72551 -12.53581 -12.41605 -12.35449 -12.25603 -12.10885 -12.04928 -11.81141 -11.76611 -11.71002 -11.52400 -11.26807 -10.74360 -10.52929 -9.88503 -9.58488 -9.47581 -8.25076 -6.32643 -0.30367 0.16545 0.46209 1.29510 1.42103 1.42229 1.46348 1.54564 1.66413 2.00679 2.40208 2.67465 2.82092 3.06665 3.16676 3.40307 3.86351 3.92095 4.00352 4.07164 4.09550 4.12369 4.23871 4.32719 4.41173 4.41281 4.50163 4.51506 4.56209 4.59641 4.75444 4.79381 4.81872 4.87220 4.88147 4.94667 5.05398 5.14545 5.24159 5.29669 5.40480 5.43148 5.46472 5.60497 5.63569 5.68723 5.94706 6.30145 6.72560 6.90221 7.10656 7.18771 7.34494 8.90504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.002215 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.646470 B =12640.579752 C =13809.345739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.107 0.893 4 C -0.057 4.057 5 C -0.055 4.055 6 C -0.115 4.115 7 C -0.076 4.076 8 C -0.040 4.040 9 C 0.212 3.788 10 N -0.296 5.296 11 N -0.058 5.058 12 N -0.201 5.201 13 H 0.494 0.506 14 N -0.297 5.297 15 C -0.077 4.077 16 C -0.120 4.120 17 C 0.528 3.472 18 O -0.593 6.593 19 N -0.639 5.639 20 C 0.116 3.884 21 C -0.020 4.020 22 C -0.513 4.513 23 H 0.039 0.961 24 C 0.020 3.980 25 N -0.945 5.945 26 Si 0.934 3.066 27 H -0.254 1.254 28 H -0.293 1.293 29 H -0.242 1.242 30 C 0.102 3.898 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.267 0.733 44 H 0.088 0.912 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 0.821 -30.267 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.125 0.875 4 C -0.094 4.094 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.096 4.096 8 C -0.043 4.043 9 C -0.068 4.068 10 N -0.169 5.169 11 N -0.053 5.053 12 N -0.052 5.052 13 H 0.353 0.647 14 N -0.149 5.149 15 C -0.097 4.097 16 C -0.138 4.138 17 C 0.319 3.681 18 O -0.475 6.475 19 N -0.372 5.372 20 C -0.006 4.006 21 C -0.039 4.039 22 C -0.551 4.551 23 H 0.058 0.942 24 C -0.179 4.179 25 N -0.584 5.584 26 Si 0.758 3.242 27 H -0.178 1.178 28 H -0.220 1.220 29 H -0.166 1.166 30 C -0.020 4.020 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.680 0.830 -30.912 30.969 hybrid contribution -0.442 0.372 0.291 0.646 sum -2.122 1.202 -30.621 30.718 Atomic orbital electron populations 1.21894 0.91629 1.03017 1.03734 1.21202 0.98758 1.00831 0.90534 0.87533 1.20364 1.01875 0.98082 0.89122 1.20027 0.94513 0.95569 0.95531 1.21203 0.96341 1.00488 0.95246 1.21258 0.99234 0.93539 0.95582 1.17385 0.96972 0.98029 0.91948 1.23899 0.88385 0.96128 0.98343 1.76074 1.24998 1.12184 1.03609 1.78858 0.94468 1.17097 1.14904 1.47797 1.16460 1.20287 1.20662 0.64690 1.74894 1.23066 1.15237 1.01698 1.21223 0.94854 0.98922 0.94730 1.21181 1.00694 0.95781 0.96125 1.20989 0.79453 0.83550 0.84104 1.90631 1.41317 1.28697 1.86831 1.50357 1.51020 1.31133 1.04700 1.23140 1.00377 0.98352 0.78757 1.21015 0.96202 0.93867 0.92857 1.20999 1.33700 0.93107 1.07297 0.94236 1.25858 0.94263 1.02360 0.95405 1.70049 1.40192 1.24529 1.23655 0.85907 0.80856 0.78293 0.79170 1.17820 1.21987 1.16566 1.23805 0.96768 0.88046 0.93424 0.92054 0.92227 0.89328 0.90593 0.90222 0.83543 0.83850 0.84444 0.84068 0.91299 0.90651 0.91705 0.92415 0.89421 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.65 71.98 0.62 -2.34 16 2 C -0.09 -2.17 2.54 -11.54 -0.03 -2.20 16 3 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.06 -1.17 4.18 29.85 0.12 -1.05 16 5 C -0.06 -0.96 4.71 -19.83 -0.09 -1.05 16 6 C -0.11 -1.74 7.96 22.24 0.18 -1.57 16 7 C -0.08 -1.18 9.70 22.48 0.22 -0.96 16 8 C -0.04 -0.73 5.88 -20.04 -0.12 -0.84 16 9 C 0.21 4.06 7.94 137.38 1.09 5.15 16 10 N -0.30 -6.18 12.23 -52.18 -0.64 -6.82 16 11 N -0.06 -0.97 13.47 37.02 0.50 -0.47 16 12 N -0.20 -2.13 7.90 37.02 0.29 -1.84 16 13 H 0.49 0.19 8.96 -347.53 -3.12 -2.92 16 14 N -0.30 -4.59 12.08 -52.13 -0.63 -5.22 16 15 C -0.08 -1.35 9.70 22.48 0.22 -1.13 16 16 C -0.12 -2.02 9.68 22.24 0.22 -1.80 16 17 C 0.53 17.44 7.38 87.66 0.65 18.09 16 18 O -0.59 -23.42 16.65 -3.04 -0.05 -23.47 16 19 N -0.64 -22.42 3.57 -836.11 -2.99 -25.40 16 20 C 0.12 4.47 8.39 86.49 0.73 5.19 16 21 C -0.02 -0.83 2.90 -10.87 -0.03 -0.86 16 22 C -0.51 -26.47 9.33 25.60 0.24 -26.23 16 23 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 24 C 0.02 1.04 5.47 84.66 0.46 1.50 16 25 N -0.95 -55.20 13.96 21.45 0.30 -54.90 16 26 Si 0.93 39.34 26.96 68.60 1.85 41.19 16 27 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 28 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.24 -9.34 6.29 99.48 0.63 -8.72 16 30 C 0.10 3.54 5.62 86.44 0.49 4.02 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.33 6.13 -2.39 -0.01 1.31 16 33 H 0.09 1.46 6.28 -2.39 -0.01 1.44 16 34 H 0.08 1.71 7.90 -2.39 -0.02 1.69 16 35 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16 36 H 0.15 1.75 8.05 -2.91 -0.02 1.73 16 37 H 0.14 1.83 7.88 -2.91 -0.02 1.81 16 38 H 0.14 2.26 7.89 -2.92 -0.02 2.24 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.07 2.57 8.14 -2.38 -0.02 2.56 16 41 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 42 H 0.06 2.68 6.70 -2.39 -0.02 2.67 16 43 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 44 H 0.09 3.06 7.92 -2.39 -0.02 3.05 16 45 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 Total: -1.00 -69.99 378.07 1.43 -68.56 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -2.16 Total: 14.44 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.95 Total: -6.07 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.16 Total: -94.65 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.85 Total: 41.19 kcal Total: -69.99 1.43 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589893847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.031 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds